Biology:Cable bacteria

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Cable bacteria in between two layers of sediment split apart inside a glass cylinder.
Diagram demonstrating cable bacteria metabolism in surface sediment. Hydrogen sulfide (H2S) is oxidized in the sulfidic sediment layer, and the resulting electrons (e−) are conducted up through the cable bacteria filament to the oxic layer and used to reduce molecular oxygen (O2).

Cable bacteria are filamentous bacteria that conduct electricity across distances over 1 cm in sediment and groundwater aquifers.[1][2] Cable bacteria allow for long-distance electron transport, which connects electron donors to electron acceptors, connecting previously separated oxidation and reduction reactions.[3] Cable bacteria couple the reduction of oxygen[2] or nitrate[4] at the sediment's surface to the oxidation of sulfide[2] in the deeper, anoxic, sediment layers.

Discovery

Long-distance electrical conductance in sediment was first observed in 2010 as a spatial separation of sulfide oxidation and oxygen reduction in marine sediment that was interrupted and re-established at a rate faster than could be explained by chemical diffusion.[1] It was later found that this electrical conductance could be observed across a non-conductive layer of glass microspheres, where the only possible conductive structures were filamentous bacteria belonging to the family Desulfobulbaceae.[2] The conductivity of single, live filaments was later demonstrated by observing the oxidation state of cytochromes using Raman microscopy.[5] The same phenomenon was later observed in freshwater sediments[6] and groundwater aquifers.[7] Within a 15 cm thick top layer of sediment, cable bacteria densities providing total length of up to 2 km per square centimeter of surface have been observed.[8]

Morphology

Cable bacteria filaments have a diameter of 1–4 µm and lengths of over 1 cm.[9] The individual cells in the filaments are rod-shaped with an average length of 3 µm.[2] As Gram-negative bacteria, they have two cell-enveloping membranes, with each cell having its own individual inner cell membrane, but the outer cell membrane is shared by all cells in a filament.[2] In the common periplasm there are around 15–60[2][9] electron-conducting fibers with a diameter of around 50 nm, which are visible from the outside as parallel, longitudinal ribs. They consist of proteins that are rich in nickel and sulfur, are electrically insulated, and run the entire length of the cell filament.[9]

Distribution

Cable bacteria are generally found in reduced sediments.[10] They can be present as a single filament or as an agglomeration of filaments.[10] Cable bacteria have been identified as being intertwined with the root hairs of aquatic plants and are present in the rhizosphere.[10] Their distribution ranges a gradient of salinities; they are present in freshwater, saltwater lakes, and marine habitats.[11][12] Cable bacteria have been identified in a diverse range of climatic conditions worldwide,[13] including Denmark ,[2][6] the Netherlands,[14] Japan ,[15] Australia ,[16] and the United States .[17]

Motility

Cable bacteria lack flagella, but are capable of motility in the form of gliding[18] by propelling themselves forward through the excretion of substances.[19] Cable bacteria have been observed to move as fast as 2.2 µm/s, with an average speed of 0.5 µm/s.[18] Speed of motility in cable bacteria is not related to size of the bacteria.[18] The average distance a cable bacterium glides is approximately 74 µm without interruption.[18] Cable bacteria filaments tend to bend in half, and their movement is led by the apex of the bend as opposed to leading with one tip of the filament.[18] Twisting to move through rotational gliding is rare, but does occur.[18] Cable bacteria likely engage in oxygen chemotaxis, as they are observed to move when in anoxic or hypoxic environments, and cease gliding when contact with oxygen is made.[18] Although motility is important for other microorganisms, once cable bacteria are located in a place that connects oxygen to sulfide, they no longer need to move.[18] The reduced need for motility could explain why the cable bacteria genome contains fewer operons related to chemotaxis than other Desulfobulbaceae.[19] Fewer operons related to chemotaxis results in limited motility.[19]

Taxonomy

The two candidate genera of cable bacteria until now (2016) described: Electrothrix containing four candidate species, found in marine or brackish sediments, and Electronema containing two candidate species, found in freshwater sediments, seem to be a monophyletic group.[15] Freshwater and marine cable bacteria have been found to be 88% similar based on 16S ribosomal RNA comparisons.[20] These genera are classified within the family Desulfobulbaceae.[19] Cable bacteria are defined by their function rather than their phylogeny, and it is possible that further cable bacteria taxa will be discovered.

