Software:Yass
From HandWiki
| Stable release | 1.14
|
|---|---|
| Operating system | Linux, Mac, MS-Windows |
| Type | Bioinformatics tool |
| Licence | GPLv2 CeCILL |
| Website | https://bioinfo.cristal.univ-lille.fr/yass/ |
YASS (Yet Another Similarity Searcher)[1][2] is a free software,[3] pairwise sequence alignment software for nucleotide sequences, that is, it can search for similarities between DNA or RNA sequences. YASS accepts nucleotide sequences in either plain text or the FASTA format and the output format includes the BLAST tabular output. YASS uses several transition-constrained spaced seed k-mers, which allow considerably improved sensitivity. YASS can be used locally on a user's machine, or as SaaS on the YASS web server, which produces a browser based dot-plot.
See also
- Sequence alignment software
- PatternHunter
- BLAST
- FASTA
- JAligner
References
- ↑ Noe L., Kucherov. G. (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research 33 (2): W540–W543. doi:10.1093/nar/gki478. PMID 15980530.
- ↑ Noe L., Kucherov. G. (2004). "Improved hit criteria for DNA local alignment". BMC Bioinformatics 5: 149. doi:10.1186/1471-2105-5-149. PMID 15485572.
- ↑ "README". https://bioinfo.cristal.univ-lille.fr/yass/files/yass-current/README.
External links
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