Biology:Haplogroup H (Y-DNA)

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Short description: Human Y-chromosome DNA haplogroup
Haplogroup H (Y-DNA)
Haplogroup H map.png
Haplogroup H map
Possible time of origin~48,500 ybp
Possible place of originSouth Asia or West Asia[1] or Southern Central Asia[2][3]
AncestorHIJK
DescendantsH1 (L902/M3061);
H2 (P96);
H3 (Z5857)
Defining mutationsL901/M2939
Highest frequenciesSouth Asians and Roma

Haplogroup H (Y-DNA), also known as H-L901/M2939, is a Y-chromosome haplogroup.

The primary branch H1 (H-M69) and its subclades is one of the most predominant haplogroups amongst populations in South Asia, particularly its descendant H1a1 (M52). A primary branch of H-M52, H1a1a (H-M82), is found commonly among the Roma, who originated in South Asia and migrated into the Middle East and Europe, around the beginning of the 2nd millennium CE, and the Khmer people who got under influence from Indian populations.[4] The much rarer primary branch H3 (Z5857) is also concentrated in South Asia.

However, the primary branch H2 (P96) seems to have been found in sparse levels primarily in Europe and West Asia since prehistory. It has been found in remains of the Pre-Pottery Neolithic B (PPNB), which is part of the Pre-Pottery Neolithic, a Neolithic culture centered in upper Mesopotamia and the Levant, dating to c. 10,800 – c. 8,500 years ago, and also the later Linear Pottery culture and Neolithic Iberia.[5][6] H2 likely entered Europe during the Neolithic with the spread of agriculture.[6][7] Its present distribution is made up of various individual cases spread out throughout Europe and West Asia today.[8]

Structure

H-L901/M2939 is a direct descendant of Haplogroup GHIJK. There are, in turn, three direct descendants of H-L901/M2939 – their defining SNPs are as follows:

  • H1 (L902/M3061)
    • H1a previously haplogroup H1 (M69/Page45, M370)
    • H1b B108, Z34961, Z34962, Z34963, Z34964
  • H2 previously haplogroup F3,[9] (P96, L279, L281, L284, L285, L286, M282)
    • H2a FGC29299/Z19067
    • H2b Z41290
    • H2c Y21618, Z19080
  • H3 (Z5857)
    • H3a (Z5866)
    • H3b (Z13871)


Ancient distribution

H-L901/M2939 is believed to have split from HIJK 48,500 years before present.[10] It seems to represent the main Y-Chromosome haplogroup of the paleolithic inhabitants of South Asia. Possible site of introduction may be South Asia, since it is highly concentrated there.[11]

H1a

Shahr-i Sokhta and Gonur sites

Shahr-e Sukhteh, Iran and Gonur, Turkmenistan. H1a1d2 - Bronze Age, 3200-1900 BCE. [12] [13]

H1a ANCIENT SAMPLES
Sample ID Location Radiocarbon Age Y-DNA
I11459 Shahr-i Sokhta, Iran 2875-2631 calBCE H1a1d2
I10409 Gonur, Turkmenistan 2280-2044 calBCE H1a1d2


Gogdara and Barikot sites

With limited ancient DNA testing in South Asia, accordingly there is a limited amount of ancient samples for H1a, despite it being a populous and well distributed haplogroup today. The first set of ancient DNA from South Asia was published in March 2018.[14] 65 samples were collected from the Swat Valley of northern Pakistan , 2 of which belonged to H1a.[14]

H1a ANCIENT SAMPLES
Date Subclade Location Country Culture Accompanying haplogroups Source
1100-900 BC H1a1 Gogdara, Swat Valley Pakistan Udegram Iron Age E1b1b1b2, E1b1b1b2a [14]
1000-800 BC H1a1 Barikot, Swat Valley Pakistan Barikot Iron Age [14]

H2

The earliest sample of H2 is found in the Pre-Pottery Neolithic B culture of the Levant 10,000 years ago.[15] From ancient samples, it is clear that H2 also has a strong association with the spread of agriculture from Anatolia into Europe, and is commonly found with haplogroup G2a.[16] H2 was found in Neolithic Anatolia, as well as in multiple later Neolithic cultures of Europe, such as the Vinča culture in Serbia,[17] and the Megalith culture of Western Europe.[17]

The 2021 study "Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe"[7] found that while H2 is less than 0.2% in modern-day western European populations it was more common during the Neolithic, between 1.5 and 9%. They identified two major clades H2m and H2d. With respect to the current ISOGG nomenclature, H2m appears to be defined by a mix of H2, H2a, H2a1 and H2c1a SNPs while H2d appears to be defined by two H2b1 SNPs, and four additional SNPs which were previously undetected. They estimated TMRCA for H2d and H2m was  ~15.4 kya with H2m and H2d estimated TMRCAs of  ~11.8 and  ~11.9 kya respectively. H2 diversity probably existed in Near-Eastern hunter-gatherers and early farmers, and subsequently spread via the Neolithic expansion into Central and Western Europe. H2d was found along the inland/Danubian route into central Europe, but most H2m individuals are found along the Mediterranean route into Western Europe, the Iberian Peninsula and ultimately, Ireland.

