Biology:StarBase (biological database)
 | |
|---|---|
| Content | |
| Description | microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. |
| Contact | |
| Research centre | Sun Yat-sen University |
| Laboratory | Key Laboratory of Gene Engineering of the Ministry of Education |
| Author(s) | Jian-Hua Yang |
| Primary citation | Yang & al. (2011)[1] |
| Release date | 2010 |
| Access | |
| Website | http://starbase.sysu.edu.cn/ |
StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.
See also
References
- ↑ 1.0 1.1 Yang, Jian-Hua; Li Jun-Hao; Shao Peng; Zhou Hui; Chen Yue-Qin; Qu Liang-Hu (Jan 2011). "starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data". Nucleic Acids Res. (England) 39 (Database issue): D202-9. doi:10.1093/nar/gkq1056. PMID 21037263.
- ↑ "starBase or ENCORI: Decoding the Encyclopedia of RNA Interactomes". https://rnasysu.com/encori/.
- ↑ 3.0 3.1 "LncRNABase miRNA-lncRNA interactions: decoding miRNA-lncRNA interaction maps". http://starbase.sysu.edu.cn/mirLncRNA.php.
- ↑ "RBP-LncRNA interactions, starBase: decoding RNA-LncRNA interaction maps". http://starbase.sysu.edu.cn/rbpLncRNA.php.
- ↑ "CeRNABase starBase: Decoding ceRNA regulatory networks from CLIP-Seq (PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data. Competing endogenous RNAs (CeRNAs)". http://starbase.sysu.edu.cn/mrnaCeRNA.php.
- ↑ Li, JH; Liu, S; Zhou, H; Qu, LH; Yang, JH (Dec 1, 2013). "starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.". Nucleic Acids Research 42 (1): D92-7. doi:10.1093/nar/gkt1248. PMID 24297251.
- ↑ "Pan-Cancer ceRNA Regulatory Network. StarBase: Decoding miRNA-target, miRNA-ceRNA and protein-RNA interaction maps from CLIP-Seq(PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data". http://starbase.sysu.edu.cn/ceRNAFunction.php.
External links
 |  |
