Biology:Haplogroup NO1

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Haplogroup NO1
Haplogroup NO.png
Possible time of originFormed circa 45,400–45,840 years BP
(NO/NO1, based on YFull 2017,[1] and previous estimates of: 41,500 [95% CI 37,400 <-> 45,600] years BP,[2] 48,871 [95% CI 37,095 <-> 58,831] years BP,[3] and 50,800 or 43,500 years BP[4])
Coalescence ageCirca 41,500 – 40,067 years BP (NO/NO1, based on YFull 2017,[1] and previous estimates of: 36,800 [95% CI 34,300 <-> 39,300] years BP,[2] 41,900 [31,294 <-> 51,202] years BP,[3] and 44,700 or 38,300 years BP depending on mutation rate[4])
Possible place of originSoutheast Asia or East Asia (Northern China)[5][6][7]
AncestorK-M2313 (M2313/Z4858)
DescendantsN (M231) and O (M175).[8]
Defining mutationsM214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572[1][6]

Haplogroup NO1 (M214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572),[8] also known as NO-M214,[8] is a human Y-chromosome DNA haplogroup. NO1 is the sole confirmed subclade of Haplogroup K- M2313 (a.k.a. NO-M2313, K2a1),[9] which is the sole subclade of Haplogroup K2a (K-M2308).[6] NO is the dominant Y-DNA haplogroup in most parts of eastern and northern Eurasia, including East Asia, Siberia and northern Fennoscandia.

The location of NO1 at the SNP M214 follows the taxonomy set out by Karmin et al. 2022,[9] and conforms to a structure shown by ISOGG (2022).[8] (However neither Karmin nor ISOGG has integrated one of the findings of Poznik et al. 2016:[6] that there was a subclade generation both above haplogroup NO1 (M214) and beneath K-M2308. That is, both ISOGG and Karmin et al. continued to equate K2a with haplogroup NO.)

Before 2016, the subclades compromising both NO and NO1 were not recognised, and were regarded as synonymous with K2a.[6] Researchers such as David Poznik (Poznik et al. 2016) documented examples of previously unknown subclades of haplogroup K2, in both ancient remains and living individuals, which: (firstly) had several, varying suites of the SNPs regarded previously as uniquely defining K2a and NO, but also (secondly) lacked any of the SNPs specifically identifying haplogroups Haplogroup N (M231) and Haplogroup O (M175).[6] This demonstrated conclusively that multiple stages of development separated K2a from NO, which therefore constituted "grandparent" and "grandchild" clades. Poznik et al. 2016 used the name "K2a1" (a.k.a. K-M2313) for the Y-DNA of some of the individuals who belonged to K2a(xK2a*,NO), while also mentioning that K-M2313 did not include all examples of K2a(xK2a*,NO).

As of 2022, the International Society of Genetic Genealogy (ISOGG) refers to NO-M214 as "NO1", and to K2a (M2308)/K-M2313 as "NO".[8] There may be at least one other primary branch of NO: the ISOGG official Y-DNA haplogroup tree lists a haplogroup known as "NO1~" [sic] (CTS707/M2306) alongside NO-M214 (which ISOGG refers to as "NO1").[8] The tilde (~) indicates that its exact position of NO1~ in the phylogeny is unknown. It may be a primary branch or sibling of NO, it may be a primary branch or sibling of K2a, K-M2313, or it may instead be a primary branch of K2a.

Based on the projected origins of K2a, K-M2313, and the basal haplogroups N* and O* respectively, NO* probably originated in East Asia.[5][6]

Distribution

Migration of Haplogroup NO.[10]

While there is some evidence of NO* being found in living individuals, these examples are not well-researched. Further research may instead identify them as belonging to N* (M231), N1, or the provisional subclade N2 (F3373/M2283/Page56/S323).[11][12] These cases include:

  • 5.7% (2/35) of Bouyei males, in China or Vietnam;[12]
  • a pool of four samples of Japanese males at 2.9% (6/210), particularly in Tokushima Prefecture at a rate of 5.7% (4/70),[11] and;
  • small proportions of samples from Yizu,[11] Malays, Sô, Mongolians,[11] Daurs,[12] Manchurian Evenks,[12] Hezhes,[12] Huis,[12] Yaos,[12] South Korea ns,[12] Fiji (1/107 = 0.9%), Futuna 5%, Niue 3.5%, Tuvalu 3.6%, and Samoa 3%.