There were also two occurrences of H2a found in the Neolithic Linkardstown burials in the southeast Ireland.[18] More Neolithic H2 samples have been found in Germany and France.[19]

H2 ancient samples
Date Location Country Culture Accompanying haplogroups Source
7300-6750 BC Motza Israel Levantine Pre-Pottery Neolithic B E1b1b1b2, T1a1, T1a2a (PPNB from Jordan) [15]
6500-6200 BC Barcin site, Yenişehir Valley Turkey Anatolian Neolithic G2a, I2C, C1a, J2a [20]
6500-6200 BC Barcin site, Yenişehir Valley Turkey Anatolian Neolithic G2a, I2C, C1a, J2a [20]
5832–5667 BC Старчево Serbia Vinča G2a [17]
5710–5662 BC Tell Kurdu, Amik Valley Turkey Anatolian Neolithic J1a2a, G2a2 [21]
5702–5536 BC Старчево Serbia Vinča G2a [17]
5400–5000 BC Szemely Hungary Vinča G2a2a, G2a2b2a1a [17]
3900–3600 BC La Mina site, Soria Spain Megalithic I2a2a1 [17]
3500–2500 BC Monte San Biagio, Latium Italy Rinaldone culture/Gaudo culture [22]
3925–3715 BC Arslantepe Turkey Early Bronze Age J2a1a1a2b2a, J1a2b1, E1b1b1b2a1a1, G2a2b1, J2a1a1a2b1b, R1b1a2 [21]
3366–3146 BC Arslantepe Turkey Early Bronze Age J2a1a1a2b2a, J1a2b1, E1b1b1b2a1a1, G2a2b1, J2a1a1a2b1b, R1b1a2 [21]
3336–3028 BC Dzhulyunitsa Bulgaria Bulgarian Bronze Age G2a2a1a2 [23]
2899–2678 BC El Portalon cave Spain Pre-Bell Beaker I2a2a [5]
2470–2060 BC Budapest-Bekasmegyer Hungary Kurgan Bell Beaker R1b1a1a2a1a2b1 [24]
1881–1700 BC Alalakh Turkey Levantine Middle Bronze Age II J1a2a1a2, J2b2, T1a1, L2-L595, J2a1a1a2b2a1b [25]
550–332 BC Beirut Lebanon Iron Age III Achaemenid period G2a2a1a2, G2a2b1a2, J1a2a1a2, I2a1b, Q1b [26]

Modern distribution

H1a

South Asia

H-M69 is common among populations of Bangladesh, India, Sri Lanka, Nepal and Pakistan, with lower frequency in Afghanistan.[2] The highest frequency of Halpogroup H found in tribal groups such as 87% among Koraga, 70% among Koya and 62% among Gond.[27][28] The high frequencies of H-M69 are in India, in both Dravidian and Indo-Aryan castes (32.9%).,[4][29] in Dhaka, Bangladesh (35.71%),[30] and H-M52 among Kalash (20.5%) in Pakistan.[31][28]

Haplogroup H is typically found among Indo-Aryan, Dravidian and Tribal (Indian as well as Pakistani Kalash) populations in the Indian subcontinent. In Europe it is mostly found among Roma, who belong predominantly (between 7% and 50%) to the H1a (M82) subclade.

Haplogroup H-M69 has been found in:

  • Bangladesh - 35.71% (15/42) in samples from Dhaka,[30] and 17.72% (115/649) among Bengali samples from various areas of the country.[32]
  • India - Divided into zones below:
    • South India – 27.2% (110/405) of a sample of unspecified ethnic composition.[33][34] Halpogroup H found among Dravidian tribal groups in highest frequency. Koraga people carry 87% and Koya tribe have 70% halpogroup H.[27][28] Gondi people carry around 62% of halpogroup H.[35] Another study has found haplogroup H-M69 in 26.4% (192/728) of an ethnically diverse pool of samples from various regions of India.[4]
    • West India - In Maharashtra - 33.3% of a sample of (68/204)[36] and in Gujarat, 20.69% (12/58) among Gujaratis in USA.[30] 13.8% (4/29) among unspesified Gujaratis in India,[37] 26% (13/50)among Dawoodi Bohra,[38] 27.27 (6/22) among Bhils,[39] 1.56% among Gujarati Brahmins[39]
    • North India - According to a study (Trivedi2007) it is found 24.5% (44/180) in both Caste and tribal population of North India. Most frequently found : 44.4% (8/18) among Uttar Pradesh (UP) Chamar,[4] 20.7% (6/29) among UP Rajputs,[4] 18.3% (9/49) among New Delhi Hindus,[40] 16.13% (5/31) among UP Brahmins,[39] 11.11% (6/54) among UP Kols,[39] 10.53% (2/19) among Himachal Brahmin,[39] 10.2% (5/49) in J&K Kashmiri Gujars,[39] 9.8% (5/51) in J&K Kashmiri Pandits,[39]
    • East India 14.81% (4/27) among Bihar Paswan,[39] 9.7% (3/31) among Bengalis of West Bengal (WB),[28] 5.56% (1/18) among West Bengal Brahmins.[4]
  • Sri Lanka – in 25.3% (23/91) of a sample of unspecified ethnic composition[33][34] and in 10.3% (4/39) of a sample of Sinhalese.[28]
  • Nepal – one study has found Haplogroup H-M69 in approximately 12% of a sample of males from the general population of Kathmandu (including 4/77 H-M82, 4/77 H-M52(xM82), and 1/77 H-M69(xM52, APT)) and 6% of a sample of Newars (4/66 H-M82).[41] In another study, Y-DNA that belongs to Haplogroup H-M69 has been found in 25.7% (5/37 = 13.5% H-M69 from a village in Morang District, 9/57 = 15.8% H-M69 from a village in Chitwan District, and 30/77 = 39.0% H-M69 from another village in Chitwan District) of Tharus in Nepal.[42]
  • Pakistan – in 4.1% Burusho, 20.5% Kalash, 4.2% Pashtun, and 6.3% in other Pakistanis.[4][31] Another study has found haplogroup H-M69 in approximately 8% (3/38) of a sample of Burusho (also known as Hunza), including 5% (2/38) H-M82(xM36, M97, M39/M138) and 3% (1/38) H-M36.[43]
  • Afghanistan – in 6.1% Pashtun,[2] in 7.1% Tajik.[2]

