Biology:Colletotrichum
| Colletotrichum | |
|---|---|
| |
| C. lindemuthianum on bean pods | |
Scientific classification 
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| Domain: | Eukaryota |
| Kingdom: | Fungi |
| Division: | Ascomycota |
| Class: | Sordariomycetes |
| Order: | Glomerellales |
| Family: | Glomerellaceae |
| Genus: | Colletotrichum Corda, 1831 |
| Species complexes | |
|
See text | |
Colletotrichum (sexual stage: Glomerella) is a genus of fungi that are symbionts to plants as endophytes (living within the plant) or phytopathogens. Many of the species in this genus are plant pathogens, but some species may have a mutualistic relationship with hosts.[1]
History
The history of the Colletotrichum genus is a case study on the tension between the lumpers and splitters.[2] While the genus Colletotrichum was first proposed in 1831,[3] the exact definition of Colletotrichum and the species that belong in this genus has been in flux ever since.[4] The biggest recent shift has been from a definition (of both the genus and the species within it) based on morphology to a definition based on a combination of morphology and molecular phylogenetics.[5][4] The use of molecular phylogenetics has led to a huge increase in the number of recognized species in this genus, and the species are now organized into species complexes that usually have the name of their most widely known species. The name of a species when referring its namesake species complex will often have the suffix s.l. or sensu lato (in the broad sense) while that same name when referring to the specific species within the species complex will have the suffix of s.s. or sensu stricto (in the strict sense).
The most recent assessment of this genus identifies 248 species, most of which are categorized into 14 species complexes.[6] If history is any indicator of the future, then the list of species complexes and species within this genus will continue to be redefined and reorganized as more information becomes available.
Species and species complexes
Colletotrichum acutatum species complex [7]
- Colletotrichum abscissum
- Colletotrichum acerbum
- Colletotrichum acutatum sensu stricto
- Colletotrichum arboricola
- Colletotrichum australe
- Colletotrichum brisbanense
- Colletotrichum cairnsense
- Colletotrichum carthami
- Colletotrichum chrysanthemi
- Colletotrichum citri
- Colletotrichum cosmi
- Colletotrichum costaricense
- Colletotrichum cuscutae
- Colletotrichum eriobotryae
- Colletotrichum fioriniae
- Colletotrichum godetiae
- Colletotrichum guajavae
- Colletotrichum indonesiense
- Colletotrichum javanense
- Colletotrichum johnstonii
- Colletotrichum kinghornii
- Colletotrichum laticiphilum
- Colletotrichum lauri
- Colletotrichum limetticola
- Colletotrichum lupini
- Colletotrichum melonis
- Colletotrichum nymphaeae
- Colletotrichum paranaense
- Colletotrichum paxtonii
- Colletotrichum phormii
- Colletotrichum pyricola
- Colletotrichum rhombiforme
- Colletotrichum roseum
- Colletotrichum salicis
- Colletotrichum scovillei
- Colletotrichum simmondsii
- Colletotrichum sloanei
- Colletotrichum tamarilloi
- Colletotrichum walleri
- Colletotrichum wanningense
Colletotrichum agaves species complex [6]
Colletotrichum agaves sensu stricto
Colletotrichum euphorbiae
Colletotrichum ledebouriae
Colletotrichum neosansevieriae
Colletotrichum sansevieriae
Colletotrichum boninense species complex [8]
Colletotrichum annellatum
Colletotrichum beeveri
Colletotrichum boninense sensu stricto
Colletotrichum brasiliense
Colletotrichum brassicicola
Colletotrichum camelliae-japonicae
