Biology:Solirubrobacter

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Short description: Genus of bacteria

Solirubrobacter
Scientific classification e
Domain: Bacteria
Phylum: Actinomycetota
Class: Thermoleophilia
Order: Solirubrobacterales
Family: Solirubrobacteraceae
Stackebrandt 2005[2]
Genus: Solirubrobacter
Singleton et al. 2003[1]
Type species
Solirubrobacter pauli[3]
Singleton et al. 2003
Species

Solirubrobacter is a Gram-positive, spore-forming, aerobic, mesophilic and non-motile genus of bacteria from the family Solirubrobacteraceae.[3][4][5][6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[7]

16S rRNA based LTP_08_2023[8][9][10] 120 marker proteins based GTDB 08-RS214[11][12][13]
Solirubrobacter
 
 

S. ginsenosidimutans An et al. 2011

 
 

S. soli Kim et al. 2007

 
 
 
 

S. taibaiensis Zhang et al. 2014

 
 
 

S. pauli Singleton et al. 2003

 
 

S. phytolaccae Wei et al. 2014

 
 
 
 
Solirubrobacter
 

S. pauli

 
 

S. soli

 
 

References

  1. ↑ "Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones". Int J Syst Evol Microbiol 53 (Pt 2): 485–490. 2003. doi:10.1099/ijs.0.02438-0. PMID 12710617. 
  2. ↑ Stackebrandt E. (2004). "Will we ever understand? The undescribable diversity of the prokaryotes". Acta Microbiol Immunol Hung 51 (4): 449–462. doi:10.1556/AMicr.51.2004.4.5. PMID 15704333. 
  3. ↑ 3.0 3.1 3.2 "Solirubrobacter". https://lpsn.dsmz.de/genus/solirubrobacter. 
  4. ↑ (in en) Solirubrobacter. https://www.uniprot.org/taxonomy/207599. 
  5. ↑ Parker, Charles Thomas; Garrity, George M (2008). "Nomenclature Abstract for Solirubrobacter." (in en). The NamesforLife Abstracts. doi:10.1601/nm.5728. 
  6. ↑ Whitman, William B. (2015). "Solirubrobacter" (in en). Bergey's Manual of Systematics of Archaea and Bacteria (John Wiley & Sons, Ltd): 1–5. doi:10.1002/9781118960608.gbm00227. ISBN 9781118960608. 
  7. ↑ Sayers. "Solirubrobacter". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=207599&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  8. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  9. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree. 
  10. ↑ "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf. 
  11. ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C. 
  12. ↑ "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree. 
  13. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

  • Singleton, DR; Furlong, MA; Peacock, AD; White, DC; Coleman, DC; Whitman, WB (March 2003). "Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones.". International Journal of Systematic and Evolutionary Microbiology 53 (Pt 2): 485–90. doi:10.1099/ijs.0.02438-0. PMID 12710617. 
  • Kim, MK; Na, JR; Lee, TH; Im, WT; Soung, NK; Yang, DC (July 2007). "Solirubrobacter soli sp. nov., isolated from soil of a ginseng field.". International Journal of Systematic and Evolutionary Microbiology 57 (Pt 7): 1453–5. doi:10.1099/ijs.0.64715-0. PMID 17625174. 
  • Zhang, Lei; Zhu, Lingfang; Si, Meiru; Li, Changfu; Zhao, Liang; Wei, Yahong; Shen, Xihui (21 May 2014). "Solirubrobacter taibaiensis sp. nov., isolated from a stem of Phytolacca acinosa Roxb.". Antonie van Leeuwenhoek 106 (2): 279–285. doi:10.1007/s10482-014-0194-4. PMID 24846053. 
  • Whitman, William B.; Goodfellow, Michael; Kämpfer, Peter; Busse, Hans-Jürgen; Trujillo, Martha E.; Ludwig, Wolfgang; Suzuki, Ken-ichiro (2012) (in en). Bergey's Manual of Systematic Bacteriology: Volume 5: The Actinobacteria. Springer Science & Business Media. ISBN 9780387682334. 
  • Goldman, Emanuel; Green, Lorrence H. (2008) (in en). Practical Handbook of Microbiology, Second Edition. CRC Press. ISBN 9781420009330. 

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