Roma people

Haplogroup H-M82 is a major lineage cluster in the Roma, especially Balkan Roma, among whom it accounts for approximately as high as 60% of males.[44] A 2-bp deletion at M82 locus defining this haplogroup was also reported in one-third of males from traditional Roma populations living in Bulgaria, Spain , and Lithuania.[45] High prevalence of Asian-specific Y chromosome haplogroup H-M82 supports their Indian origin and a hypothesis of a small number of founders diverging from a single ethnic group in India (Gresham et al. 2001).

Important studies show a limited introgression of the typical Roma Y-chromosome haplogroup H1 in several European groups, including approximately 0.61% in Gheg Albanians and 2.48% in Tosk Albanians.[46]

H1a in Roma populations
Population n/Sample size Percentage Source
Bulgarian Roma 98/248 39.5 [45]
Hungarian Roma 34/107 31.8 [47]
Kosovar Roma 25/42 59.5 [48]
Lithuanian Roma 10/20 50 [45]
Macedonian Roma 34/57 59.6 [44]
Portuguese Roma 21/126 16.7 [49]
Serbian Roma 16/46 34.8 [48]
Slovakian Roma 19/62 30.65 [47]
Spanish Roma 5/27 18.5 [45]

Europe, Caucasus, Central Asia & Middle East

Haplogroup H1a is found at much lower levels outside of the Indian subcontinent and the Roma populations but is still present in other populations:

  • Europe - 0.9% (1/113) H-M82 in a sample of Serbians,[44] 2% (1/57) H-M82 in a sample of Macedonian Greeks,[40] 1% (1/92 H-M82)[40] to 2% (1/50 H-M69)[50] of Ukrainians, H1a2a in 1.3% (1/77) of a sample of Greeks.[31]
  • Caucasus- 2.6% (1/38) H-M82 in a sample of Balkarians,[40]
  • Central Asia - 12.5% (2/16) H-M52 in a sample of Tajiks from Dushanbe,[51] 5.19% (7/135) H-M69 in a sample of Salar from Qinghai,[52] 5.13% (2/39) H (including 1/39 H(xH1,H2) and 1/39 H1) in a sample of Uyghurs from Darya Boyi Village, Yutian (Keriya) County, Xinjiang,[53] 4.65% (6/129) H-M69 in a sample of Mongols from Qinghai,[52] 4.44% (2/45) H-M52 in a sample of Uzbeks from Samarkand,[51] 3.56% (17/478) H-M69 and 0.84% (4/478) F-M89(xG-M201, H-M69, I-M258, J-M304, L-M20, N-M231, O-M175, P-M45, T-M272) in a sample of Uyghurs from the Hotan area, Xinjiang,[52] 2.86% (2/70) H-M52 in a sample of Uzbeks from Xorazm,[51] 2.44% (1/41) H-M52 in a sample of Uyghurs from Kazakhstan,[51] 1.79% (1/56) H-M52 in a sample of Uzbeks from Bukhara,[51] 1.71% (3/175) H-M69 in a sample of Hui from the Changji area, Xinjiang,[52] 1.59% (1/63) H-M52 in a sample of Uzbeks from the Fergana Valley,[51] 1.56% (1/64) H1 in a sample of Uyghurs from Qarchugha Village, Yuli (Lopnur) County, Xinjiang,[53] 1.32% (1/76) H2 in a sample of Uyghurs from Horiqol Township, Awat County, Xinjiang,[53] 0.99% (1/101) H-M69 in a sample of Kazakhs from the Hami area, Xinjiang.[52]
  • West Asia- 6% (1/17) H-M52 in a sample of Turks,[50][51] 5% (1/20) H-M69 in a sample of Syrians,[50] 4% (2/53) H-M52 in a sample of Iranians from Samarkand,[51] 2.6% (3/117) H-M82 in a sample from southern Iran,[54] 4.3% (7/164) of males from the United Arab Emirates,[55] 2% of males from Oman,[56] 1.9% (3/157) of males from Saudi Arabia,[57] 1.4% (1/72 H-M82) of males from Qatar,[55] and 0.6% (3/523) H-M370 in another sample of Turks.[58]