Colletotrichum catinaense
Colletotrichum citricola
Colletotrichum colombiense
Colletotrichum condaoense
Colletotrichum constrictum
Colletotrichum cymbidiicola
Colletotrichum dacrycarpi
Colletotrichum doitungense
Colletotrichum feijoicola
Colletotrichum hippeastri
Colletotrichum karstii
Colletotrichum limonicola
Colletotrichum novae-zelandiae
Colletotrichum oncidii
Colletotrichum parsonsiae
Colletotrichum petchii
Colletotrichum phyllanthi
Colletotrichum torulosum
Colletotrichum watphraense
Colletotrichum dematium species complex [9]
Colletotrichum anthrisci
Colletotrichum circinans
Colletotrichum dematium sensu stricto
Colletotrichum eryngiicola
Colletotrichum fructi
Colletotrichum hemerocallidis
Colletotrichum insertae
Colletotrichum jinshuiense
Colletotrichum kakivorum
Colletotrichum lineola
Colletotrichum menispermi
Colletotrichum orchidis
Colletotrichum parthenocissicola
Colletotrichum sambucicola
Colletotrichum sedi
Colletotrichum sonchicola
Colletotrichum spinaciae
Colletotrichum destructivum species complex [10]
Colletotrichum americae-borealis
Colletotrichum antirrhinicola
Colletotrichum atractylodicola
Colletotrichum bryoniicola
Colletotrichum destructivum sensu stricto
Colletotrichum fuscum
Colletotrichum lentis
Colletotrichum ocimi
Colletotrichum panacicola
Colletotrichum pisicola
Colletotrichum shisoi
Colletotrichum tabacum
Colletotrichum tanaceti
Colletotrichum utrechtense
Colletotrichum vignae
Colletotrichum dracaenophilum species complex [11]
Colletotrichum cariniferi
Colletotrichum coelogynes
Colletotrichum dracaenophilum sensu stricto
Colletotrichum excelsum-altitudinum
Colletotrichum parallelophorum
Colletotrichum tongrenense
Colletotrichum tropicicola
Colletotrichum yunnanense
Colletotrichum gigasporum species complex [12]
Colletotrichum arxii
Colletotrichum chiangraiense
Colletotrichum gigasporum sensu stricto
Colletotrichum jishouense
Colletotrichum magnisporum
Colletotrichum pseudomajus
Colletotrichum radicis
Colletotrichum serranegrense
Colletotrichum vietnamense
Colletotrichum gloeosporioides species complex [13]
Colletotrichum aenigma
Colletotrichum aeschynomenes
Colletotrichum alatae
Colletotrichum alienum
Colletotrichum aotearoa
Colletotrichum arecicola
Colletotrichum artocarpicola
Colletotrichum asianum
Colletotrichum camelliae
Colletotrichum changpingense
Colletotrichum chrysophillum
Colletotrichum cigarro
Colletotrichum clidemiae
Colletotrichum cobbittiense
Colletotrichum conoides
Colletotrichum cordylinicola
Colletotrichum endophytica
Colletotrichum fructicola
Colletotrichum fructivorum
Colletotrichum gloeosporioides sensu stricto
Colletotrichum grevilleae
Colletotrichum grossum
Colletotrichum hebeiense
Colletotrichum hederiicola
Colletotrichum helleniense
Colletotrichum henanense
Colletotrichum horii
Colletotrichum hystricis
Colletotrichum jiangxiense
Colletotrichum makassarense
Colletotrichum noveboracense
Colletotrichum nupharicola
Colletotrichum pandanicola
Colletotrichum perseae
Colletotrichum proteae
Colletotrichum pseudotheobromicola
Colletotrichum psidii
Colletotrichum queenslandicum
Colletotrichum rhexiae
Colletotrichum salsolae
Colletotrichum siamense
Colletotrichum syzygiicola
Colletotrichum tainanense
Colletotrichum temperatum
Colletotrichum theobromicola
Colletotrichum ti
Colletotrichum tropicale
Colletotrichum viniferum
Colletotrichum wuxiense
Colletotrichum xanthorrhoeae
Colletotrichum yulongense
Colletotrichum graminicola-caudatum species complex [6]
Colletotrichum alcornii
Colletotrichum baltimorense
Colletotrichum caudasporum
Colletotrichum caudatum sensu stricto
Colletotrichum duyunensis
