Biology:Ferroplasma

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Short description: Genus of archaea

Ferroplasma
Hallan-en-un-microorganismo-primitivo-una-proteina-capaz-de-reparar-ADN.jpg
Ferroplasma acidiphilum
Scientific classification
Domain:
Archaea
Kingdom:
Euryarchaeota
Phylum:
Euryarchaeota
Class:
Thermoplasmata
Order:
Thermoplasmatales
Family:
Ferroplasmaceae
Genus:
Ferroplasma

Golyshina et al. 2000
Type species
Ferroplasma acidiphilum
Golyshina et al. 2000
Species

Ferroplasma is a genus of Archaea that belong to the family Ferroplasmaceae. Members of the Ferroplasma are typically acidophillic, pleomorphic, irregularly shaped cocci.[1][2]

The archaean family Ferroplasmaceae was first described in the early 2000s.[3] To date very few species of Ferroplasma have been isolated and characterized. Isolated species include Ferroplasma acidiphilum, Ferroplasma acidarmanus, and Ferroplasma thermophilum.[1][4] A fourth isolate Ferroplasma cupricumulans was later determined to belong to a separate genus.[5][6] All known Ferroplasma sp. are iron-oxidizers.

Cell characteristics and Physiology

Genome map of Ferroplasma acidiphilum YT (aka DSM:12658)
CRISPR locus in F. acidiphilum YT with one operon encoding the CRISPR-associated (Cas) proteins (red arrows).

Ferroplasma cells are pleomorphic and lack a cell-wall.[2] All known members of the genera are acidophiles that thrive in environments where pH ranges from 0.0 to 2.0.[1][2] They are also mesophilic to moderately thermophilic with optimal temperatures ranging from 35-55 °C.[3]

Tetraether-based lipids are an important part of the Ferroplasma cellular membrane and allow cells to maintain a pH gradient. A study of F. acidarmanus found that cytoplasmic pH was maintained ~5.6 while the environmental pH ranged from ~0-1.2.[7] Variations in the tetraether lipids of the family Ferroplasmaceae are used for chemotaxonomic identification at the genus and species level because many members possess identical 16S rRNA sequences.[3]

Members of the genus Ferroplasma are chemomixotrophs that can oxidize ferrous iron to acquire energy, but despite evidence of carbon fixation, lab cultures often require an organic carbon source such as yeast extract for growth.[1][3] In the absence of iron, some lab-grown strains have been capable of chemoorganotrophic growth.[1]

Ecological Importance

Iron is the fourth most abundant mineral in Earth's crust. As iron-oxidizers Ferroplasma sp. participate in the biogeochemical of iron. Ferroplasma sp. are often identified at acid mine drainage (AMD) sites.[3] When ferrous iron (Fe2+) is oxidized to ferric iron (Fe3+) at mine sites, Fe3+ spontaneously reacts with water and iron-sulfur compounds like pyrite to produce sulfate and hydrogen ions.[8] During this reaction ferrous iron, which can be utilized by Ferroplasma, is also regenerated leading to a "propagation cycle" where pH is lowered. The reaction can be described by the following equation:

[math]\ce{ FeS2 + 14Fe^3+ + 8H2O-> 15Fe^2+ + 2SO4^2- + 16H+ }[/math]

Ferroplasma species are often present at AMD sites where they participate in this cycle through the biotic oxidation of ferrous iron.[8]

Ferroplasma sp. may have important applications for bioleaching metals. Microbial bioleaching occurs naturally in the highly acidic environments that are home to Ferroplasma sp. Harnessing the power of bioleaching to recover metal from low quality ores and waste material is energetically advantageous compared to smelting and purifying.[9][10] It also produces fewer toxic byproducts. Studies have shown that the inclusion of Ferroplasma thermophilum along with the bacteria Acidithiobacillus caldus and Leptospirillum ferriphilum can bioaugment the leaching process of chalcopyrite and increase the rate at which copper is recovered.[11]

Isolated Species

Ferroplasma acidiphilum

Ferroplasma acidiphilum has been shown to grow as a chemomixotroph and to grow synergistically with the acidophilic bacteria Leptospirillum ferriphilum.[12] The strain Ferroplasma acidiphilum YT is a facultative anaerobe with all the required genes for arginine fermentation.[13] Although it is unclear whether Ferroplasma acidiphilum YT uses its arginine fermentation pathway, the pathway itself is an ancient metabolism that traces back to the last universal common ancestor (LUCA) of the three domains of life.[13][14]

Ferroplasma acidarmanus

Ferroplasma acidarmanus Fer1 was isolated from mine samples collected at Iron Mountain, California.[15] Iron Mountain (CA) is a former mine that is known for its acid mine drainage (AMD) and heavy metal contamination. In addition to being acidophilic, F. acidarmanus Fer1 is highly resistant to both copper and arsenic.[15][16]

Ferroplasma cupricumulans (formerly Ferroplasma cyprexacervatum)

In 2006 Ferroplasma cupricumulans was isolated from leachate solution collected from the Myanmar Ivanhoe Copper company (MICCL) mining site in Myanmar.[5] It was noted to be the first slightly thermophilic member of the genus Ferroplasma. However, in 2009 a new genus of acidophilic, thermophilic archaea, Acidiplasma, was identified. It was proposed that, based on 16S rRNA similarity and DNA-DNA hybridization, be transferred to the genus Acidiplasma and renamed Acidiplasma cupricumulans.[6]

Ferroplasma thermophilum

In 2008, Zhou, et al. described the isolation of the organism Ferroplasma thermophilum L1T from a chalcopyrite column reactor that was inoculated with acid mine drainage (AMD) from the Daye copper mine in China’s Hubei province.[4] In aerobic conditions with low concentrations of yeast extract F. thermophilum grows by oxidizing ferrous iron.[4] However, in anaerobic conditions F. thermophilum reduces ferric iron and sulfate.[4] This makes F. thermophilum ecologically important for iron and sulfur cycling at pyrite-rich mine sites.