East & South-East Asia

At the easternmost extent of its distribution, Haplogroup H-M69 has been found in Thais from Thailand (1/17 = 5.9% H-M69 Northern Thailand;[59] 2/290 = 0.7% H-M52 Northern Thai;[60] 2/75 = 2.7% H-M69(xM52) and 1/75 = 1.3% H-M52(xM82) general population of Thailand[61]), Balinese (19/551 = 3.45% H-M69),[34] Tibetans (3/156 = 1.9% H-M69(xM52, APT)),[41] Filipinos from southern Luzon (1/55 = 1.8% H-M69(xM52)[61]), Bamars from Myanmar (1/59 = 1.7% H-M82, with the relevant individual having been sampled in Bago Region),[62] Chams from Binh Thuan, Vietnam (1/59 = 1.7% H-M69),[59] and Mongolians (1/149 = 0.7% H-M69).[33] The subclade H-M39/M138 has been observed in the vicinity of Cambodia, including one instance in a sample of six Cambodians[4] and one instance in a sample of 18 individuals from Cambodia and Laos.[43] A genome study about Khmer people resulted in an average amount of 16,5% of Khmer belonging to y-DNA H.[4]

H1b

H1b is defined by the SNPs - B108, Z34961, Z34962, Z34963, and Z34964.[63] Only discovered in 2015, H1b was detected in a single sample from an individual in Myanmar.[64] Due to only being classified recently, there are currently no studies recording H1b in modern populations.

H2

H2 (H-P96), which is defined by seven SNPs – P96, M282, L279, L281, L284, L285, and L286 – is the only primary branch found mainly outside South Asia.[63] Formerly named F3, H2 was reclassified as belonging to haplogroup H due to sharing the marker M3035 with H1.[65] While being found in numerous ancient samples, H2 has only been found scarcely in modern populations across West Eurasia.[5]

H2 in modern populations
Region Population n/Sample size Percentage Source
Central Asia Dolan 1/76 1.3 [66]
West Asia UAE 1/164 0.6 [67]
West Asia South Iran 2/117 1.7 [68]
West Asia Assyrian 1/181 0.5 [69]
West Asia Armenia 5/900 0.6 [70]
Southern Europe Sardinia 2/1194 0.2 [71]

H3

H3 (Z5857) like H1, is also mostly centered in South Asia, albeit at much lower frequencies.[64]

Like other branches of H, due to it being newly classified it is not explicitly found in modern population studies. Samples belonging to H3 were likely labeled under F*.[64] In consumer testing, it has been found principally among South Indians and Sri Lankans, and other areas of Asia such as Arabia as well.[10]

The following gives a summary of most of the studies which specifically tested for the subclades H1a1a (H-M82) and H2 (H-P96), formerly F3, showing its distribution in different part of the world.[72]

Continent/subcontinental region Country &/or ethnicity Sample size H1a1a (M82) freq. (%) Source
East/Southeast Asia Cambodia 6 16.67 Sengupta et al. 2006
East/Southeast Asia Cambodia/Laos 18 5.56 Underhill et al. 2000
South Asia Nepal 188 4.25 Gayden et al. 2007
South Asia Afghanistan 204 3.43 Haber et al. 2012
South Asia Malaysian Indians 301 18.94 Pamjav et al. 2011
South Asia Terai-Nepal 197 10.66 Fornarino et al. 2009
South Asia Hindu New Delhi 49 10.2 Fornarino et al. 2009
South Asia Andhra Pradesh Tribals 29 27.6 Fornarino et al. 2009
South Asia Chenchu Tribe India 41 36.6 Kivisild et al. 2003
South Asia Koya Tribe India 41 70.7 Kivisild et al. 2003
South Asia West Bengal India 31 9.6 Kivisild et al. 2003
South Asia Konkanastha Brahmin India 43 9.3 Kivisild et al. 2003
South Asia Gujarat India 29 13.8 Kivisild et al. 2003
South Asia Lambadi India 35 8.6 Kivisild et al. 2003
South Asia Punjab India 66 4.5 Kivisild et al. 2003
South Asia Sinhalese Sri Lanka 39 10.3 Kivisild et al. 2003
South Asia Northwest India 842 14.49 Rai et al.2012
South Asia South India 1845 20.05 Rai et al.2012
South Asia Central India 863 14.83 Rai et al.2012
South Asia North India 622 13.99 Rai et al.2012
South Asia East India 1706 8.44 Rai et al.2012
South Asia West India 501 17.17 Rai et al.2012
South Asia Northeast India 1090 0.18 Rai et al.2012
South Asia Andaman Island 20 0 Thangaraj et al. 2003
Middle East and North Africa Saudi Arabia 157 0.64 Abu-Amero et al. 2009
Middle East and North Africa Turkish 523 0.19 Cinnioglu et al. 2004
Middle East and North Africa Iran 150 2 Abu-Amero et al. 2009
Middle East and North Africa Iran 938 1.2 Grugni et al. 2012

