Biology:Uberon

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Short description: Representation of anatomical structures
Uberon
Database.png
Content
DescriptionUberon, an integrative multi-species anatomy ontology.
Data types
captured
Anatomical Structures
OrganismsMetazoa
Contact
Primary citationMungall & al. (2012)[1]
Release date2012
Access
Data formatOWL and OBO
Websitehttp://obophenotype.github.io/uberon/
Download URLhttp://purl.obolibrary.org/obo/uberon/merged.owl
Sparql endpointhttp://sparql.hegroup.org/sparql
Miscellaneous
Software licenseopen

The Uber-anatomy ontology (Uberon) is a comparative anatomy ontology representing a variety of structures found in animals, such as lungs, muscles, bones, feathers and fins. These structures are connected to other structures via relationships such as part-of and develops-from.[1] One of the uses of this ontology is to integrate data from different biological databases, and other species-specific ontologies such as the Foundational Model of Anatomy.[2][3][4]

References

  1. 1.0 1.1 Mungall, Christopher J; Torniai Carlo; Gkoutos Georgios V; Lewis Suzanna E; Haendel Melissa A (2012). "Uberon, an integrative multi-species anatomy ontology". Genome Biol. (England) 13 (1): R5. doi:10.1186/gb-2012-13-1-r5. PMID 22293552. 
  2. Washington, N. L. (2009). Buetow, Kenneth H. ed. "Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation". PLOS Biology 7 (11): e1000247. doi:10.1371/journal.pbio.1000247. PMID 19956802. 
  3. Hoehndorf, R.; Schofield, P. N.; Gkoutos, G. V. (2011). "PhenomeNET: A whole-phenome approach to disease gene discovery". Nucleic Acids Research 39 (18): e119. doi:10.1093/nar/gkr538. PMID 21737429. 
  4. Chen, C. K.; Mungall, C. J.; Gkoutos, G. V.; Doelken, S. C.; Köhler, S.; Ruef, B. J.; Smith, C.; Westerfield, M. et al. (2012). "MouseFinder: Candidate disease genes from mouse phenotype data". Human Mutation 33 (5): 858–866. doi:10.1002/humu.22051. PMID 22331800. 

External links