Biography:Gary Bryce Fogel

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Gary B. Fogel (born 1968) is an American biologist and computer scientist. He is the Chief Executive Officer of Natural Selection, Inc.[1] He is most known for his applications of computational intelligence and machine learning to bioinformatics, computational biology, and industrial optimization.

Early life and education

Fogel was born and raised in La Jolla, California, graduating from La Jolla High School. He received a B.A. in biology with a minor in geology from the University of California, Santa Cruz in 1991. He earned a Ph.D. in biology from the University of California, Los Angeles in 1998.

Research

Fogel has published over 140 peer-reviewed publications in conferences and journals and 3 edited books. He currently is editor-in-chief of the Elsevier journal BioSystems,[2] and is an associate editor of IEEE Transactions on Emerging Topics in Computational Intelligence.[3] He previously served as a founding associate editor for IEEE/ACM Transactions on Computational Biology and Bioinformatics, and as an associate editor for IEEE Transactions on Evolutionary Computation. Within the IEEE Computational Intelligence Society, Fogel founded the Bioinformatics and Bioengineering Technical Committee and has served as Vice President, Conferences. He established the IEEE Computational Intelligence in Bioinformatics and Computational Biology conference series, chairing the first two meetings in 2004 and 2005 in San Diego.[4] He was named Fellow of the Institute of Electrical and Electronics Engineers (IEEE) in 2012[5] for contributions to computational intelligence and its application to biology, chemistry, and medicine. He received the IEEE Computational Intelligence Meritorious Service Award in 2016.[6] He is also a member of Sigma Xi and was awarded the Sigma Xi San Diego Chapter Award for Distinguished Science. Gary Fogel’s research focuses on the application of computational intelligence, machine learning, and predictive analytics in areas not limited to:

Viral evolution[7][8][9]

Cellular differentiation[10][11]

Drug discovery[12][13]

RNA structure[14][15]

Evolutionary game theory [16][17][18]

References

  1. ↑ http://www.natural-selection.com/management
  2. ↑ http://www.journals.elsevier.com/biosystems/
  3. ↑ http://cis.ieee.org/ieee-transactions-on-emerging-topics-in-computational-intelligence/675--ieee-transactions-on-emerging-topics-in-computational-intelligence-editor-and-associate-editors.html
  4. ↑ http://www.prnewswire.com/news-releases/dr-gary-fogel-chairs-the-inaugural-2004-ieee-symposium-on-computational-intelligence-in-bioinformatics-and-computational-biology-74341687.html
  5. ↑ "2012 elevated fellow". https://www.ieee.org/documents/fellows_class_2012.pdf. 
  6. ↑ http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=7379031
  7. ↑ Lamers, Susanna L., Marco Salemi, Michael S. McGrath, and Gary B. Fogel. "Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks." IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 5, no. 2 (2008): 291-300.
  8. ↑ Lamers, Susanna L., Gary B. Fogel, Elyse J. Singer, Marco Salemi, David J. Nolan, Leanne C. Huysentruyt, and Michael S. McGrath. "HIV-1 Nef in macrophage-mediated disease pathogenesis." International reviews of immunology 31, no. 6 (2012): 432-450.
  9. ↑ Lamers, Susanna L., Rebecca Rose, Ekaterina Maidji, Melissa Agsalda-Garcia, David J. Nolan, Gary B. Fogel, Marco Salemi et al. "HIV DNA is frequently present within pathologic tissues evaluated at autopsy from cART-treated patients with undetectable viral load." Journal of Virology (2016): JVI-00674.
  10. ↑ Hinton, Andrew, Shaun E. Hunter, Ivka Afrikanova, G. Adam Jones, Ana D. Lopez, Gary B. Fogel, Alberto Hayek, and Charles C. King. "sRNA‐seq Analysis of Human Embryonic Stem Cells and Definitive Endoderm Reveals Differentially Expressed MicroRNAs and Novel IsomiRs with Distinct Targets." Stem Cells 32, no. 9 (2014): 2360-2372.
  11. ↑ Fogel, Gary B., Zoya S. Kai, Sahar Zargar, Andrew Hinton, G. Adam Jones, Augusta S. Wong, Sevan G. Ficici, Ana D. Lopez, and Charles C. King. "MicroRNA dynamics during human embryonic stem cell differentiation to pancreatic endoderm." Gene 574, no. 2 (2015): 359-370.
  12. ↑ Hecht, David, and Gary B. Fogel. "A novel in silico approach to drug discovery via computational intelligence." Journal of Chemical Information and Modeling 49, no. 4 (2009): 1105-1121.
  13. ↑ Hecht, David, and Gary B. Fogel. "Modeling the evolution of drug resistance in malaria." Journal of computer-aided molecular design 26, no. 12 (2012): 1343-1353.
  14. ↑ Fogel, Gary B., et al. "Discovery of RNA structural elements using evolutionary computation." Nucleic Acids Research 30.23 (2002): 5310-5317.
  15. ↑ Lamers, Susanna L., Gary B. Fogel, and Michael S. McGrath. "HIV-miR-H1 evolvability during HIV pathogenesis." Biosystems 101, no. 2 (2010): 88-96.
  16. ↑ Fogel, David B., Gary B. Fogel, and Peter C. Andrews. "On the instability of evolutionary stable strategies." Biosystems 44, no. 2 (1997): 135-152.
  17. ↑ Fogel, Gary B., Peter C. Andrews, and David B. Fogel. "On the instability of evolutionary stable strategies in small populations." Ecological Modelling 109, no. 3 (1998): 283-294.
  18. ↑ Fogel, Gary B., and David B. Fogel. "Simulating natural selection as a culling mechanism on finite populations with the hawk–dove game." Biosystems 104, no. 1 (2011): 57-62.




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