See also

References

  1. ↑ Mahal, David G.; Matsoukas, Ianis G. (2018). "The Geographic Origins of Ethnic Groups in the Indian Subcontinent: Exploring Ancient Footprints with Y-DNA Haplogroups". Frontiers in Genetics 9: 4. doi:10.3389/fgene.2018.00004. PMID 29410676. 
  2. ↑ 2.0 2.1 2.2 2.3 "Afghanistan's ethnic groups share a Y-chromosomal heritage structured by historical events". PLOS ONE 7 (3): e34288. 2012. doi:10.1371/journal.pone.0034288. PMID 22470552. Bibcode: 2012PLoSO...734288H. 
  3. ↑ Tariq, Muhammad; Ahmad, Habib; Hemphill, Brian E.; Farooq, Umar; Schurr, Theodore G. (2022). "Contrasting maternal and paternal genetic histories among five ethnic groups from Khyber Pakhtunkhwa, Pakistan". Scientific Reports 12 (1): 1027. doi:10.1038/s41598-022-05076-3. PMID 35046511. Bibcode: 2022NatSR..12.1027T. 
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". American Journal of Human Genetics 78 (2): 202–221. February 2006. doi:10.1086/499411. PMID 16400607. 
  5. ↑ 5.0 5.1 5.2 "Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques". Proceedings of the National Academy of Sciences of the United States of America 112 (38): 11917–11922. September 2015. doi:10.1073/pnas.1509851112. PMID 26351665. Bibcode: 2015PNAS..11211917G. 
  6. ↑ 6.0 6.1 "Ancient DNA from European early neolithic farmers reveals their near eastern affinities". PLOS Biology 8 (11): e1000536. November 2010. doi:10.1371/journal.pbio.1000536. PMID 21085689. 
  7. ↑ 7.0 7.1 Rohrlach, Adam B.; Papac, Luka; Childebayeva, Ainash; Rivollat, Maïté; Villalba-Mouco, Vanessa; Neumann, Gunnar U.; Penske, Sandra; Skourtanioti, Eirini et al. (22 July 2021). "Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe". Scientific Reports 11 (1): 15005. doi:10.1038/s41598-021-94491-z. PMID 34294811. 
  8. ↑ St. Clairl, Michael (March 2018). "Haplogroup H-M2713.". St. Clair Database. http://www.genlinginterface.com/wp-content/uploads/2018/03/Hg-H-M2713-Update.pdf. 
  9. ↑ Magoon GR, Banks RH, Rottensteiner C, Schrack BE, Tilroe VO, Robb T, Grierson AJ (2013). "Generation of high-resolution a priori Y-chromosome phylogenies using next-generation sequencing data". bioRxiv 10.1101/000802.
  10. ↑ 10.0 10.1 "H YTree". YFull. https://www.yfull.com/tree/H/. 
  11. ↑ Tariq, Muhammad; Ahmad, Habib; Hemphill, Brian E.; Farooq, Umar; Schurr, Theodore G. (19 January 2022). "Contrasting maternal and paternal genetic histories among five ethnic groups from Khyber Pakhtunkhwa, Pakistan" (in en). Scientific Reports 12 (1): 1027. doi:10.1038/s41598-022-05076-3. ISSN 2045-2322. PMID 35046511. Bibcode: 2022NatSR..12.1027T. 
  12. ↑ Narasimhan, Vagheesh M. et al. (2019). "The formation of human populations in South and Central Asia". Science 365 (6457). doi:10.1126/science.aat7487. PMID 31488661. 
  13. ↑ "Indus Valley DNA". 2 May 2022. https://dharmawiki.org/index.php/Indus_Valley_DNA. 
  14. ↑ 14.0 14.1 14.2 14.3 Narasimhan VM, Patterson NJ, Moorjani P, Lazaridis I, Mark L, Mallick S, Rohland N, Bernardos R, Kim AM, Nakatsuka N, Olalde I (31 March 2018). "The Genomic Formation of South and Central Asia". bioRxiv 10.1101/292581.
  15. ↑ 15.0 15.1 "Genomic insights into the origin of farming in the ancient Near East". Nature 536 (7617): 419–424. August 2016. doi:10.1038/nature19310. PMID 27459054. Bibcode: 2016Natur.536..419L. 
  16. ↑ "Early farmers from across Europe directly descended from Neolithic Aegeans". Proceedings of the National Academy of Sciences of the United States of America 113 (25): 6886–6891. June 2016. doi:10.1073/pnas.1523951113. PMID 27274049. Bibcode: 2016PNAS..113.6886H. 
  17. ↑ 17.0 17.1 17.2 17.3 17.4 17.5 "Parallel palaeogenomic transects reveal complex genetic history of early European farmers". Nature 551 (7680): 368–372. November 2017. doi:10.1038/nature24476. PMID 29144465. Bibcode: 2017Natur.551..368L. 
  18. ↑ Cassidy, Lara M.; Maoldúin, Ros Ó; Kador, Thomas; Lynch, Ann; Jones, Carleton; Woodman, Peter C.; Murphy, Eileen; Ramsey, Greer et al. (17 June 2020). "A dynastic elite in monumental Neolithic society". Nature 582 (7812): 384–388. doi:10.1038/s41586-020-2378-6. ISSN 0028-0836. PMID 32555485. Bibcode: 2020Natur.582..384C. 
