Biology:Anaerostipes

From HandWiki

Anaerostipes is a Gram positive and anaerobic bacterial genus from the family of Lachnospiraceae.[1][2][3] Anaerostipes occurs in the human gut.[4] Anaerostipes may protect against colon cancer in humans by producing butyric acid.[5]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[6]

16S rRNA based LTP_10_2024[7][8][9] 120 marker proteins based GTDB 09-RS220[10][11][12]
Anaerostipes

A. rhamnosivorans

A. caccae

A. hominis

A. butyraticus

A. faecalis

A. amylophilus

A. hadrus

Anaerostipes

A. rhamnosivorans Bui, de Vos &Plugge 2014

A. caccae Schwiertz et al. 2002

A. hominis Lee et al. 2021

A. faecalis Choi et al. 2022

A. amylophilus Hitch et al. 2022

A. hadrus (Moore, Johnson & Holdeman 1976) Allen-Vercoe et al. 2013

"Ca. A. excrementavium" Gilroy et al. 2021

"Ca. A. avistercoris" Gilroy et al. 2021

A. butyraticus Eeckhaut et al. 2010

References

  1. 1.0 1.1 A.C. Parte. "Anaerostipes". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/anaerostipes. 
  2. Anaerostipes. https://www.uniprot.org/taxonomy/207244. 
  3. "Anaerostipes" (in en). Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd. 1 January 2015. pp. 1–4. doi:10.1002/9781118960608.gbm00638. ISBN 9781118960608. 
  4. Andreas, Schwiertz (2016). Microbiota of the Human Body: Implications in Health and Disease. Springer. ISBN 978-3-319-31248-4. 
  5. Xia, Li C.; Liu, Gang; Gao, Yingxin; Li, Xiaoxin; Pan, Hongfei; Ai, Dongmei (2019). "Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model" (in English). Frontiers in Microbiology 10: 826. doi:10.3389/fmicb.2019.00826. ISSN 1664-302X. PMID 31068913. 
  6. Sayers. "Anaerostipes". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=207244&lvl=3&keep=1&srchmode=1&unlock. 
  7. "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  8. "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  9. "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  10. "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  11. "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  12. "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

Wikidata ☰ Q3614922 entry