Column-oriented DBMS

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Short description: Database management system storing data tables by columns

A column-oriented DBMS or columnar DBMS is a database management system (DBMS) that stores data tables by column rather than by row. Benefits include more efficient access to data when only querying a subset of columns (by eliminating the need to read columns that are not relevant), and more options for data compression. However, they are typically less efficient for inserting new data.

Practical use of a column store versus a row store differs little in the relational DBMS world. Both columnar and row databases can use traditional database query languages like SQL to load data and perform queries. Both row and columnar databases can become the backbone in a system to serve data for common extract, transform, load (ETL) and tools.

Description

Background

A relational database management system provides data that represents a two-dimensional table of columns and rows. For example, a database might have this table:

RowId EmpId Lastname Firstname Salary
001 10 Smith Joe 60000
002 12 Jones Mary 80000
003 11 Johnson Cathy 94000
004 22 Jones Bob 55000

This simple table includes an employee identifier (EmpId), name fields (Lastname and Firstname) and a salary (Salary). This two-dimensional format is an abstraction. In an actual implementation, storage hardware requires the data to be serialized into one form or another.

The most expensive operations involving hard disks are seeks. In order to improve overall performance, related data should be stored in a fashion to minimize the number of seeks. This is known as locality of reference, and the basic concept appears in a number of different contexts. Hard disks are organized into a series of blocks of a fixed size, typically enough to store several rows of the table. By organizing the table's data so rows fit within these blocks, and grouping related rows onto sequential blocks, the number of blocks that need to be read or sought is minimized in many cases, along with the number of seeks.

A survey by Pinnecke et al.[1] covers techniques for column-/row hybridization as of 2017.

Row-oriented systems

A common method of storing a table is to serialize each row of data, like this: 

001:10,Smith,Joe,60000;
002:12,Jones,Mary,80000;
003:11,Johnson,Cathy,94000;
004:22,Jones,Bob,55000;

As data is inserted into the table, it is assigned an internal ID, the rowid that is used internally in the system to refer to data. In this case the records have sequential rowids independent of the user-assigned empid. In this example, the DBMS uses short integers to store rowids. In practice, larger numbers, 64-bit or 128-bit, are normally used.

Row-oriented systems are designed to efficiently return data for an entire row, or record, in as few operations as possible. This matches the common use-case where the system is attempting to retrieve information about a particular object, say the contact information for a user in a rolodex system, or product information for an online shopping system. By storing the record's data in a single block on the disk, along with related records, the system can quickly retrieve records with a minimum of disk operations.

Row-oriented systems are not efficient at performing set-wide operations on the whole table, as opposed to a small number of specific records. For instance, in order to find all records in the example table with salaries between 40,000 and 50,000, the DBMS would have to fully scan through the entire table looking for matching records. While the example table shown above will likely fit in a single disk block, a table with even a few hundred rows would not, and multiple disk operations would be needed to retrieve the data and examine it.

To improve the performance of these sorts of operations (which are very common, and generally the point of using a DBMS), most DBMSs support the use of database indexes, which store all the values from a set of columns along with rowid pointers back into the original table. An index on the salary column would look something like this: 

55000:004; 
60000:001;
80000:002;
94000:003;

As they store only single pieces of data, rather than entire rows, indexes are generally much smaller than the main table stores. Scanning this smaller set of data reduces the number of disk operations. If the index is heavily used, it can dramatically reduce the time for common operations. However, maintaining indexes adds overhead to the system, especially when new data is written to the database. Records not only need to be stored in the main table, but any attached indexes have to be updated as well.

The main reason why indexes dramatically improve performance on large datasets is that database indexes on one or more columns are typically sorted by value, which makes range queries operations (like the above "find all records with salaries between 40,000 and 50,000" example) very fast (lower time-complexity).

A number of row-oriented databases are designed to fit entirely in RAM, an in-memory database. These systems do not depend on disk operations, and have equal-time access to the entire dataset. This reduces the need for indexes, as it requires the same amount of operations to fully scan the original data as a complete index for typical aggregation purposes. Such systems may be therefore simpler and smaller, but can only manage databases that will fit in memory.