  19. ↑ Rivollat, Maïté; Jeong, Choongwon; Schiffels, Stephan; Küçükkalıpçı, İşil; Pemonge, Marie-Hélène; Rohrlach, Adam Benjamin; Alt, Kurt W.; Binder, Didier et al. (29 May 2020). "Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers". Science Advances 6 (22): eaaz5344. doi:10.1126/sciadv.aaz5344. PMID 32523989. Bibcode: 2020SciA....6.5344R. 
  20. ↑ 20.0 20.1 Mathieson I, Lazaridis I, Rohland N, Mallick S, Patterson N, Roodenberg SA, Harney E, Stewardson K, Fernandes D, Novak M, Sirak K (10 October 2015). "Eight thousand years of natural selection in Europe". bioRxiv 10.1101/016477.
  21. ↑ 21.0 21.1 21.2 Skourtanioti, Eirini; Erdal, Yilmaz S.; Frangipane, Marcella; Balossi Restelli, Francesca; Yener, K. Aslıhan; Pinnock, Frances; Matthiae, Paolo; Özbal, Rana et al. (2020). "Genomic History of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus". Cell 181 (5): 1158–1175.e28. doi:10.1016/j.cell.2020.04.044. PMID 32470401. 
  22. ↑ Antonio, Margaret L.; Gao, Ziyue; M. Moots, Hannah (2019). "Ancient Rome: A genetic crossroads of Europe and the Mediterranean" (in en). Science (Washington D.C.: American Association for the Advancement of Science) 366 (6466): 708–714. 8 November 2019. doi:10.1126/science.aay6826. PMID 31699931. Bibcode: 2019Sci...366..708A. 
  23. ↑ Mathieson I, Alpaslan-Roodenberg S, Posth C, Szécsényi-Nagy A, Rohland N, Mallick S, Olalde I, Broomandkhoshbacht N, Candilio F, Cheronet O, Fernandes D (9 May 2017). "The Genomic History Of Southeastern Europe". bioRxiv 10.1101/135616.
  24. ↑ Olalde Í (2016). From the Mesolithic to the Bronze Age: unraveling 5,000 years of European population history with paleogenomics (PDF) (Ph.D. thesis). Barcelona, Spain: Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra). hdl:10803/403608.
  25. ↑ Skourtanioti, Eirini; Erdal, Yilmaz; Frangipane, Marcella; Balossi Restelli, Francesca; Yener, K (2020). "Genomic History of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus". Cell 181 (5): 1158–1175.e28. doi:10.1016/j.cell.2020.04.044. PMID 32470401. 
  26. ↑ Haber, Marc. "A Genetic History of the Near East from an aDNA Time Course Sampling Eight Points in the Past 4,000 Years". Cell. https://www.cell.com/ajhg/pdfExtended/S0002-9297(20)30155-5. 
  27. ↑ 27.0 27.1 "Independent origins of Indian caste and tribal paternal lineages". Current Biology 14 (3): 231–235. February 2004. doi:10.1016/j.cub.2004.01.024. PMID 14761656. 
  28. ↑ 28.0 28.1 28.2 28.3 28.4 "The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations". American Journal of Human Genetics 72 (2): 313–332. February 2003. doi:10.1086/346068. PMID 12536373. 
  29. ↑ "A prehistory of Indian Y chromosomes: evaluating demic diffusion scenarios". Proceedings of the National Academy of Sciences of the United States of America 103 (4): 843–848. January 2006. doi:10.1073/pnas.0507714103. PMID 16415161. Bibcode: 2006PNAS..103..843S. 
  30. ↑ 30.0 30.1 30.2 Poznik, G. David; Xue, Yali; Mendez, Fernando L.; Willems, Thomas F.; Massaia, Andrea; Wilson Sayres, Melissa A.; Ayub, Qasim; McCarthy, Shane A. et al. (June 2016). "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences". Nature Genetics 48 (6): 593–599. doi:10.1038/ng.3559. ISSN 1061-4036. PMID 27111036. 
  31. ↑ 31.0 31.1 31.2 "Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan". European Journal of Human Genetics 15 (1): 121–126. January 2007. doi:10.1038/sj.ejhg.5201726. PMID 17047675. 
  32. ↑ Mahmud H (November 2019). GENETIC DIVERSITY AMONG BANGALI AND SEVEN ETHNIC GROUPS OF BANGLADESH BASED ON Y-CHROMOSOME (PDF) (Ph.D. thesis). Dhaka, Bangladesh: Dhaka University. pp. 100–05.
  33. ↑ 33.0 33.1 33.2 "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes". Journal of Human Genetics 51 (1): 47–58. 2006. doi:10.1007/s10038-005-0322-0. PMID 16328082. 
  34. ↑ 34.0 34.1 34.2 "Balinese Y-chromosome perspective on the peopling of Indonesia: genetic contributions from pre-neolithic hunter-gatherers, Austronesian farmers, and Indian traders". Human Biology 77 (1): 93–114. February 2005. doi:10.1353/hub.2005.0030. PMID 16114819. 
