Biology:Caldimicrobium

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Caldimicrobium is a genus of bacteria from the family Thermodesulfobacteriaceae.[1][2][3][4][5]

Caldimicrobium is an anaerobic thermophile which is roughly 1.0–1.2 micrometers long and 0.5 micrometers wide.[6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[7]

16S rRNA based LTP_10_2024[8][9][10] 120 marker proteins based GTDB 10-RS226[11][12][13]
Thermodesulfobacteriaceae
 

Thermosulfurimonas

 
 
 

Caldimicrobium rimae Miroshnichenko et al. 2009

 
 
 

Caldimicrobium thiodismutans Kojima, Umezawa & Fukui 2016

 
 

Thermodesulfobacterium

 
 
 
 
Thermodesulfobacteriaceae
 

Thermosulfurimonas

 
 
 

Caldimicrobium thiodismutans

 
 

Thermodesulfobacterium

 
 
 

References

  1. ↑ 1.0 1.1 Caldimicrobium in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research 53: D1–D12. doi:10.1093/nar/gkaf1110. 
  2. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named UniProt
  3. ↑ Anitori, Roberto Paul (2012) (in en). Extremophiles: Microbiology and Biotechnology. Horizon Scientific Press. ISBN 9781904455981. 
  4. ↑ Falkiewicz-Dulik, Michalina; Janda, Katarzyna; Wypych, George (2015) (in en). Handbook of Material Biodegradation, Biodeterioration, and Biostablization. Elsevier. ISBN 9781927885024. 
  5. ↑ Parker, Charles Thomas; Taylor, Dorothea; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M. eds. "Nomenclature Abstract for Caldimicrobium Miroshnichenko et al. 2009 emend. Kojima et al. 2016." (in en). The NamesforLife Abstracts. doi:10.1601/nm.14321. 
  6. ↑ Miroshnichenko, M. L.; Lebedinsky, A. V.; Chernyh, N. A.; Tourova, T. P.; Kolganova, T. V.; Spring, S.; Bonch-Osmolovskaya, E. A. (May 1, 2009). "Caldimicrobium rimae gen. nov., sp. nov., an extremely thermophilic, facultatively lithoautotrophic, anaerobic bacterium from the Uzon Caldera, Kamchatka". International Journal of Systematic and Evolutionary Microbiology 59 (5): 1040–1044. doi:10.1099/ijs.0.006072-0. PMID 19406789. 
  7. ↑ Schoch CL. "Caldimicrobium". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=tree&id=444090&lvl=3. Retrieved 2025-06-05. 
  8. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  9. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  10. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  11. ↑ "GTDB release 10-RS226". https://gtdb.ecogenomic.org/about#4%7C. 
  12. ↑ "bac120_r226.sp_label". https://data.gtdb.ecogenomic.org/releases/release226/226.0/auxillary_files/bac120_r226.sp_labels.tree. 
  13. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

  • Miroshnichenko, ML; Lebedinsky, AV; Chernyh, NA; Tourova, TP; Kolganova, TV; Spring, S; Bonch-Osmolovskaya, EA (May 2009). "Caldimicrobium rimae gen. nov., sp. nov., an extremely thermophilic, facultatively lithoautotrophic, anaerobic bacterium from the Uzon Caldera, Kamchatka.". International Journal of Systematic and Evolutionary Microbiology 59 (Pt 5): 1040–4. doi:10.1099/ijs.0.006072-0. PMID 19406789. 
  • Kojima, H; Umezawa, K; Fukui, M (April 2016). "Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium". International Journal of Systematic and Evolutionary Microbiology 66 (4): 1828–31. doi:10.1099/ijsem.0.000947. PMID 26842785. 

Wikidata ☰ Q26219533 entry



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