Column-oriented systems

A column-oriented database serializes all of the values of a column together, then the values of the next column, and so on. For our example table, the data would be stored in this fashion: 

10:001,12:002,11:003,22:004;
Smith:001,Jones:002,Johnson:003,Jones:004;
Joe:001,Mary:002,Cathy:003,Bob:004;
60000:001,80000:002,94000:003,55000:004;

In this layout, any one of the columns more closely matches the structure of an index in a row-oriented system. This may cause confusion that can lead to the mistaken belief a column-oriented store "is really just" a row-store with an index on every column. However, it is the mapping of the data that differs dramatically. In a row-oriented system, indices map column values to rowids, whereas in a column-oriented system, columns map rowids to column values.[2] This may seem subtle, but the difference can be seen in this common modification to the same store wherein the two "Jones" items, above, are compressed into a single item with two rowids: 

…;Smith:001;Jones:002,004;Johnson:003;…

Whether or not a column-oriented system will be more efficient in operation depends heavily on the workload being automated. Operations that retrieve all the data for a given object (the entire row) are slower. A row-oriented system can retrieve the row in a single disk read, whereas numerous disk operations to collect data from multiple columns are required from a columnar database. However, these whole-row operations are generally rare. In the majority of cases, only a limited subset of data is retrieved. In a rolodex application, for instance, collecting the first and last names from many rows to build a list of contacts is far more common than reading all data for any single address. This is even more true for writing data into the database, especially if the data tends to be "sparse" with many optional columns. For this reason, column stores have demonstrated excellent real-world performance in spite of many theoretical disadvantages.[3]

Partitioning, indexing, caching, views, OLAP cubes, and transactional systems such as write-ahead logging or multiversion concurrency control all dramatically affect the physical organization of either system. That said, online transaction processing (OLTP)-focused RDBMS systems are more row-oriented, while online analytical processing (OLAP)-focused systems are a balance of row-oriented and column-oriented.

Benefits

Access time

Comparisons between row-oriented and column-oriented databases are typically concerned with the efficiency of hard-disk access for a given workload, as seek time is incredibly long compared to the other bottlenecks in computers. For example, a typical Serial ATA (SATA) hard drive has an average seek time of between 16 and 22 milliseconds [4] while DRAM access on an Intel Core i7 processor takes on average 60 nanoseconds, nearly 400,000 times as fast.[5] Clearly, disk access is a major bottleneck in handling big data. Columnar databases boost performance by reducing the amount of data that needs to be read from disk, both by efficiently compressing the similar columnar data and by reading only the data necessary to answer the query.

In practice, columnar databases are well-suited for OLAP-like workloads (e.g., data warehouses) which typically involve highly complex queries over all data (possibly petabytes). However, some work must be done to write data into a columnar database. Transactions (INSERTs) must be separated into columns and compressed as they are stored, making it less suited for OLTP workloads. Row-oriented databases are well-suited for OLTP-like workloads which are more heavily loaded with interactive transactions. For example, retrieving all data from a single row is more efficient when that data is located in a single location (minimizing disk seeks), as in row-oriented architectures. However, column-oriented systems have been developed as hybrids capable of both OLTP and OLAP operations. Some of the OLTP constraints, faced by such column-oriented systems, are mediated using (amongst other qualities) in-memory data storage.[6] Column-oriented systems suitable for both OLAP and OLTP roles effectively reduce the total data footprint by removing the need for separate systems.[7]

Compression

Column data is of uniform type; therefore, there are some opportunities for storage size optimizations available in column-oriented data that are not available in row-oriented data. For example, many popular modern compression schemes, such as LZW or run-length encoding, make use of the similarity of adjacent data to compress. Missing values and repeated values, common in clinical data, can be represented by a two-bit marker.[8] While the same techniques may be used on row-oriented data, a typical implementation will achieve less effective results.[9][10]

To improve compression, sorting rows can also help. For example, using bitmap indexes, sorting can improve compression by an order of magnitude.[11] To maximize the compression benefits of the lexicographical order with respect to run-length encoding, it is best to use low-cardinality columns as the first sort keys.[12] For example, given a table with columns sex, age, name, it would be best to sort first on the value sex (cardinality of two), then age (cardinality of <128), then name.

