SaTScan

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Short description: A free software for spatial, temporal, and space-time scan statistics

SaTScan is a software tool that employs scan statistics for the spatial and temporal analysis of clusters of events.[1][2][3][4] The software is trademarked by Martin Kulldorff, and was designed originally for public health and epidemiology to identify clusters of cases in both space (geographical location) and time and to perform statistical analysis to determine if these clusters are significantly different from what would be expected by chance[1][5][6] The software provides a user-friendly interface and a range of statistical methods, making it accessible to researchers and practitioners.[1][7] While not a full Geographic Information System, the outputs from SaTScan can be integrated with software such as ArcGIS or QGIS to visualize and analyze spatial data, and to map the distribution of various phenomena.

Analysis

SaTScan employs scan statistics to identify clusters of space and time phenomena.[1] Scan statistics use regular shapes (usually circles) of varying sizes to evaluate a study area.[8][9] Within each circle, the software computes if the phenomena within the circle is significantly different than expected compared to the area outside the circle.[8][9]

SaTScan can analyze data retrospectively or prospectively. It can look at the data spatially, temporally, or simultaneously incorporate both space and time.[1] SaTScan can incorporate numerous probability models, including Poisson distribution, Bernoulli distribution, Monte Carlo method, and multinomial distribution.[1][2][9] Using these, it can look for areas of higher and lower occurrences of phenomena than expected.[1]

Results are output into a variety of formats, including ESRI Shapefile, HTML, and KML.[1]

History

SaTScan was developed by a group of epidemiologists and statisticians led by Martin Kulldorff, a Swedish biostatistician professor of medicine at Harvard Medical School.[10] Version 1.0 of the software was first released in 1997 and has since become a widely used tool in the field of public health research and practice.[11]

SaTScan was developed in response to a growing need for sophisticated tools to analyze disease outbreaks.[2] Before the development of SaTScan, few tools were available that could effectively analyze the spatial and temporal patterns of disease, making it difficult for public health authorities to respond effectively to outbreaks.

Since its release, SaTScan has been used in many public health research studies, including infectious diseases, cancers, and other conditions.[1] Public health authorities and disease surveillance systems have also adopted the software in many countries, and it has broad applications for other types of data.[2]

SaTScan was used extensively by researchers during the COVID-19 pandemic.[12]

Applications

Epidemiology

SaTScan was originally developed for epidemiology and public health. Since its release, SaTScan has been used in many public health research studies involving GIS, including infectious diseases, cancers, and other conditions.[1] Public health authorities and disease surveillance systems have also adopted the software in many countries.[1]

Agriculture

SaTScan can identify areas of high pest or disease risk, informing crop and livestock management and disease control efforts.[13]

Astronomy

SaTScan can also be adapted and applied to certain astronomical studies, particularly those that involve analyzing spatial and temporal patterns in astronomical data.[2][14] For example, SaTScan could identify clustering patterns in the distribution of galaxies or other astronomical objects, such as stars.[14]

Criminology

SaTScan can identify hot spots and patterns in crime data, which can assist law enforcement agencies in allocating resources and developing crime reduction strategies.[2][15]

Environmental monitoring

SaTScan can identify areas of environmental concern, such as high levels of air pollution or water contamination.[16]

Wildlive surveillance

SaTScan can identify areas of high risk for wildlife diseases, which can inform disease management and conservation efforts.[17]

