DOT (graph description language)
Filename extensions | .gv |
---|---|
Type of format | Graph description language |
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv
or .dot
filename extension — .gv
is preferred, to avoid confusion with the .dot
extension used by versions of Microsoft Word before 2007.[1] dot
is also the name of the main program to process DOT files in the Graphviz package.
Various programs can process DOT files. Some, such as dot, neato, twopi, circo, fdp, and sfdp, can read a DOT file and render it in graphical form. Others, such as gvpr, gc, acyclic, ccomps, sccmap, and tred, read DOT files and perform calculations on the represented graph. Finally, others, such as lefty, dotty, and grappa, provide an interactive interface. The GVedit tool combines a text editor and a non-interactive viewer. Most programs are part of the Graphviz package or use it internally.
DOT is historically an acronym for "DAG of tomorrow", as the successor to a DAG format and a dag program which handled only directed acyclic graphs.[2]
Syntax
Graph types
Undirected graphs
At its simplest, DOT can be used to describe an undirected graph. An undirected graph shows simple relations between objects, such as reciprocal friendship between people. The graph
keyword is used to begin a new graph, and nodes are described within curly braces. A double-hyphen (--
) is used to show relations between the nodes.
// The graph name and the semicolons are optional graph graphname { a -- b -- c; b -- d; }
Directed graphs
Similar to undirected graphs, DOT can describe directed graphs, such as flowcharts and dependency trees. The syntax is the same as for undirected graphs, except the digraph
keyword is used to begin the graph, and an arrow (->) is used to show relationships between nodes.
digraph graphname { a -> b -> c; b -> d; }
Attributes
Various attributes can be applied to graphs, nodes and edges in DOT files.[3] These attributes can control aspects such as color, shape, and line styles. For nodes and edges, one or more attribute–value pairs are placed in square brackets []
after a statement and before the semicolon (which is optional). Graph attributes are specified as direct attribute–value pairs under the graph element, where multiple attributes are separated by a comma or using multiple sets of square brackets, while node attributes are placed after a statement containing only the name of the node, but not the relations between the dots.
graph graphname { // This attribute applies to the graph itself size="1,1"; // The label attribute can be used to change the label of a node a [label="Foo"]; // Here, the node shape is changed. b [shape=box]; // These edges both have different line properties a -- b -- c [color=blue]; b -- d [style=dotted]; // [style=invis] hides a node. }
HTML-like labels are supported, although initially Graphviz did not handle them.[4]
Comments
DOT supports C and C++ style single line and multiple line comments. In addition, it ignores lines with a number sign symbol #
as their first character, like many interpreted languages.
// This is a single line comment. /* This is a multiple line comment. */ # Lines like this are also ignored.
A simple example
Following is an example script that describes the bonding structure of an ethane molecule. This is an undirected graph and contains node attributes as explained above.
graph ethane { C_0 -- H_0 [type=s]; C_0 -- H_1 [type=s]; C_0 -- H_2 [type=s]; C_0 -- C_1 [type=s]; C_1 -- H_3 [type=s]; C_1 -- H_4 [type=s]; C_1 -- H_5 [type=s]; }
Layout programs
The DOT language defines a graph, but does not provide facilities for rendering the graph. There are several programs that can be used to render, view, and manipulate graphs in the DOT language:
General
- Graphviz – a collection of CLI utilities and libraries to manipulate and render graphs into different formats like SVG, PDF, PNG etc.
dot
– CLI tool for conversion between.dot
and other formats
JavaScript
- Canviz – a JavaScript library for rendering DOT files[5]
- d3-graphviz – a JavaScript library based on Viz.js and D3.js that renders DOT graphs and supports animated transitions between graphs and interactive graph manipulation[6]
- Vis.js – a JavaScript library that accept DOT as input for network graphs.[7]
- Viz.js – a JavaScript port of Graphviz that provides a simple wrapper for using it in the browser.
- hpcc-js/wasm Graphviz – a fast WASM library for Graphviz similar to Viz.js[8]
Java
- Gephi – an interactive visualization and exploration platform for all kinds of networks and complex systems, dynamic and hierarchical graphs
- Grappa – a partial port of Graphviz to Java
- graphviz-java – an open source partial port of Graphviz to Java available from github.com
- ZGRViewer – a DOT viewer[9]
Other
- Beluging – a Python- & Google Cloud Platform-based viewer of DOT and Beluga extensions
- dot2tex – a program to convert files from DOT to PGF/TikZ or PSTricks, both of which are rendered in LaTeX[10]
- OmniGraffle – a digital illustration application for macOS that can import a subset of DOT, producing an editable document (but the result cannot be exported back to DOT)
- Tulip – a software framework in C++ that can import DOT files for analysis[11]
- VizierFX – an Apache Flex graph rendering library in ActionScript[12]
Limitations
While the DOT format allows the user to specify layout details via positional attributes, most tools rely on automated layout algorithms. These algorithms are best efforts and sometimes produce undesirable results.
For example:
Code | |
---|---|
digraph g { node [shape=plaintext]; A1 -> B1; A2 -> B2; A3 -> B3; A1 -> A2 [label=f]; A2 -> A3 [label=g]; B2 -> B3 [label="g'"]; B1 -> B3 [label="(g o f)'" tailport=s headport=s]; { rank=same; A1 A2 A3 } { rank=same; B1 B2 B3 } } | |
Natural output | Edited output |
There are presentation problems in the image titled "An image that seems improperly rendered". The square on the right is not a perfect square, and some labels are misaligned with their arrows (such as (g o f)').
This can be fixed with a vector graphics editor. In some cases, this can also be fixed by using the pos
attribute to specify a position, and the weight
attribute to square the graph.
Notes
- ↑ "File extension .dot or .gv?". http://marc.info/?l=graphviz-devel&m=129418103126092.
- ↑ "'dot' name (etymology)" (in en). 2022-11-14. https://forum.graphviz.org/t/dot-name-etymology/1367.
- ↑ "Node, Edge and Graph Attributes". http://www.graphviz.org/doc/info/attrs.html.
- ↑ "Node Shapes: HTML-Like Labels". http://www.graphviz.org/doc/info/shapes.html#html.
- ↑ "canviz: graphviz on a canvas". http://www.ryandesign.com/canviz/.
- ↑ "GitHub - magjac/d3-graphviz: Graphviz DOT rendering and animated transitions using D3". https://github.com/magjac/d3-graphviz.
- ↑ "Import data in DOT language". http://visjs.org/docs/network/#importDot.
- ↑ "hpcc-js/wasm". https://github.com/hpcc-systems/hpcc-js-wasm#graphviz-graphvizlibwasm.
- ↑ "ZGRViewer". http://zvtm.sourceforge.net/zgrviewer.html.
- ↑ "dot2tex – A Graphviz to LaTeX converter". 2019-11-01. https://dot2tex.readthedocs.io/.
- ↑ "Data Visualization Software – Tulip". http://tulip.labri.fr/.
- ↑ "GitHub - gvhung/vizierfx: Automatically exported from code.google.com/p/vizierfx". https://github.com/gvhung/vizierfx.
See also
External links
- DOT tutorial and specification
- Graphviz Online: instant conversion and visualization of DOT descriptions
- Boost Graph Library
- lisp2dot or tree2dot: convert Lisp programming language-like program trees to DOT language (designed for use with genetic programming)
Original source: https://en.wikipedia.org/wiki/DOT (graph description language).
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