  35. ↑ "The Indian origin of paternal haplogroup R1a1* substantiates the autochthonous origin of Brahmins and the caste system". Journal of Human Genetics 54 (1): 47–55. January 2009. doi:10.1038/jhg.2008.2. PMID 19158816. 
  36. ↑ Sahoo, Sanghamitra; Singh, Anamika; Himabindu, G.; Banerjee, Jheelam; Sitalaximi, T.; Gaikwad, Sonali; Trivedi, R.; Endicott, Phillip et al. (24 January 2006). "A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios". Proceedings of the National Academy of Sciences of the United States of America 103 (4): 843–848. doi:10.1073/pnas.0507714103. ISSN 0027-8424. PMID 16415161. Bibcode: 2006PNAS..103..843S. 
  37. ↑ Kivisild, T.; Rootsi, S.; Metspalu, M.; Mastana, S.; Kaldma, K.; Parik, J.; Metspalu, E.; Adojaan, M. et al. (February 2003). "The Genetic Heritage of the Earliest Settlers Persists Both in Indian Tribal and Caste Populations". The American Journal of Human Genetics 72 (2): 313–332. doi:10.1086/346068. ISSN 0002-9297. PMID 12536373. 
  38. ↑ Eaaswarkhanth, Muthukrishnan; Haque, Ikramul; Ravesh, Zeinab; Romero, Irene Gallego; Meganathan, Poorlin Ramakodi; Dubey, Bhawna; Khan, Faizan Ahmed; Chaubey, Gyaneshwer et al. (March 2010). "Traces of sub-Saharan and Middle Eastern lineages in Indian Muslim populations". European Journal of Human Genetics 18 (3): 354–363. doi:10.1038/ejhg.2009.168. ISSN 1018-4813. PMID 19809480. 
  39. ↑ 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 Sharma, Swarkar; Rai, Ekta; Sharma, Prithviraj; Jena, Mamata; Singh, Shweta; Darvishi, Katayoon; Bhat, Audesh K.; Bhanwer, A. J. S. et al. (January 2009). "The Indian origin of paternal haplogroup R1a1 * substantiates the autochthonous origin of Brahmins and the caste system" (in en). Journal of Human Genetics 54 (1): 47–55. doi:10.1038/jhg.2008.2. ISSN 1435-232X. PMID 19158816. 
  40. ↑ 40.0 40.1 40.2 40.3 "Y-chromosomal evidence of the cultural diffusion of agriculture in Southeast Europe". European Journal of Human Genetics 17 (6): 820–830. June 2009. doi:10.1038/ejhg.2008.249. PMID 19107149. 
  41. ↑ 41.0 41.1 "The Himalayas as a directional barrier to gene flow". American Journal of Human Genetics 80 (5): 884–894. May 2007. doi:10.1086/516757. PMID 17436243. 
  42. ↑ "Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation". BMC Evolutionary Biology 9 (1): 154. July 2009. doi:10.1186/1471-2148-9-154. PMID 19573232. Bibcode: 2009BMCEE...9..154F. 
  43. ↑ 43.0 43.1 "Y chromosome sequence variation and the history of human populations". Nature Genetics 26 (3): 358–361. November 2000. doi:10.1038/81685. PMID 11062480. 
  44. ↑ 44.0 44.1 44.2 "High-resolution phylogenetic analysis of southeastern Europe traces major episodes of paternal gene flow among Slavic populations". Molecular Biology and Evolution 22 (10): 1964–1975. October 2005. doi:10.1093/molbev/msi185. PMID 15944443. 
  45. ↑ 45.0 45.1 45.2 45.3 "Origins and divergence of the Roma (gypsies)". American Journal of Human Genetics 69 (6): 1314–1331. December 2001. doi:10.1086/324681. PMID 11704928. 
  46. ↑ "Y-STR variation in Albanian populations: implications on the match probabilities and the genetic legacy of the minority claiming an Egyptian descent". International Journal of Legal Medicine 124 (5): 363–370. September 2010. doi:10.1007/s00414-010-0432-x. PMID 20238122. 
  47. ↑ 47.0 47.1 "Genetic structure of the paternal lineage of the Roma people". American Journal of Physical Anthropology 145 (1): 21–29. May 2011. doi:10.1002/ajpa.21454. PMID 21484758. 
  48. ↑ 48.0 48.1 "Divergent patrilineal signals in three Roma populations". American Journal of Physical Anthropology 144 (1): 80–91. January 2011. doi:10.1002/ajpa.21372. PMID 20878647. 
  49. ↑ "A perspective on the history of the Iberian gypsies provided by phylogeographic analysis of Y-chromosome lineages". Annals of Human Genetics 72 (Pt 2): 215–227. March 2008. doi:10.1111/j.1469-1809.2007.00421.x. PMID 18205888. 
  50. ↑ 50.0 50.1 50.2 "The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective". Science 290 (5494): 1155–1159. November 2000. doi:10.1126/science.290.5494.1155. PMID 11073453. Bibcode: 2000Sci...290.1155S. 
