Biology:Pseudomonadales-1 RNA motif
From HandWiki
| Pseudomonadales-1 | |
|---|---|
 Consensus secondary structure and sequence conservation of Pseudomonadales-1 RNA | |
| Identifiers | |
| Symbol | Pseudomonadales-1 |
| Rfam | RF03046 |
| Other data | |
| RNA type | Gene; sRNA |
| SO | 0001263 |
| PDB structures | PDBe |
The Pseudomonadales-1 RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] The Pseudomonadales-1 motif often exhibits an apparent sarcin-ricin loop, a type internal loop common in RNA. Pseudomonadales-1 motif RNAs are found in relatively closely related species of Pseudomonadales. Despite this narrow distribution, the Pseudomonadales-1 RNA motif does not exhibit many invariant nucleotide positions, suggesting that it does not need to be highly conserved at the primary sequence level.
Pseudomonadales-1 RNAs likely function in trans as small RNAs, as no consistent pattern of associated protein-coding genes is observed.
References
- ↑ "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. October 2017. doi:10.1093/nar/gkx699. PMID 28977401.
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