JAligner

From HandWiki
Revision as of 06:36, 21 July 2022 by imported>John Stpola (link)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

JAligner is an open source Java implementation of the Smith-Waterman algorithm[1] with Gotoh's improvement[2] for biological local pairwise sequence alignment using the affine gap penalty model. It was written by Ahmed Moustafa.

See also

  • Sequence alignment software
  • Clustal

References

  1. ↑ Smith TF and Waterman MS (1981). Identification of common molecular subsequences. J Mol Biol, 147:195-197.
  2. ↑ Gotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol, 162:705-708.

External links




Retrieved from "https://handwiki.org/wiki/index.php?title=JAligner&oldid=96931"