  51. ↑ 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 "The Eurasian heartland: A continental perspective on Y-chromosome diversity". Proceedings of the National Academy of Sciences of the United States of America 98 (18): 10244–10249. August 2001. doi:10.1073/pnas.171305098. PMID 11526236. Bibcode: 2001PNAS...9810244W. 
  52. ↑ 52.0 52.1 52.2 52.3 52.4 Lu Yan (2011), "Genetic Mixture of Populations in Western China." Shanghai: Fudan University, 2011: 1-84. (Doctoral dissertation in Chinese: 陆艳, “中国西部人群的遗传混合”, 上海：复旦大学，2011: 1-84.)
  53. ↑ 53.0 53.1 53.2 LIU Shuhu, NIZAM Yilihamu, RABIYAMU Bake, ABDUKERAM Bupatima, and DOLKUN Matyusup, "A study of genetic diversity of three isolated populations in Xinjiang using Y-SNP." Acta Anthropologica Sinica, 2018, 37(1): 146-156.
  54. ↑ "Iran: tricontinental nexus for Y-chromosome driven migration". Human Heredity 61 (3): 132–143. 2006. doi:10.1159/000093774. PMID 16770078. 
  55. ↑ 55.0 55.1 "Y-chromosome diversity characterizes the Gulf of Oman". European Journal of Human Genetics 16 (3): 374–386. March 2008. doi:10.1038/sj.ejhg.5201934. PMID 17928816. 
  56. ↑ "The Levant versus the Horn of Africa: evidence for bidirectional corridors of human migrations". American Journal of Human Genetics 74 (3): 532–544. March 2004. doi:10.1086/382286. PMID 14973781. 
  57. ↑ "Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions". BMC Genetics 10: 59. September 2009. doi:10.1186/1471-2156-10-59. PMID 19772609. 
  58. ↑ "Excavating Y-chromosome haplotype strata in Anatolia". Human Genetics 114 (2): 127–148. January 2004. doi:10.1007/s00439-003-1031-4. PMID 14586639. 
  59. ↑ 59.0 59.1 "Patrilineal perspective on the Austronesian diffusion in Mainland Southeast Asia". PLOS ONE 7 (5): e36437. 2012. doi:10.1371/journal.pone.0036437. PMID 22586471. Bibcode: 2012PLoSO...736437H. 
  60. ↑ "Y chromosomal evidence on the origin of northern Thai people". PLOS ONE 12 (7): e0181935. 2017. doi:10.1371/journal.pone.0181935. PMID 28742125. Bibcode: 2017PLoSO..1281935B. 
  61. ↑ 61.0 61.1 "Taiwan Y-chromosomal DNA variation and its relationship with Island Southeast Asia". BMC Genetics 15: 77. June 2014. doi:10.1186/1471-2156-15-77. PMID 24965575. 
  62. ↑ "Retrieving Y chromosomal haplogroup trees using GWAS data". European Journal of Human Genetics 22 (8): 1046–1050. August 2014. doi:10.1038/ejhg.2013.272. PMID 24281365. 
  63. ↑ 63.0 63.1 International Society of Genetic Genealogy (25 May 2016). "Y-DNA Haplogroup Tree 2016 Version: 11.144". http://www.isogg.org/tree/ISOGG_HapgrpH.html. 
  64. ↑ 64.0 64.1 64.2 "A recent bottleneck of Y chromosome diversity coincides with a global change in culture". Genome Research 25 (4): 459–466. April 2015. doi:10.1101/gr.186684.114. PMID 25770088. "Supplementary Information". https://genome.cshlp.org/content/suppl/2015/02/18/gr.186684.114.DC1/Supplemental_Text.pdf. 
  65. ↑ "Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome". Human Mutation 35 (2): 187–191. February 2014. doi:10.1002/humu.22468. PMID 24166809. 
  66. ↑ "A study of genetic diversity of three isolated populations in Xinjiang using Y-SNP". Acta Anthropologica Sinica. 2018. http://en.cnki.com.cn/Article_en/CJFDTotal-RLXB201801015.htm. 
  67. ↑ Cadenas A (8 November 2006). Y-chromosome polymorphisms in southern Arabia (Master of Science (MS) thesis). Florida International University. doi:10.25148/etd.FI14052526.
  68. ↑ "Iran: tricontinental nexus for Y-chromosome driven migration". Human Heredity 61 (3): 132–143. 2006. doi:10.1159/000093774. PMID 16770078. 
  69. ↑ "Assyrian". Gene by Gene, Ltd.. https://www.familytreedna.com/groups/assyrian-heritage-dna-project/about. 
  70. ↑ "Armenian DNA Project". FamilyTreeDNA. Gene by Gene, Ltd.. https://www.familytreedna.com/groups/armeniadnaproject/dna-results. 
  71. ↑ "Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny". Science 341 (6145): 565–569. August 2013. doi:10.1126/science.1237947. PMID 23908240. Bibcode: 2013Sci...341..565F. 
  72. ↑ "The phylogeography of Y-chromosome haplogroup h1a1a-m82 reveals the likely Indian origin of the European Romani populations". PLOS ONE 7 (11): e48477. 2012. doi:10.1371/journal.pone.0048477. PMID 23209554. Bibcode: 2012PLoSO...748477R. 

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