Colletotrichum echinochloae
Colletotrichum eleusines
Colletotrichum endophytum
Colletotrichum eremochloae
Colletotrichum falcatum
Colletotrichum graminicola sensu stricto
Colletotrichum hainanense
Colletotrichum navitas
Colletotrichum ochracea
Colletotrichum zoysiae
Colletotrichum magnum species complex [11]
Colletotrichum brevisporum
Colletotrichum cacao
Colletotrichum liaoningense
Colletotrichum lobatum
Colletotrichum magnum sensu stricto
Colletotrichum merremiae
Colletotrichum okinawense
Colletotrichum panamense
Colletotrichum orbiculare species complex [6]
Colletotrichum bidentis
Colletotrichum malvarum
Colletotrichum orbiculare sensu stricto
Colletotrichum sidae
Colletotrichum spinosum
Colletotrichum tebeestii
Colletotrichum orchidearum species complex [11]
Colletotrichum aracearum
Colletotrichum cattleyicola
Colletotrichum cliviicola
Colletotrichum musicola
Colletotrichum orchidearum sensu stricto
Colletotrichum piperis
Colletotrichum plurivorum
Colletotrichum sojae
Colletotrichum vittalense
Colletotrichum spaethianum species complex [9]
Colletotrichum bletillum
Colletotrichum guizhouensis
Colletotrichum incanum
Colletotrichum lilii
Colletotrichum liriopes
Colletotrichum riograndense
Colletotrichum spaethianum sensu stricto
Colletotrichum tofieldiae
Colletotrichum verruculosum
Colletotrichum truncatum species complex [9]
Colletotrichum acidae
Colletotrichum curcumae
Colletotrichum fusiforme
Colletotrichum jasminigenum
Colletotrichum truncatum sensu stricto
Singleton species [6]
Colletotrichum chlorophyti
Colletotrichum hsienjenchang
Colletotrichum metake
Colletotrichum phaseolorum
Colletotrichum pyrifoliae
Colletotrichum rusci
Colletotrichum sydowii
Species names that are no longer valid or have been synonymized
- Colletotrichum arachidis
- Colletotrichum capsici
- Colletotrichum coffeanum
- Colletotrichum crassipes
- Colletotrichum derridis
- Colletotrichum gossypii
- Colletotrichum mangenotii
- Colletotrichum sublineolum
References
- ↑ Rodriguez, R.; Redman, R. (2008). "More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis". Journal of Experimental Botany 59 (5): 1109–1114. doi:10.1093/jxb/erm342. PMID 18267941.
- ↑ Hyde, Kevin David, Lei Cai, E. H. C. McKenzie, Y. L. Yang, J. Z. Zhang, and H. Prihastuti (2009). "Colletotrichum : a catalogue of confusion". Fungal Diversity 39. http://www.fungaldiversity.org/fdp/sfdp/FD39-1-E.pdf.
- ↑ August Carl Joseph, Corda (1831). Sturm, Jakob. ed (in German). Deutschlands Flora in Abbildungen nach der Natur mit Beschreibungen. 3. Nürnberg, Germany. pp. 33–64.
- ↑ 4.0 4.1 Cannon, P.F.; Damm, U.; Johnston, P.R.; Weir, B.S. (2012). "Colletotrichum – current status and future directions" (in en). Studies in Mycology 73 (1): 181–213. doi:10.3114/sim0014. PMID 23136460.
- ↑ Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu, Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. and Johnston, P.R. (2009). "A polyphasic approach for studying Colletotrichum". Fungal Diversity 39: 183–204. https://www.fungaldiversity.org/fdp/sfdp/FD39-8.pdf.
- ↑ 6.0 6.1 6.2 6.3 6.4 Bhunjun, Chitrabhanu S.; Phukhamsakda, Chayanard; Jayawardena, Ruvishika S.; Jeewon, Rajesh; Promputtha, Itthayakorn; Hyde, Kevin D. (2021). "Investigating species boundaries in Colletotrichum" (in en). Fungal Diversity 107 (1): 107–127. doi:10.1007/s13225-021-00471-z. ISSN 1878-9129. https://doi.org/10.1007/s13225-021-00471-z.
- ↑ Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Crous, P.W. (2012). "The Colletotrichum acutatum species complex" (in en). Studies in Mycology 73 (1): 37–113. doi:10.3114/sim0010. PMID 23136458.
