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Revision as of 09:04, 22 December 2022 by
Jworkorg
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Bioinformatics
Databases
Sequence databases:
GenBank
,
European Nucleotide Archive
and
DNA Data Bank of Japan
Secondary databases:
UniProt
, database of protein sequences grouping together
Swiss-Prot
,
TrEMBL
and
Protein Information Resource
Other databases:
Protein Data Bank
,
Ensembl
and
InterPro
Specialised genomic databases:
BOLD
,
Saccharomyces Genome Database
,
FlyBase
]],
VectorBase
]],
WormBase
,
PHI-base
,
Arabidopsis Information Resource
and
Zebrafish Information Network
Software
BLAST
Bowtie
Clustal
HMMER
MUSCLE
SAMtools
TopHat
Other
Server:
ExPASy
Ontology:
Gene Ontology
Rosalind (education platform)
Institutions
Broad Institute
Computational Biology Department
(CBD)
Microsoft Research - University of Trento Centre for Computational and Systems Biology
(COSBI)
Database Center for Life Science
(DBCLS)
DNA Data Bank of Japan
(DDBJ)
European Bioinformatics Institute
(EMBL-EBI)
European Molecular Biology Laboratory
(EMBL)
Flatiron Institute
J. Craig Venter Institute
(JCVI)
Max Planck Institute of Molecular Cell Biology and Genetics
(MPI-CBG)
US National Center for Biotechnology Information
(NCBI)
Japanese Institute of Genetics
Netherlands Bioinformatics Centre
(NBIC)
Philippine Genome Center
(PGC)
Scripps Research
Swiss Institute of Bioinformatics
(SIB)
Wellcome Sanger Institute
Whitehead Institute
Organizations
African Society for Bioinformatics and Computational Biology
(ASBCB)
Australia Bioinformatics Resource
(EMBL-AR)
European Molecular Biology network
(EMBnet)
International Nucleotide Sequence Database Collaboration
(INSDC)
International Society for Biocuration
(ISB)
International Society for Computational Biology
(ISCB)
Student Council
(ISCB-SC)
Institute of Genomics and Integrative Biology
(CSIR-IGIB)
Japanese Society for Bioinformatics
(JSBi)
Meetings
Basel Computational Biology Conference
([BC
2
])
European Conference on Computational Biology
(ECCB)
Intelligent Systems for Molecular Biology
(ISMB)
International Conference on Bioinformatics
(InCoB)
ISCB Africa ASBCB Conference on Bioinformatics
Pacific Symposium on Biocomputing
(PSB)
Research in Computational Molecular Biology
(RECOMB)
File formats
CRAM format
FASTA format
FASTQ format
NeXML format
Nexus format
Pileup format
SAM format
Stockholm format
Related topics
Computational biology
List of biological databases
Molecular phylogenetics
Sequencing
Sequence database
Sequence alignment
Category
Commons
Category
:
Biology navbox templates
Hidden category:
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