Biology:Nanohaloarchaea

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Short description: Class of archaea

Nanohaloarchaea
Scientific classification
Domain:
Archaea
Superphylum:
DPANN
Phylum:
"Nanohaloarchaeota"
Class:
"Nanohaloarchaea"

(sic) Narasingarao et al. 2012
Order:
"Nanohalarchaeales"
Family:
"Nanohalarchaeaceae"
Genus
  • "Candidatus Nanohalarchaeum" corrig. Hamm et al. 2019
Synonyms
  • "Nanohalarchaeia" corrig. Narasingarao et al. 2012

Nanohaloarchaea is a clade of diminutive archaea with small genomes and limited metabolic capabilities, belonging to the DPANN archaea. They are ubiquitous in hypersaline habitats, which they share with the extremely halophilic haloarchaea.

Nanohaloarchaea were first identified from metagenomic data as a class of uncultivated halophilic archaea composed of 6 clades[1][2] and were subsequently placed in the phylum Nanohaloarchaeota within the Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota, Nanohaloarchaeota (DPANN) superphylum.[3] However the phylogenetic position of nanohaloarchaea is still highly debated, being alternatively proposed as the sister-lineage of haloarchaea or a member of the DPANN super-phylum.[4][5][6]

The lineage has since been identified in data from a range of hypersaline environments including: Australian thalassohaline lake,[7] Spanish saltern,[8] Russian soda brine,[9] Californian saltern,[10] and Chilean halite[11]

Taxonomy

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[12] and National Center for Biotechnology Information (NCBI).[13]

Phylogeny of Nanohalobiaceae[14][15][16]
 
 

"Candidatus Nanosalinicola"

 
 
 

"Candidatus Nanosalina"

 
 

"Candidatus Nanohalobium"

 
 
 

Phylum "Nanohaloarchaeota" corrig. Rinke et al. 2013

  • Class "Nanohaloarchaeia" corrig. Narasingarao et al. 2012
    • Order "Nanohaloarchaeales"
      • Family "Nanohaloarchaeaceae"
        • Genus ?"Candidatus Nanohaloarchaeum" corrig. Hamm et al. 2019
          • "Ca. N. antarcticum" corrig. Hamm et al. 2019
        • Genus ?"Candidatus Nanopetraeus" corrig. Crits‐Christoph et al. 2016 ["Nanopetramus" (sic)]
  • Class "Nanohalobiia" corrig. La Cono et al. 2020
    • Order "Nanohalobiales" La Cono et al. 2020[17] ["Nanosalinales" Rinke et al. 2020]
      • Family "Nanoanaerosalinaceae" Zhao et al. 2022
        • Genus ?"Candidatus Nanoanaerosalina" Zhao et al. 2022
          • "Ca. N. halalkaliphila" Zhao et al. 2022
      • Family "Nanohalalkaliarchaeaceae" Zhao et al. 2022
        • Genus ?"Candidatus Nanohalalkaliarchaeum" Zhao et al. 2022
          • "Ca. N. halalkaliphilum" Zhao et al. 2022
      • Family "Nanohalobiaceae" La Cono et al. 2020 ["Nanosalinaceae" Rinke et al. 2020]
        • Genus ?"Candidatus Haloredivivus" Ghai et al. 2011
        • Genus "Candidatus Nanohalobium" La Cono et al. 2020
          • "Ca. N. constans" La Cono et al. 2020
        • Genus "Candidatus Nanosalina" Narasingarao et al. 2012
        • Genus "Candidatus Nanosalinicola" corrig. Narasingarao et al. 2012 ["Nanosalinarum" (sic)]

