Software:EggNOG (database)
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| Description | Database of orthologous proteins and functional annotations at multiple taxonomical levels. |
| Contact | |
| Research centre | European Molecular Biology Laboratory |
| Author(s) | Huerta-Cepas et al. |
| Primary citation | Huerta-Cepas et al. (2015)[1] |
| Release date | 2015 |
| Access | |
| Website | http://eggnogdb.embl.de |
The eggNOG database is a database of biological information hosted by the EMBL. It is based on the original idea of COGs (clusters of orthologous groups)[2][3] and expands that idea to non-supervised orthologous groups constructed from numerous organisms.[4] The database was created in 2007[5] and updated to version 4.5 in 2015.[1] eggNOG stands for evolutionary genealogy of genes: Non-supervised Orthologous Groups.
References
- ↑ 1.0 1.1 "eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences". Nucleic Acids Res. 44 (D1): D286–93. 2016. doi:10.1093/nar/gkv1248. PMID 26582926.
- ↑ "A genomic perspective on protein families". Science 278 (5338): 631–7. 1997. doi:10.1126/science.278.5338.631. PMID 9381173. Bibcode: 1997Sci...278..631T. https://zenodo.org/record/1231126.
- ↑ "The COG database: a tool for genome-scale analysis of protein functions and evolution". Nucleic Acids Res. 28 (1): 33–6. 2000. doi:10.1093/nar/28.1.33. PMID 10592175.
- ↑ Powell, Sean; Szklarczyk, Damian; Trachana, Kalliopi; Roth, Alexander; Kuhn, Michael; Muller, Jean; Arnold, Roland; Rattei, Thomas et al. (January 2012). "eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges". Nucleic Acids Research 40 (D1): D284–D289. doi:10.1093/nar/gkr1060. PMID 22096231.
- ↑ "eggNOG: automated construction and annotation of orthologous groups of genes". Nucleic Acids Res. 36 (Database issue): D250–4. 2008. doi:10.1093/nar/gkm796. PMID 17942413.
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