Biology:Korean Genome Project
Korean Genome Project (KGP) is the largest Korean Genome Project which currently includes over 10,000 human genomes sequenced in Korea by April 2021.
KGP was originated from the national initiative of sequencing the reference Korean and whole population genomes in 2006 by KOBIC, KRIBB and NCSRD, KRISS, Daejeon in Korea. From 2009, KGP was supported by the Genome Research Foundation and TheragenEtex to build the Variome of Koreans as well as the Korean Reference Genome (KOREF). Starting from KOREF, a consensus variome reference, providing information on millions of variants from 40 additional ethnically homogeneous genomes from the Korean Personal Genome Project was completed in 2017.[1] Updating the technology an improved version of KOREF was then constructed using long-read sequencing data produced by Oxford Nanopore PromethION and PacBio technologies has been released showcasing newer assembly technologies and techniques.[2] In 2022 a new chromosome-level haploid assembly of KOREF was published, assembled using Oxford Nanopore Technologies PromethION, Pacific Biosciences HiFi-CCS, and Hi-C technology.[3]
Since 2014, KGP has been supported by Ulsan National Institute of Science and Technology, Clinomics, and Ulsan City, Ulsan, Korea. KGP released 1,094 Korean whole genome sequences (the Korea1K or KGP 1000 project) on 27 May 2020 in Science Advances.[4] Having a stable, high-quality reference, KOREF has been used to benchmark sequencing technologies such as MGI DNBSEQ-T7 and Illumina HiSeq2000, HiSeq2500, HiSeq4000, HiSeqX10, and NovaSeq6000 sequencing technologies.[5] The variome data has already been a useful reference to study the origin and composition of Korean ethnicity when compared to ancient DNA sequences.[6]
References
- ↑ Cho, Yun Sung; Kim, Hyunho; Kim, Hak-Min; Jho, Sungwoong; Jun, JeHoon; Lee, Yong Joo; Chae, Kyun Shik; Kim, Chang Geun et al. (2016-11-24). "An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes" (in en). Nature Communications 7 (1): 13637. doi:10.1038/ncomms13637. ISSN 2041-1723. PMID 27882922. Bibcode: 2016NatCo...713637C.
- ↑ Kim, Hui-Su; Jeon, Sungwon; Kim, Changjae; Kim, Yeon Kyung; Cho, Yun Sung; Kim, Jungeun; Blazyte, Asta; Manica, Andrea et al. (2019-12-01). "Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information" (in en). GigaScience 8 (12). doi:10.1093/gigascience/giz125. PMID 31794015.
- ↑ Kim, Hui-su; Jeon, Sungwon; Kim, Yeonkyung; Kim, Changjae; Bhak, Jihun; Bhak, Jong (2022-01-01). "KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods". GigaScience 11: giac022. doi:10.1093/gigascience/giac022. ISSN 2047-217X. PMID 35333300. PMC 8952264. https://doi.org/10.1093/gigascience/giac022.
- ↑ Jeon, Sungwon; Bhak, Youngjune; Choi, Yeonsong; Jeon, Yeonsu; Kim, Seunghoon; Jang, Jaeyoung; Jang, Jinho; Blazyte, Asta et al. (2020-05-01). "Korean Genome Project: 1094 Korean personal genomes with clinical information" (in en). Science Advances 6 (22): eaaz7835. doi:10.1126/sciadv.aaz7835. ISSN 2375-2548. PMID 32766443. Bibcode: 2020SciA....6.7835J.
- ↑ Kim, Hak-Min; Jeon, Sungwon; Chung, Oksung; Jun, Je Hoon; Kim, Hui-Su; Blazyte, Asta; Lee, Hwang-Yeol; Yu, Youngseok et al. (2021-03-01). "Comparative analysis of 7 short-read sequencing platforms using the Korean Reference Genome: MGI and Illumina sequencing benchmark for whole-genome sequencing". GigaScience 10 (giab014). doi:10.1093/gigascience/giab014. ISSN 2047-217X. PMID 33710328.
- ↑ Kim, Jungeun; Jeon, Sungwon; Choi, Jae-Pil; Blazyte, Asta; Jeon, Yeonsu; Kim, Jong-Il; Ohashi, Jun; Tokunaga, Katsushi et al. (2020-05-01). "The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences". Genome Biology and Evolution 12 (5): 553–565. doi:10.1093/gbe/evaa062. ISSN 1759-6653. PMID 32219389.
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