See also


References

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Kulldorff, Martin (2022). "SaTScanJ User Guide". SaTScan™. https://www.satscan.org/cgi-bin/satscan/register.pl/SaTScan_Users_Guide.pdf?todo=process_userguide_download. 
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 "SaTScan™ - Spatial and Space-Time Scan Statistics". https://surveillance.cancer.gov/satscan/. 
  3. ↑ Blair, Kimberly (October 26, 2014). "UWF students turn quality-of-life data detectives". Pensacola News Journal. https://www.pnj.com/story/news/2014/10/26/uwf-students-turn-quality-life-data-detectives/17983773/. 
  4. ↑ Glaz, J.; Naus, J.; Wallenstein, S. (2001). "Introduction". Scan Statistics. Springer Series in Statistics. pp. 3–9. doi:10.1007/978-1-4757-3460-7_1. ISBN 978-1-4419-3167-2. 
  5. ↑ Elias, Johannes; Harmsen, Dag; Claus, Heike; Hellenbrand, Wiebke; Frosch, Matthias; Vogel, Ulrich (2006). "Spatiotemporal Analysis of Invasive Meningococcal Disease, Germany". Emerging Infectious Diseases 12 (11): 1689–1695. PMID 17283618. PMC 3372358. https://stacks.cdc.gov/view/cdc/16407. 
  6. ↑ Yang, Shu-qin; Fang, Zheng-gang; Lv, Cai-xia; An, Shu-yi; Guan, Peng; Huang, De-sheng; Wu, Wei (February 2022). "Spatiotemporal cluster analysis of COVID-19 and its relationship with environmental factors at the city level in mainland China". Environmental Science and Pollution Research 29 (9): 13386–13395. doi:10.1007/s11356-021-16600-9. PMID 34595708. 
  7. ↑ "SaTScan". SaTScan™. https://www.satscan.org/satscanlicenseagreement.pdf. 
  8. ↑ 8.0 8.1 Kulldorff, Martin (1997). "A spatial scan statistic". Communications in Statistics – Theory and Methods 26 (6): 1481–1496. doi:10.1080/03610929708831995. http://www.satscan.org/papers/k-cstm1997.pdf. 
  9. ↑ 9.0 9.1 9.2 Cromley, Ellen K.; McLafferty, Sara L. (2002). GIS and Public Health. The Guilford Press. ISBN 1-57230-707-2. 
  10. ↑ "Martin Kulldorff, Ph.D.". https://dc.hillsdale.edu/Academy-for-Science-and-Freedom/Martin-Kulldorf/. 
  11. ↑ "SaTScan Version History". SaTScan™. https://www.satscan.org/cgi-bin/satscan/register.pl/SaTScan_Version_History.pdf?todo=process_version_history_download. 
  12. ↑ Desjardins, M.R.; Hohl, A.; Delmelle, E.M. (2020). "Rapid surveillance of COVID-19 in the United States using a prospective space-time scan statistic: Detecting and evaluating emerging clusters". Applied Geography 118: 102202. doi:10.1016/j.apgeog.2020.102202. PMID 32287518. 
  13. ↑ Frössling, Jenny; Nødtvedt, Ane; Lindberg, Ann; Björkman, Camilla (2008). "Spatial analysis of Neospora caninum distribution in dairy cattle from Sweden". Geospatial Health 3 (1): 39–45. doi:10.4081/gh.2008.230. PMID 19021107. https://pubmed.ncbi.nlm.nih.gov/19021107/. Retrieved 11 February 2023. 
  14. ↑ 14.0 14.1 de la Fuente Marcos, R.; de la Fuente Marcos, C. (January 2008). "From Star Complexes to the Field: Open Cluster Families". The Astrophysical Journal 672 (1): 342–351. doi:10.1086/524028. Bibcode: 2008ApJ...672..342D. https://ui.adsabs.harvard.edu/abs/2008ApJ...672..342D/abstract. Retrieved 11 February 2023. 
  15. ↑ Zeoli, April M.; Pizarro, Jesenia M.; Grady, Sue C.; Melde, Christopher (12 Oct 2012). "Homicide as Infectious Disease: Using Public Health Methods to Investigate the Diffusion of Homicide". Justice Quarterly 31 (3): 609–632. doi:10.1080/07418825.2012.732100. 
  16. ↑ Gao, Jie; Zhang, Zhijie; Hu, Yi; Jianchao, Bian; Jiang, Wen; Xiaoming, Wang; Liqian, Sun; Qingwu, Jiang (2014). "Geographical Distribution Patterns of Iodine in Drinking-Water and Its Associations with Geological Factors in Shandong Province, China". International Journal of Environmental Research and Public Health 11 (5): 5431–5444. doi:10.3390/ijerph110505431. PMID 24852390. 
  17. ↑ Carricondo-Sanchez, David; Odden, Morten; Linnell, John D. C.; Odden, John (April 19, 2017). "The range of the mange: Spatiotemporal patterns of sarcoptic mange in red foxes (Vulpes vulpes) as revealed by camera trapping". PLOS ONE 12 (4): e0176200. doi:10.1371/journal.pone.0176200. PMID 28423011. 

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SaTScan official website



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