Biology:Haplogroup E-M329

From HandWiki
Short description: Human Y-chromosome DNA haplogroup
Haplogroup E-M329 (former E3* / E1b1c)
Possible time of origin39,200 years BP[1]
Coalescence age25,700 years BP[1]
Possible place of originEast Africa[2]
AncestorE-V38
DescendantsE-V2403, E-M329*
Defining mutationsM329
Ethiopian spatial distribution of haplogroup E1b1a2-M329 based on Plaster et al. 2011[3][4]

Haplogroup E-M329, also known as E1b1a2, is a human Y-chromosome DNA haplogroup.[lower-alpha 1] E-M329 is mostly found in East Africa.[2]

Origin

Trombetta et al. (2011) suggested an origin in East Africa:

The new topology here reported has important implications as to the origins of the haplogroup E-P2. Using the principle of the phylogeographic parsimony, the resolution of the E-M215 trifurcation in favor of a common ancestor of E-M2 and E-M329 strongly supports the hypothesis that haplogroup E-P2 originated in eastern Africa, as previously suggested, and that chromosomes E-M2, so frequently observed in sub-Saharan Africa, trace their descent to a common ancestor present in eastern Africa.[2]

Distribution

E-M329 is mostly found in East Africa.[2] E-M329 is frequent in Southwestern Ethiopia, especially among Omotic-speaking populations.[3][4] Semino et al. (2004) found 2 cases of E-M329 in Ethiopian Oromo, out of 2400 individuals, including 78 Oromo.[5] Cadenas et al. (2007) found one case of E-M329, out of 72 people, in Qatar.[6]

Subclades

E-V2403

E-V2403 is a subclade of haplogroup E-M329.[1]

E-M329*

E-M329* is a subclade of haplogroup E-M329.[1]

Phylogenetics

Phylogenetic history

Main page: Biology:Conversion table for Y chromosome haplogroups

Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

YCC 2002/2008 (Shorthand) (α) (β) (γ) (δ) (ε) (ζ) (η) YCC 2002 (Longhand) YCC 2005 (Longhand) YCC 2008 (Longhand) YCC 2010r (Longhand) ISOGG 2006 ISOGG 2007 ISOGG 2008 ISOGG 2009 ISOGG 2010 ISOGG 2011 ISOGG 2012
E-P29 21 III 3A 13 Eu3 H2 B E* E E E E E E E E E E
E-M33 21 III 3A 13 Eu3 H2 B E1* E1 E1a E1a E1 E1 E1a E1a E1a E1a E1a
E-M44 21 III 3A 13 Eu3 H2 B E1a E1a E1a1 E1a1 E1a E1a E1a1 E1a1 E1a1 E1a1 E1a1
E-M75 21 III 3A 13 Eu3 H2 B E2a E2 E2 E2 E2 E2 E2 E2 E2 E2 E2
E-M54 21 III 3A 13 Eu3 H2 B E2b E2b E2b E2b1 - - - - - - -
E-P2 25 III 4 14 Eu3 H2 B E3* E3 E1b E1b1 E3 E3 E1b1 E1b1 E1b1 E1b1 E1b1
E-M2 8 III 5 15 Eu2 H2 B E3a* E3a E1b1 E1b1a E3a E3a E1b1a E1b1a E1b1a E1b1a1 E1b1a1
E-M58 8 III 5 15 Eu2 H2 B E3a1 E3a1 E1b1a1 E1b1a1 E3a1 E3a1 E1b1a1 E1b1a1 E1b1a1 E1b1a1a1a E1b1a1a1a
E-M116.2 8 III 5 15 Eu2 H2 B E3a2 E3a2 E1b1a2 E1b1a2 E3a2 E3a2 E1b1a2 E1b1a2 E1ba12 removed removed
E-M149 8 III 5 15 Eu2 H2 B E3a3 E3a3 E1b1a3 E1b1a3 E3a3 E3a3 E1b1a3 E1b1a3 E1b1a3 E1b1a1a1c E1b1a1a1c
E-M154 8 III 5 15 Eu2 H2 B E3a4 E3a4 E1b1a4 E1b1a4 E3a4 E3a4 E1b1a4 E1b1a4 E1b1a4 E1b1a1a1g1c E1b1a1a1g1c
E-M155 8 III 5 15 Eu2 H2 B E3a5 E3a5 E1b1a5 E1b1a5 E3a5 E3a5 E1b1a5 E1b1a5 E1b1a5 E1b1a1a1d E1b1a1a1d
E-M10 8 III 5 15 Eu2 H2 B E3a6 E3a6 E1b1a6 E1b1a6 E3a6 E3a6 E1b1a6 E1b1a6 E1b1a6 E1b1a1a1e E1b1a1a1e
E-M35 25 III 4 14 Eu4 H2 B E3b* E3b E1b1b1 E1b1b1 E3b1 E3b1 E1b1b1 E1b1b1 E1b1b1 removed removed
E-M78 25 III 4 14 Eu4 H2 B E3b1* E3b1 E1b1b1a E1b1b1a1 E3b1a E3b1a E1b1b1a E1b1b1a E1b1b1a E1b1b1a1 E1b1b1a1
E-M148 25 III 4 14 Eu4 H2 B E3b1a E3b1a E1b1b1a3a E1b1b1a1c1 E3b1a3a E3b1a3a E1b1b1a3a E1b1b1a3a E1b1b1a3a E1b1b1a1c1 E1b1b1a1c1
E-M81 25 III 4 14 Eu4 H2 B E3b2* E3b2 E1b1b1b E1b1b1b1 E3b1b E3b1b E1b1b1b E1b1b1b E1b1b1b E1b1b1b1 E1b1b1b1a
E-M107 25 III 4 14 Eu4 H2 B E3b2a E3b2a E1b1b1b1 E1b1b1b1a E3b1b1 E3b1b1 E1b1b1b1 E1b1b1b1 E1b1b1b1 E1b1b1b1a E1b1b1b1a1
E-M165 25 III 4 14 Eu4 H2 B E3b2b E3b2b E1b1b1b2 E1b1b1b1b1 E3b1b2 E3b1b2 E1b1b1b2a E1b1b1b2a E1b1b1b2a E1b1b1b2a E1b1b1b1a2a
E-M123 25 III 4 14 Eu4 H2 B E3b3* E3b3 E1b1b1c E1b1b1c E3b1c E3b1c E1b1b1c E1b1b1c E1b1b1c E1b1b1c E1b1b1b2a
E-M34 25 III 4 14 Eu4 H2 B E3b3a* E3b3a E1b1b1c1 E1b1b1c1 E3b1c1 E3b1c1 E1b1b1c1 E1b1b1c1 E1b1b1c1 E1b1b1c1 E1b1b1b2a1
E-M136 25 III 4 14 Eu4 H2 B E3ba1 E3b3a1 E1b1b1c1a E1b1b1c1a1 E3b1c1a E3b1c1a E1b1b1c1a1 E1b1b1c1a1 E1b1b1c1a1 E1b1b1c1a1 E1b1b1b2a1a1

