Biography:Sean Eddy

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Sean Eddy
Sean-eddy.jpg
Sean Eddy
Born
Sean Roberts Eddy
Alma mater
Known for
AwardsBen Franklin award (2007)
Scientific career
FieldsComputational Genome Analysis[5]
Institutions
ThesisIntrons in the T-even bacteriophages (1991)
Doctoral advisorLarry Gold[6]
Other academic advisorsJohn Sulston
Richard Durbin
Website

Sean Roberts Eddy is Professor of Molecular & Cellular Biology and of Applied Mathematics at Harvard University. Previously he was based at the Janelia Research Campus from 2006 to 2015[5][7][8] in Virginia. His research interests are in bioinformatics, computational biology and biological sequence analysis.[9][10][11][12] (As of 2016) projects include the use of Hidden Markov models[13][14] in HMMER, Infernal[15] Pfam and Rfam.[16][17][18][19]

Education

Eddy graduated June, 1982 from Marion Center Area High School, Marion Center, Pennsylvania. He then completed a Bachelor of Science in Biology at California Institute of Technology in 1986,[20] followed by a Doctor of Philosophy in molecular biology at the University of Colorado under the supervision of Larry Gold in 1991 studying the T4 phage[6][21][22]

Career

From 1992 to 1995 he was a postdoctoral research fellow at the Medical Research Council (MRC) Laboratory of Molecular Biology (LMB) in Cambridge UK working with John Sulston and Richard Durbin. From 1995 to 2007 he worked at Washington University School of Medicine and has been working for the Howard Hughes Medical Institute since 2000.

Awards and honours

In 2007, Sean was the winner of the Benjamin Franklin Award in Bioinformatics for contributions to Open Access in the Life Sciences.[23]

References

  1. ↑ Finn, R. D.; Clements, J.; Eddy, S. R. (2011). "HMMER web server: Interactive sequence similarity searching". Nucleic Acids Research 39 (Web Server issue): W29–W37. doi:10.1093/nar/gkr367. PMID 21593126. 
  2. ↑ Nawrocki, E. P.; Kolbe, D. L.; Eddy, S. R. (2009). "Infernal 1.0: Inference of RNA alignments". Bioinformatics 25 (10): 1335–1337. doi:10.1093/bioinformatics/btp157. PMID 19307242. 
  3. ↑ Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M. et al. (2004). "The Pfam protein families database". Nucleic Acids Research 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMID 14681378.  open access
  4. ↑ Gardner, P. P.; Daub, J.; Tate, J.; Moore, B. L.; Osuch, I. H.; Griffiths-Jones, S.; Finn, R. D.; Nawrocki, E. P. et al. (2010). "Rfam: Wikipedia, clans and the "decimal" release". Nucleic Acids Research 39 (Database issue): D141–D145. doi:10.1093/nar/gkq1129. PMID 21062808. 
  5. ↑ 5.0 5.1 Sean Eddy publications indexed by Google Scholar
  6. ↑ 6.0 6.1 Eddy, Sean Roberts (1991). Introns in the T-even bacteriophages (PhD thesis). University of Colorado. OCLC 28253022. ProQuest 303935681.
  7. ↑ Anon (2012). "HHMI Scientist Bio: Sean R. Eddy, Ph.D.". Archived from the original on 2012-03-05. https://www.webcitation.org/65wlV8IAr?url=http://www.hhmi.org/research/groupleaders/eddy_bio.html. 
  8. ↑ Kaplan, Karen (2011). "A roll of the dice: Sean Eddy has his dream job". Nature 479 (7373): 433–435. doi:10.1038/nj7373-433a. PMID 22106470. 
  9. ↑ Durbin, Richard M.; Eddy, Sean R.; Krogh, Anders; Mitchison, Graeme (1998), Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1st ed.), Cambridge, New York: Cambridge University Press, doi:10.2277/0521629713, ISBN 0-521-62971-3, OCLC 593254083, http://www.cambridge.org/gb/knowledge/isbn/item1158701 
  10. ↑ Rivas, E.; Lang, R.; Eddy, S. R. (2011). "A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more". RNA 18 (2): 193–212. doi:10.1261/rna.030049.111. PMID 22194308. 
  11. ↑ Lander, E. S.; Linton, M.; Birren, B.; Nusbaum, C.; Zody, C.; Baldwin, J.; Devon, K.; Dewar, K. et al. (Feb 2001). "Initial sequencing and analysis of the human genome". Nature 409 (6822): 860–921. doi:10.1038/35057062. ISSN 0028-0836. PMID 11237011. https://deepblue.lib.umich.edu/bitstream/2027.42/62798/1/409860a0.pdf. 
  12. ↑ "Sean Eddy's homepage". Archived from the original on 2010-12-04. https://web.archive.org/web/20101204101639/http://selab.janelia.org/people/eddys/. 
  13. ↑ Eddy, S. R. (2004). "What is a hidden Markov model?". Nature Biotechnology 22 (10): 1315–1316. doi:10.1038/nbt1004-1315. PMID 15470472. 
  14. ↑ Eddy, S. (1998). "Profile hidden Markov models". Bioinformatics 14 (9): 755–763. doi:10.1093/bioinformatics/14.9.755. PMID 9918945. 
  15. ↑ "Sean Eddy's blog". http://cryptogenomicon.org. 
  16. ↑ Eddy, S. R. (2012). "The C-value paradox, junk DNA and ENCODE". Current Biology 22 (21): R898–R899. doi:10.1016/j.cub.2012.10.002. PMID 23137679. 
  17. ↑ Sean Eddy's publications indexed by the Scopus bibliographic database. (Subscription content?)
  18. ↑ Reading Genomes Bit by Bit - Sean Eddy on YouTube, GenomeTV
  19. ↑ Sean Eddy Keynote OBF BOSC on YouTube, 2013-07-20
  20. ↑ "Sean Eddy CV". Archived from the original on 2012-03-09. https://web.archive.org/web/20120309235306/http://selab.janelia.org/people/eddys/cv.pdf. 
  21. ↑ Eddy, S. R.; Gold, L. (1991). "The phage T4 nrdB intron: A deletion mutant of a version found in the wild". Genes & Development 5 (6): 1032–1041. doi:10.1101/gad.5.6.1032. PMID 2044951. 
  22. ↑ Tuerk, C.; Eddy, S.; Parma, D.; Gold, L. (1990). "Autogenous translational operator recognized by bacteriophage T4 DNA polymerase". Journal of Molecular Biology 213 (4): 749–761. doi:10.1016/S0022-2836(05)80261-X. PMID 2359122. 
  23. ↑ Anon (2007). "BioMed Central Blog: Sean Eddy wins open access award". Archived from the original on 2011-06-07. https://web.archive.org/web/20110607081718/http://blogs.openaccesscentral.com/blogs/bmcblog/entry/sean_eddy_wins_open_access. 




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