Ecological significance

Cable bacteria strongly influence the geochemical properties of the surrounding environment. Their activity promotes the oxidation of iron at the surface of the sediment, and the resulting iron oxides bind phosphorus-containing compounds[21] and hydrogen sulfide,[22] limiting the amount of phosphorus and hydrogen sulfide in the water. Phosphorus can cause eutrophication, and hydrogen sulfide can be toxic to marine life, meaning that cable bacteria play an important role in maintaining marine ecosystems in coastal areas.

Methane emissions

The presence of cable bacteria can lead to a decrease in methane emissions from saturated soils. The transfer of electrons through cable bacteria allows the sulfate reduction that occurs in inundated soils to be balanced by sulfide oxidation. Oxidation is possible because of the release of electrons through the cable bacteria filaments. Through this balance, sulfate remains readily available for sulfate reducing bacteria, which out compete methanogens. This causes a decrease in production of methane by methanogens.[23]

Practical applications

Cable bacteria have been found associated with benthic microbial fuel cells, devices that convert chemical energy on the ocean floor to electrical energy.[24] In the future, cable bacteria may play a role in increasing the efficiency of microbial fuel cells deployed in sedimentary environments. Cable bacteria have also been found associated with a bioelectrochemical system that enhances the degradation of marine sediment contaminated by hydrocarbons [25] and thus may play a role in future oil spill cleanup technologies.