Research publications

The following research teams per their publications were represented in the creation of the YCC tree.


Phylogenetic trees

This phylogenetic tree of haplogroup subclades is based on the Y-Chromosome Consortium (YCC) 2008 Tree,[7] the ISOGG Y-DNA Haplogroup E Tree,[8] and subsequent published research.

  • E1b1a (L222.1, V38, V100)
    • E1b1a1 (DYS271/M2/SY81, M291, P1/PN1, P189, P293, V43, V95, Z1101, Z1107, Z1116, Z1120, Z1122, Z1123, Z1124, Z1125, Z1127, Z1130, Z1133)
    • E1b1a2 (M329)

See also

Genetics

Y-DNA E subclades

Y-DNA backbone tree

Notes

  1. ↑ E-M329 is formerly known as E1b1c.

References

  1. ↑ 1.0 1.1 1.2 1.3 "E-M329 YTree". https://www.yfull.com/tree/E-M329/. 
  2. ↑ 2.0 2.1 2.2 2.3 Trombetta, Beniamino; Fulvio Cruciani; Daniele Sellitto; Rosaria Scozzari (6 January 2011). MacAulay, Vincent. ed. "A New Topology of the Human Y Chromosome Haplogroup E1b1 (E-P2) Revealed through the Use of Newly Characterized Binary Polymorphisms". PLOS ONE 6 (1): e16073. doi:10.1371/journal.pone.0016073. PMID 21253605. Bibcode: 2011PLoSO...616073T. 
  3. ↑ 3.0 3.1 "Plaster et al. Y-DNA E subclades predicted by Passa". https://docs.google.com/spreadsheets/d/1hHEJ6z1_QPwYRyPAgYLEb_dt5fRBITrKvI0ezByNvTk/edit#gid=671929667. 
  4. ↑ 4.0 4.1 C.A., Plaster (2011-09-28). Variation in Y chromosome, mitochondrial DNA and labels of identity on Ethiopia. discovery.ucl.ac.uk (Doctoral). Retrieved 2018-06-27.
  5. ↑ Semino, Ornella; Magri, C; Benuzzi, G; Lin, AA; Al-Zahery, N; Battaglia, V; MacCioni, L; Triantaphyllidis, C et al. (2004). "Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area". American Journal of Human Genetics 74 (5): 1023–1034. doi:10.1086/386295. PMID 15069642. 
  6. ↑ Cadenas, Alicia M.; Lev A Zhivotovsky, Luca L Cavalli-Sforza, Peter A Underhill and Rene J Herrera (10 October 2007). "Y-chromosome diversity characterizes the Gulf of Oman". European Journal of Human Genetics 16 (3): 374–386. doi:10.1038/sj.ejhg.5201934. PMID 17928816. 
  7. ↑ Karafet, Tatiana M.; Fernando L. Mendez; Monica B. Meilerman; Peter A. Underhill; Stephen L. Zegura; Michael F. Hammer (May 2008). "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". Genome Research 18 (5): 830–838. doi:10.1101/gr.7172008. PMID 18385274. PMC 2336805. http://genome.cshlp.org/content/early/2008/04/02/gr.7172008.short. 
  8. ↑ International Society of Genetic Genealogy (3 February 2010). "Y-DNA Haplogroup E and its Subclades – 2010". http://www.isogg.org/tree/ISOGG_HapgrpE.html. 

Sources for conversion tables



Retrieved from "https://handwiki.org/wiki/index.php?title=Biology:Haplogroup_E-M329&oldid=3557892"