Biology:PPT-DB

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PPT DB website home page

The Protein Property Prediction and Testing Database (PPT-DB) is a collection of protein property databases for over 20 different protein properties including secondary structure, trans-membrane helices and beta barrels, accessible surface area, signal peptides, and more. PPT-DB is published in 2008. Its protocol is available via PPT-DB website [1]

Database

  1. All Properties
  2. 2° Structure (cytoplasmic)
  3. EVA 2o Structure Test Set
  4. 2° Structure (membrane helix)
  5. TMH Benchmark Test Set
  6. 2° Structure (membrane barrel)
  7. 2° Structure (cytoplasmic)
  8. Beta Turns
  9. Coiled-coil
  10. Edge/Central Beta Strands
  11. Beta Hairpins
  12. Disulfide Bonds
  13. SPdb (Eukaryotic)
  14. SPdb (Gram+)
  15. SPdb (Gram-)
  16. Signal Peptide (Eukaryotic)
  17. Signal Peptide (Gram+)
  18. Signal Peptide (Gram-)
  19. Accessible Surface Area (%)
  20. Accessible Surface Area (Integerized)
  21. B-factor (Real value)
  22. B-factor (Integerized)
  23. RMSF (Real value)
  24. RMSF (Integerized)
  25. Order Parameter (Calculated)
  26. Order Parameter (Integerized)
  27. Contact Order
  28. Folding Rate
  29. 3D Folding Decoys
  30. Amyloidogenic Proteins

References

  1. ↑ David S. Wishart, David Arndt, Mark Berjanskii, An Chi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou and Guohui Lin: PPT-DB: the protein property prediction and testing database. Nucleic Acids Research 2008 36(Database issue):D222-D229.

See also




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