Columnar compression achieves a reduction in disk space at the expense of efficiency of retrieval. The greater adjacent compression achieved, the more difficult random-access may become, as data might need to be uncompressed to be read. Therefore, column-oriented architectures are sometimes enriched by additional mechanisms aimed at minimizing the need for access to compressed data.[13]

History

Column stores or transposed files have been implemented from the early days of DBMS development. TAXIR was the first application of a column-oriented database storage system with focus on information-retrieval in biology[14] in 1969. Clinical data from patient records with many more attributes than could be analyzed were processed in 1975 and after by a time-oriented database system (TODS).[8] Statistics Canada implemented the RAPID system[15] in 1976 and used it for processing and retrieval of the Canadian Census of Population and Housing as well as several other statistical applications. RAPID was shared with other statistical organizations throughout the world and used widely in the 1980s. It continued to be used by Statistics Canada until the 1990s.

Another column-oriented database was SCSS.[16][17][18]

Later column-oriented database packages included:

  • 1993: KDB
  • 1995: Sybase IQ

Since about 2004 there have been additional open source and commercial implementations. MonetDB was released under an open-source license on September 30, 2004,[19] followed closely by the now defunct C-Store.[20]

C-store was a university project that eventually, with team member Michael Stonebraker staying on, led to Vertica, which he co-founded in 2005.[21][22]

The MonetDB-related X100 project evolved into VectorWise.[23][24] Druid is a column-oriented data store that was open-sourced in late 2012 and is now used by numerous organizations.[25]

Classic Relational DBMS can use column-oriented strategies by mixing row-oriented and column-oriented tables. Despite the DBMS complexity, this approach has proven to be valuable from the years 2010 to present. For example in 2014 Citusdata introduced column-oriented tables for PostgreSQL[26] and McObject added support for columnar storage with its release of eXtremeDB Financial Edition in 2012[27] which was then used to establish a new standard of performance for the independently audited STAC-M3 benchmark.[28]