See also

  • Biodegradable electronics

References

  1. ↑ 1.0 1.1 "Electric currents couple spatially separated biogeochemical processes in marine sediment". Nature 463 (7284): 1071–4. February 2010. doi:10.1038/nature08790. PMID 20182510. Bibcode: 2010Natur.463.1071N. 
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 "Filamentous bacteria transport electrons over centimetre distances". Nature 491 (7423): 218–21. November 2012. doi:10.1038/nature11586. PMID 23103872. Bibcode: 2012Natur.491..218P. 
  3. ↑ "Rethinking sediment biogeochemistry after the discovery of electric currents". Annual Review of Marine Science 7: 425–42. 2015. doi:10.1146/annurev-marine-010814-015708. PMID 25251266. Bibcode: 2015ARMS....7..425N. 
  4. ↑ "Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment". The ISME Journal 8 (8): 1682–90. August 2014. doi:10.1038/ismej.2014.19. PMID 24577351. 
  5. ↑ "Long-distance electron transport in individual, living cable bacteria". Proceedings of the National Academy of Sciences of the United States of America 115 (22): 5786–5791. May 2018. doi:10.1073/pnas.1800367115. PMID 29735671. Bibcode: 2018PNAS..115.5786B. 
  6. ↑ 6.0 6.1 "Cable Bacteria in Freshwater Sediments". Applied and Environmental Microbiology 81 (17): 6003–11. September 2015. doi:10.1128/AEM.01064-15. PMID 26116678. Bibcode: 2015ApEnM..81.6003R. 
  7. ↑ "Long-distance electron transfer by cable bacteria in aquifer sediments". The ISME Journal 10 (8): 2010–9. August 2016. doi:10.1038/ismej.2015.250. PMID 27058505. 
  8. ↑ "Succession of cable bacteria and electric currents in marine sediment". The ISME Journal 8 (6): 1314–22. June 2014. doi:10.1038/ismej.2013.239. PMID 24451206. 
  9. ↑ 9.0 9.1 9.2 Boschker, Henricus T. S.; Cook, Perran L.M.; Polerecky, Lubos; Eachambadi, Raghavendran Thiruvallur; Lozano, Helena; Hidalgo-Martinez, Silvia; Khalenkow, Dmitry; Spampinato, Valentina et al. (2020-10-23). "Efficient long-range conduction in cable bacteria through nickel protein wires". http://dx.doi.org/10.1101/2020.10.23.351973. 
  10. ↑ 10.0 10.1 10.2 "The rhizosphere of aquatic plants is a habitat for cable bacteria". FEMS Microbiology Ecology 95 (6). June 2019. doi:10.1093/femsec/fiz062. PMID 31054245. 
  11. ↑ "A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema". Systematic and Applied Microbiology 39 (5): 297–306. July 2016. doi:10.1016/j.syapm.2016.05.006. PMID 27324572. 
  12. ↑ "Cable Bacteria in Freshwater Sediments". Applied and Environmental Microbiology 81 (17): 6003–11. September 2015. doi:10.1128/AEM.01064-15. PMID 26116678. Bibcode: 2015ApEnM..81.6003R. 
  13. ↑ "Long-distance electron transport occurs globally in marine sediments.". Biogeosciences 14 (3): 683–701. 2017. doi:10.5194/bg-14-683-2017. Bibcode: 2017BGeo...14..683B. 
  14. ↑ "Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor". The ISME Journal 8 (9): 1843–54. September 2014. doi:10.1038/ismej.2014.41. PMID 24671086. 
  15. ↑ 15.0 15.1 "A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema". Systematic and Applied Microbiology 39 (5): 297–306. July 2016. doi:10.1016/j.syapm.2016.05.006. PMID 27324572. 
  16. ↑ Smith, Bridie (December 5, 2014). "Shock as scientists find 'electric' bacteria in the Yarra". The Age. https://www.theage.com.au/technology/shock-as-scientists-find-electric-bacteria-in-the-yarra-20141205-121751.html. 
  17. ↑ "Cable bacteria associated with long-distance electron transport in New England salt marsh sediment". Environmental Microbiology Reports 7 (2): 175–9. April 2015. doi:10.1111/1758-2229.12216. PMID 25224178. 
  18. ↑ 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 "Motility of Electric Cable Bacteria". Applied and Environmental Microbiology 82 (13): 3816–21. July 2016. doi:10.1128/AEM.01038-16. PMID 27084019. Bibcode: 2016ApEnM..82.3816B. 
  19. ↑ 19.0 19.1 19.2 19.3 "On the evolution and physiology of cable bacteria". Proceedings of the National Academy of Sciences of the United States of America 116 (38): 19116–19125. September 2019. doi:10.1073/pnas.1903514116. PMID 31427514. Bibcode: 2019PNAS..11619116K. 
  20. ↑ "Cable Bacteria Take a New Breath Using Long-Distance Electricity". Trends in Microbiology 26 (5): 411–422. May 2018. doi:10.1016/j.tim.2017.10.011. PMID 29174100. 
  21. ↑ "Cable Bacteria Control Iron-Phosphorus Dynamics in Sediments of a Coastal Hypoxic Basin". Environmental Science & Technology 50 (3): 1227–33. February 2016. doi:10.1021/acs.est.5b04369. PMID 26720721. Bibcode: 2016EnST...50.1227S. 
  22. ↑ "Cable bacteria generate a firewall against euxinia in seasonally hypoxic basins". Proceedings of the National Academy of Sciences of the United States of America 112 (43): 13278–83. October 2015. doi:10.1073/pnas.1510152112. PMID 26446670. Bibcode: 2015PNAS..11213278S. 
  23. ↑ "Cable bacteria reduce methane emissions from rice-vegetated soils". Nature Communications 11 (1): 1878. April 2020. doi:10.1038/s41467-020-15812-w. PMID 32313021. Bibcode: 2020NatCo..11.1878S. 
  24. ↑ "The Identification of Cable Bacteria Attached to the Anode of a Benthic Microbial Fuel Cell: Evidence of Long Distance Extracellular Electron Transport to Electrodes". Frontiers in Microbiology 8: 2055. 2017. doi:10.3389/fmicb.2017.02055. PMID 29114243. 
  25. ↑ "Cable Bacteria and the Bioelectrochemical Snorkel: The Natural and Engineered Facets Playing a Role in Hydrocarbons Degradation in Marine Sediments". Frontiers in Microbiology 8: 952. 2017. doi:10.3389/fmicb.2017.00952. PMID 28611751. 

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