References

  1. ↑ Narasingarao (2011). "De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities". ISME J. 6 (1): 81–93. doi:10.1038/ismej.2011.78. PMID 21716304. 
  2. ↑ Ghai, Rohit; Lejla Pašić; Ana Beatriz Fernandez; Ana-Belen Martin-Cuadrado et al. (10 October 2011). "New Abundant Microbial Groups in Aquatic Hypersaline Environments". Scientific Reports 1: 135. doi:10.1038/srep00135. PMID 22355652. Bibcode: 2011NatSR...1E.135G. 
  3. ↑ Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T (July 25, 2013). "Insights into the phylogeny and coding potential of microbial dark matter". Nature 499, 431–437 (2013) (7459): 431–437. doi:10.1038/nature12352. PMID 23851394. Bibcode: 2013Natur.499..431R. 
  4. ↑ Petitjean, C.; Deschamps, P.; López-García, P.; Moreira, D. (2014). "Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota". Genome Biol. Evol. 7 (1): 191–204. doi:10.1093/gbe/evu274. PMID 25527841. 
  5. ↑ Cavalier-Smith, Thomas; Chao, Ema E-Yung (2020). "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (Eukaryotes, archaebacteria)". Protoplasma 257 (3): 621–753. doi:10.1007/s00709-019-01442-7. PMID 31900730. 
  6. ↑ Monique Aouad, Najwa Taïb, Anne Oudart, Michel Lecocq, Manolo Gouy,Céline Brochier-Armanet (21 Apr 2018). "Extreme halophilic archaea derive from two distinct methanogen Class II lineages". Molecular Phylogenetics and Evolution (Elsevier) 2018 (27): 46–54. doi:10.1016/j.ympev.2018.04.011. PMID 29684598. https://hal.archives-ouvertes.fr/hal-01799910/file/aouad2018.pdf. 
  7. ↑ Karen Andrade, Jörn Logemann, Karla B Heidelberg, Joanne B Emerson, Luis R Comolli, Laura A Hug, Alexander J Probst, Angus Keillar, Brian C Thomas, Christopher S Miller, Eric E Allen, John W Moreau, Jochen J Brocks & Jillian F Banfield (28 April 2015). "Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem". ISME J ISME J 9, 2697–2711 (2015) (12): 2697–2711. doi:10.1038/ismej.2015.66. PMID 25918833. 
  8. ↑ Rohit Ghai, Lejla Pašić, Ana Beatriz Fernández, Ana-Belen Martin-Cuadrado, Carolina Megumi Mizuno, Katherine D. McMahon, R. Thane Papke, Ramunas Stepanauskas, Beltran Rodriguez-Brito, Forest Rohwer, Cristina Sánchez-Porro, Antonio Ventosa & Francisco Rodríguez-Valera (31 October 2011). "New Abundant Microbial Groups in Aquatic Hypersaline Environments". Scientific Reports 1 (Sci Rep 1, 135 (2011)): 135. doi:10.1038/srep00135. PMID 22355652. Bibcode: 2011NatSR...1E.135G. 
  9. ↑ Vavourakis Charlotte D., Ghai Rohit, Rodriguez-Valera Francisco, Sorokin Dimitry Y., Tringe Susannah G., Hugenholtz Philip, Muyzer Gerard (25 February 2016). "Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines". Frontiers in Microbiology 7: 211. doi:10.3389/fmicb.2016.00211. PMID 26941731. 
  10. ↑ Olga Zhaxybayeva 1 , Ramunas Stepanauskas, Nikhil Ram Mohan, R Thane Papke (29 January 2013). "Cell sorting analysis of geographically separated hypersaline environments". Extremophiles 17,2 (2013) (2): 265–275. doi:10.1007/s00792-013-0514-z. PMID 23358730. https://www.researchgate.net/publication/235380187. Retrieved 2 March 2021. 
  11. ↑ Alexander Crits‐Christoph Diego R. Gelsinger Bing Ma Jacek Wierzchos Jacques Ravel Alfonso Davila M. Cristina Casero Jocelyne DiRuggiero (21 March 2016). "Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community". Environmental Microbiology 18 (2016 v.18 no.6): 2064–2077. doi:10.1111/1462-2920.13259. PMID 26914534. https://doi.org/10.1111/1462-2920.13259. Retrieved 2 March 2021. 
  12. ↑ J.P. Euzéby. "Phylum "Candidatus Nanohaloarchaeota"". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/phylum/nanohaloarchaeota. 
  13. ↑ Sayers. "Nanohaloarchaea". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=1051663&lvl=3&lin. 
  14. ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C. 
  15. ↑ "ar53_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree. 
  16. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 
  17. ↑ La Cono (2020). "Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides". Proc Natl Acad Sci USA 117 (33): 20223–20234. doi:10.1073/pnas.2007232117. PMID 32759215. Bibcode: 2020PNAS..11720223L. 

Further reading

Wikidata ☰ Q6964054 entry




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