Biology:Gene Expression Omnibus
From HandWiki
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| Content | |
| Description | Gene expression profiling and RNA methylation database |
| Contact | |
| Research centre | National Center for Biotechnology Information |
| Primary citation | Edgar R & al. (2002)[1] |
| Access | |
| Website | https://www.ncbi.nlm.nih.gov/gds/?term= |
Gene Expression Omnibus (GEO) is a database for gene expression profiling and RNA methylation profiling managed by the National Center for Biotechnology Information (NCBI).[1] These high-throughput screening genomics data are derived from microarray or RNA-Seq experimental data.[2] These data need to conform to the minimum information about a microarray experiment (MIAME) format.[3]
Glossary
| Abbreviation | Description |
|---|---|
| GDS | DataSet accession |
| GPL | Platform accession |
| GSE | Series accession |
| GSM | Sample accession |
References
- ↑ 1.0 1.1 Edgar, R; Domrachev, M; Lash, AE (1 January 2002). "Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.". Nucleic Acids Research 30 (1): 207–10. doi:10.1093/nar/30.1.207. PMID 11752295.
- ↑ Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH et al. (January 2013). "NCBI GEO: archive for functional genomics data sets--update.". Nucleic Acids Research 41 (Database issue): D991-5. doi:10.1093/nar/gks1193. PMID 23193258.
- ↑ Brazma, A; Hingamp, P; Quackenbush, J; Sherlock, G; Spellman, P; Stoeckert, C; Aach, J; Ansorge, W et al. (December 2001). "Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.". Nature Genetics 29 (4): 365–71. doi:10.1038/ng1201-365. PMID 11726920.
"Gene Expression Omnibus". National Center for Biotechnology Information (NCBI). https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id={{{1}}}.
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