See also

References

  1. ↑ Marcus Pinnecke; David Broneske; Gabriel Campero Durand; Gunter Saake (2017). "Are Databases Fit for Hybrid Workloads on GPUs? A Storage Engine's Perspective". IEEE 33rd International Conference on Data Engineering (ICDE). doi:10.1109/ICDE.2017.237. http://wwwiti.cs.uni-magdeburg.de/iti_db/publikationen/ps/auto/Pinnecke+BCS17.pdf. 
  2. ↑ "Debunking Another Myth: Column-Stores vs. Vertical Partitioning". The Database Column. 31 July 2008. http://www.databasecolumn.com/2008/07/debunking-another-myth-columns.html. 
  3. ↑ "Column-Oriented Database Systems". VLDB 2009 Tutorial. p. 5. http://www.cs.yale.edu/homes/dna/talks/Column_Store_Tutorial_VLDB09.pdf. 
  4. ↑ Masiero, Manuel (January 8, 2013). "Western Digital's 4 TB WD4001FAEX Review: Back In Black". http://www.tomshardware.com/reviews/wd4001faex-4tb-review,3368-4.html. 
  5. ↑ Levinthal, David (2009). "Performance Analysis Guide for Intel® Core™ i7 Processor and Intel® Xeon™ 5500 processors". Intel. p. 22. https://software.intel.com/sites/products/collateral/hpc/vtune/performance_analysis_guide.pdf. 
  6. ↑ "Compacting Transactional Data in Hybrid OLTP&OLAP Databases". http://vldb.org/pvldb/vol5/p1424_florianfunke_vldb2012.pdf. 
  7. ↑ "A Common Database Approach for OLTP and OLAP Using an In-Memory Column Database". http://www.sigmod09.org/images/sigmod1ktp-plattner.pdf. 
  8. ↑ 8.0 8.1 Stephen Weyl; James F. Fries; Gio Wiederhold; Frank Germano (1975). "A Modular Self-describing Clinical Database System". Computers and Biomedical Research 8 (3): 279–293. doi:10.1016/0010-4809(75)90045-2. PMID 1157469. 
  9. ↑ D. J. Abadi; S. R. Madden; N. Hachem (2008). Column-stores vs. row-stores: how different are they really?. pp. 967–980. 
  10. ↑ Bruno, N (2009). "Teaching an old elephant new tricks". arXiv:0909.1758 [cs.DB].
  11. ↑ Daniel Lemire, Owen Kaser, Kamel Aouiche, "Sorting improves word-aligned bitmap indexes", Data & Knowledge Engineering, Volume 69, Issue 1 (2010), pp. 3-28.
  12. ↑ Daniel Lemire and Owen Kaser, Reordering Columns for Smaller Indexes, Information Sciences 181 (12), 2011
  13. ↑ Dominik Ślęzak; Jakub Wróblewski; Victoria Eastwood; Piotr Synak (2008). "Brighthouse: an analytic data warehouse for ad hoc queries". Proceedings of the 34th VLDB Conference. Auckland, New Zealand. http://www.vldb.org/pvldb/1/1454174.pdf. Retrieved 2009-05-04. 
  14. ↑ George F. Estabrook; Robert C. Brill (November 1969). "The theory of the TAXIR accessioner". Mathematical Biosciences 5 (3–4): 327–340. doi:10.1016/0025-5564(69)90050-9. 
  15. ↑ "A DBMS for large statistical databases". acm.org. 1979. pp. 319–327. http://portal.acm.org/citation.cfm?id=1286746. 
  16. ↑ already on the market by September 1977
  17. ↑ Nie, Norman H. (1980). SCSS: A User's Guide to the SPSS Conversational Statistical System. McGraw-Hill. ISBN 978-0070465336. 
  18. ↑ "SCSS from SPSS, Inc". ComputerWorld: p. 28. September 26, 1977. https://books.google.com/books?id=uz8cDDHy64IC. 
  19. ↑ "A short history about us". monetdb.org. https://www.monetdb.org/AboutUs. 
  20. ↑ "C-Store". mit.edu. http://db.lcs.mit.edu/projects/cstore/. 
  21. ↑ "The Vertica Analytic Database: C-Store 7 Years Later" (PDF)". August 28, 2012. http://vldb.org/pvldb/vol5/p1790_andrewlamb_vldb2012.pdf. 
  22. ↑ Charles Babcock (February 21, 2008). "Database Pioneer Rethinks The Best Way To Organize Data". InformationWeek. https://www.informationweek.com/database-pioneer-rethinks-the-best-way-to-organize-data/d/d-id/1064893. Retrieved 2018-12-08. 
  23. ↑ Marcin Zukowski; Peter Boncz (May 20, 2012). "From x100 to vectorwise". Proceedings of the 2012 ACM SIGMOD International Conference on Management of Data. ACM. pp. 861–862. doi:10.1145/2213836.2213967. ISBN 978-1-4503-1247-9. 
  24. ↑ D. Inkster; M. Zukowski; P.A. Boncz (September 20, 2011). "Integration of VectorWise with Ingres". ACM SIGMOD Record 40 (3): 45. doi:10.1145/2070736.2070747. 
  25. ↑ "Druid". druid.io. http://druid.io/druid-powered.html. 
  26. ↑ "Citusdata". https://github.com/citusdata/citus. 
  27. ↑ Saujani, Sandeep (19 June 2012). "McObject eXtremeDB Financial Edition In-Memory DBMS Breaks Through Capital Markets' Data Management Bottleneck". https://www.bobsguide.com/guide/news/2012/Jun/19/mcobject-extremedb-financial-edition-in-memory-dbms-breaks-through-capital-markets-data-management-bottleneck/. 
  28. ↑ STAC Benchmark Council, Leadership (3 November 2012). "McObject eXtremeDB 5.0 Financial Edition with Kove XPD L2 Storage System, Dell PowerEdge R910 Server and Mellanox ConnectX-2 and MIS5025Q QDR InfiniBand Switch". https://www.stacresearch.com/mcobject. 

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