Members of Haplogroup NO* include a Telugu of Indian origin sampled in the United Kingdom and a Malay sampled in Singapore.[6][1]

Two sets of ancient remains previously considered as possibly belonging to NO have since been reclassified upstream to K2a.[citation needed]

  • Ust'-Ishim man dates from approximately 45,000 BP and was found in Omsk Oblast, Russia.[13] (Until 2016 these remains were erroneously classified as K2*.)
  • Oase 1: the remains found in Romania of a male who lived 37,000-42,000 years BP.[14]

Likewise, cases previously regarded as possible examples of NO* or NO1*, and since ruled out, include:

  • two Han Chinese males previously found to be negative for M175 (i.e. Haplogroup O) and LLY22g (an obsolete, possibly inaccurate marker for N1), have subsequently have been found to belong to N* (N-M231),[15] and;
  • a clade first identified in South India, defined by the SNP M147 and labelled "pre-NO" and "Haplogroup X", among other names, was found to be a sibling of NO (K2a) within Haplogroup K2 (K-M526); the new clade was renamed K2e.[citation needed]

Subclades

Phylogenetic tree

This phylogeny of haplogroups K2a, K2a1, and NO is based on YFull 2018,[1] Poznik 2016, ISOGG 2018, Karafet 2008.[6][8][16]

K2a K-M2308 (M2308) Found only in the ancient remains "Ust'-Ishim man" (c. 45,000 BP) and "Oase 1" (c. 39,500 BP).[6]

  • K2a1 K-M2313 (M2313/Z4858) [6] Named by Poznik 2016; previously not distinguished from K2a.
    • NO K-M214 (M214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572) [1][6][8] Poznik 2016 and ISOGG 2018 distinguish between NO1 (M214), N and O.
        • N M231; CTS2947/M2175; Z4891; CTS10118 [1]
        • O M175/P186/P191/P196; F369/M1755; F380/M1757/S27659 [1]

The position of NO1~ (CTS707/M2306), a subclade of K2a1 or NO, in this phylogeny is unclear.[8]

See also


References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 YFull YTree v5.08, 2017, "K-M2335" (9 December 2017); PhyloTree, 2017, "Details of the Y-SNP markers included in the minimal Y tree" (9 December 2017); GeneticHomeland.com, 2016, DNA Marker Index Chromosome Y V4208 (9 December 2017).
  2. ↑ 2.0 2.1 YFull Haplogroup YTree v5.06 at 25 September 2017
  3. ↑ 3.0 3.1 Karmin, MonikaExpression error: Unrecognized word "etal". (2015). "", "A recent bottleneck of Y chromosome diversity coincides with a global change in culture". Genome Research 25 (4): 459–466. doi:10.1101/gr.186684.114. PMID 25770088. 
  4. ↑ 4.0 4.1 G. David Poznik, Yali Xue, Fernando L. Mendez, et al., 2016, "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences." Nature Genetics vol. 48, no. 6 (June): pp. 593–599. doi:10.1038/ng.3559.
  5. ↑ 5.0 5.1 Rootsi, Siiri et al. (2007). "A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe". European Journal of Human Genetics 15 (2): 204–211. doi:10.1038/sj.ejhg.5201748. PMID 17149388. 
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 G. David Poznik et al., 2016, "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences" Nature Genetics, no. 48, pp. 593–599.
  7. ↑ 『DNA・考古・言語の学際研究が示す新・日本列島史 日本人集団・日本語の成立史』
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 ISOGG, Y-DNA Haplogroup Tree 2018 (17 January 2018).
  9. ↑ 9.0 9.1 Monika Karmin et al., 2022, "Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages", Molecular Biology and Evolution, vol. 39, i. 3 (March). (Access: 25 January 2023.)
  10. ↑ Wang, Chuan-Chao; Li, Hui (2013-06-03). "Inferring human history in East Asia from Y chromosomes". Investigative Genetics 4 (1): 11. doi:10.1186/2041-2223-4-11. ISSN 2041-2223. PMID 23731529. 
  11. ↑ 11.0 11.1 11.2 11.3 Hammer et al. (2005) "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes," The Japan Society of Human Genetics, 2005
  12. ↑ 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 Xue, Yali; Zerjal, Tatiana; Bao, Weidong; Zhu, Suling; Shu, Qunfang; Xu, Jiujin; Du, Ruofu; Fu, Songbin et al. (2006). "Male demography in East Asia: a north-south contrast in human population expansion times". Genetics 172 (4): 2431–2439. doi:10.1534/genetics.105.054270. PMID 16489223. PMC 1456369. http://www.genetics.org/cgi/content/abstract/genetics.105.054270v1. 
  13. ↑ "Archived copy". http://www.nature.com/nature/journal/v514/n7523/extref/nature13810-s1.pdf. 
  14. ↑ Poznik, GD; Xue, Y; Mendez, FL; Willems, TF; Massaia, A; Wilson Sayres, MA; Ayub, Q; McCarthy, SA et al. (2016). "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences". Nat Genet 48 (6): 593–9. doi:10.1038/ng.3559. PMID 27111036. 
  15. ↑ Tatiana M. Karafet, Brian Hallmark, Murray P. Cox et al., "Major East-West Division Underlies Y Chromosome Stratification Across Indonesia," MBE Advance Access published March 5, 2010.
  16. ↑ Karafet et al. (2008). "Abstract New Binary Polymorphisms Reshape and Increase Resolution of the Human Y-Chromosomal Haplogroup Tree". Genome Research 18 (5): 830–8. doi:10.1101/gr.7172008. PMID 18385274. PMC 2336805. http://www.genome.org/cgi/content/abstract/gr.7172008v1. 

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