- ↑ Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Johnston, P.R.; Weir, B.S.; Tan, Y.P.; Shivas, R.G.; Crous, P.W. (2012). "The Colletotrichum boninense species complex" (in en). Studies in Mycology 73 (1): 1–36. doi:10.3114/sim0002. PMID 23136457.
- ↑ 9.0 9.1 9.2 Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, and Yan JY (2016). "Notes on currently accepted species of Colletotrichum". Mycosphere 7 (8): 1192–1260. doi:10.5943/mycosphere/si/2c/9. http://www.mycosphere.org/pdf/Mycosphere_SI_2c_9.pdf.
- ↑ Damm, U.; O'Connell, R. J.; Groenewald, J. Z.; Crous, P. W. (2014). "The Colletotrichum destructivum species complex – hemibiotrophic pathogens of forage and field crops" (in en). Studies in Mycology 79: 49–84. doi:10.1016/j.simyco.2014.09.003. ISSN 0166-0616. PMID 25492986.
- ↑ 11.0 11.1 11.2 Damm, U.; Sato, T.; Alizadeh, A.; Groenewald, J.Z.; Crous, P.W. (2018). "The Colletotrichum dracaenophilum, C. magnum and C. orchidearum species complexes". Studies in Mycology 90 (1): 71–118. doi:10.1016/j.simyco.2017.11.002. ISSN 0166-0616. PMID 29276320.
- ↑ Liu, F.; Cai, L.; Crous, P.W.; Damm, U. (2014). "The Colletotrichum gigasporum species complex". Persoonia - Molecular Phylogeny and Evolution of Fungi 33 (1): 83–97. doi:10.3767/003158514X684447. PMID 25737595. PMC 4312939. https://www.ingentaconnect.com/content/nhn/pimj/2014/00000033/00000001/art00005;jsessionid=7rl06e808a11l.x-ic-live-02.
- ↑ Weir, B.S.; Johnston, P.R.; Damm, U. (2012). "The Colletotrichum gloeosporioides species complex" (in en). Studies in Mycology 73 (1): 115–180. doi:10.3114/sim0011. PMID 23136459.
Further reading
- Cai, L. (2009). "A polyphasic approach for studying Colletotrichum". Fungal Diversity 39: 183–204. http://www.fungaldiversity.org/fdp/sfdp/FD39-8.pdf.
- Damm, U.; Cannon, P. F.; Woudenberg, J. H. C.; Johnston, P. R.; Weir, B. S.; Tan, Y. P.; Shivas, R. G.; Crous, P. W. (September 2012). "The Colletotrichum boninense species complex". Studies in Mycology 73 (1): 1–36. doi:10.3114/sim0002. PMID 23136457.
- Damm, U.; Baroncelli, R.; Cai, L.; Kubo, Y.; O'Connell, R.; Weir, B.; Yoshino, K.; Cannon, P. F. (2010). "Colletotrichum: species, ecology and interactions". IMA Fungus 1 (2): 161–165. doi:10.5598/imafungus.2010.01.02.08. PMID 22679575.
- Hyde, K. D. et al. 2009. Colletotrichum - names in current use. Fungal Diversity 39 147–83.
- Weir, B. S.; Johnston, P. R. (2010). "Characterisation and neotypification of Gloeosporium kaki Hori as Colletotrichum horii nom. nov.". Mycotaxon 111 (1): 209–219. doi:10.5248/111.209.
- Vieira, W. A. S.; Lima, W. G.; Nascimento, E. S.; Michereff, S. J.; Câmara, M. P. S.; Doyle, V. P. (2018). "The impact of phenotypic and molecular data on the inference of Colletotrichum diversity associated with Musa". Mycologia 109 (6): 912–934. doi:10.1080/00275514.2017.1418577. PMID 29494311.
- Liu, F.; Tang, G.; Zheng, X.; Li, Y.; Sun, X.; Qi, X.; Zhou, Y.; Xu, J. et al. (2016). "Molecular and phenotypic characterization of Colletotrichum species associated with anthracnose disease in peppers from Sichuan Province, China". Scientific Reports 6 (1): 32761. doi:10.1038/srep32761. PMID 27609555. Bibcode: 2016NatSR...632761L.
Wikidata ☰ Q10457032 entry
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