See also

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 "Characterization of Ferroplasma isolates and Ferroplasma acidarmanus sp. nov., extreme acidophiles from acid mine drainage and industrial bioleaching environments". Applied and Environmental Microbiology 70 (4): 2079–88. April 2004. doi:10.1128/AEM.70.4.2079-2088.2004. PMID 15066799. Bibcode: 2004ApEnM..70.2079D. 
  2. ↑ 2.0 2.1 2.2 "Ferroplasma and relatives, recently discovered cell wall-lacking archaea making a living in extremely acid, heavy metal-rich environments". Environmental Microbiology 7 (9): 1277–88. September 2005. doi:10.1111/j.1462-2920.2005.00861.x. PMID 16104851. 
  3. ↑ 3.0 3.1 3.2 3.3 3.4 "Environmental, biogeographic, and biochemical patterns of archaea of the family Ferroplasmaceae". Applied and Environmental Microbiology 77 (15): 5071–8. August 2011. doi:10.1128/AEM.00726-11. PMID 21685165. Bibcode: 2011ApEnM..77.5071G. 
  4. ↑ 4.0 4.1 4.2 4.3 "Isolation and characterization of Ferroplasma thermophilum sp. nov., a novel extremely acidophilic, moderately thermophilic archaeon and its role in bioleaching of chalcopyrite". Journal of Applied Microbiology 105 (2): 591–601. August 2008. doi:10.1111/j.1365-2672.2008.03807.x. PMID 18422958. 
  5. ↑ 5.0 5.1 "Moderate thermophiles including "Ferroplasma cupricumulans" sp. nov. dominate an industrial-scale chalcocite heap bioleaching operation". Hydrometallurgy. 16th International Biohydrometallurgy Symposium 83 (1): 229–236. 2006-09-01. doi:10.1016/j.hydromet.2006.03.027. 
  6. ↑ 6.0 6.1 "Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov". International Journal of Systematic and Evolutionary Microbiology 59 (Pt 11): 2815–23. November 2009. doi:10.1099/ijs.0.009639-0. PMID 19628615. 
  7. ↑ "Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid". Extremophiles 8 (5): 411–9. October 2004. doi:10.1007/s00792-004-0404-5. PMID 15258835. 
  8. ↑ 8.0 8.1 Madigan, Michael T.; Martinko, John M.; Bender, Kelly S.; Buckley, Daniel H.; Stahl, David A. (2015). Brock Biology of Microorganisms. United States of America: Pearson. pp. 652–653. ISBN 978-0-321-89739-8. 
  9. ↑ "Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation". Applied Microbiology and Biotechnology 63 (3): 239–48. December 2003. doi:10.1007/s00253-003-1448-7. PMID 14566432. 
  10. ↑ "Bioleaching review part B: progress in bioleaching: applications of microbial processes by the minerals industries". Applied Microbiology and Biotechnology 63 (3): 249–57. December 2003. doi:10.1007/s00253-003-1404-6. PMID 14566430. 
  11. ↑ "Influence of bioaugmentation with Ferroplasma thermophilum on chalcopyrite bioleaching and microbial community structure" (in en). Hydrometallurgy 146: 15–23. May 2014. doi:10.1016/j.hydromet.2014.02.013. 
  12. ↑ "Characterization of Ferroplasma acidiphilum growing in pure and mixed culture with Leptospirillum ferriphilum". Biotechnology Progress 32 (6): 1390–1396. November 2016. doi:10.1002/btpr.2340. PMID 27535541. 
  13. ↑ 13.0 13.1 "T". Scientific Reports 7 (1): 3682. June 2017. doi:10.1038/s41598-017-03904-5. PMID 28623373. 
  14. ↑ "Evolution of arginine deiminase (ADI) pathway genes". Molecular Phylogenetics and Evolution 25 (3): 429–44. December 2002. doi:10.1016/S1055-7903(02)00277-4. PMID 12450748. 
  15. ↑ 15.0 15.1 "Molecular insight into extreme copper resistance in the extremophilic archaeon 'Ferroplasma acidarmanus' Fer1". Microbiology 151 (Pt 8): 2637–2646. August 2005. doi:10.1099/mic.0.28076-0. PMID 16079342. 
  16. ↑ "Extreme arsenic resistance by the acidophilic archaeon 'Ferroplasma acidarmanus' Fer1". Extremophiles 11 (3): 425–34. May 2007. doi:10.1007/s00792-006-0052-z. PMID 17268768. 

Further reading

External links

Wikidata ☰ Q2666248 entry



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