Publication bias

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Short description: Higher probability of publishing results showing a significant finding


In published academic research, publication bias occurs when the outcome of an experiment or research study biases the decision to publish or otherwise distribute it. Publishing only results that show a significant finding disturbs the balance of findings in favor of positive results.[1] The study of publication bias is an important topic in metascience.

Despite similar quality of execution and design,[2] papers with statistically significant results are three times more likely to be published than those with null results.[3] This unduly motivates researchers to manipulate their practices to ensure statistically significant results, such as by data dredging.[4]

Many factors contribute to publication bias.[5][6] For instance, once a scientific finding is well established, it may become newsworthy to publish reliable papers that fail to reject the null hypothesis.[7] Most commonly, investigators simply decline to submit results, leading to non-response bias. Investigators may also assume they made a mistake, find that the null result fails to support a known finding, lose interest in the topic, or anticipate that others will be uninterested in the null results.[2] The nature of these issues and the resulting problems form the five diseases that threaten science: "significosis, an inordinate focus on statistically significant results; neophilia, an excessive appreciation for novelty; theorrhea, a mania for new theory; arigorium, a deficiency of rigor in theoretical and empirical work; and finally, disjunctivitis, a proclivity to produce many redundant, trivial, and incoherent works."[8]

Attempts to find unpublished studies often prove difficult or are unsatisfactory.[5] In an effort to combat this problem, some journals require studies submitted for publication pre-register (before data collection and analysis) with organizations like the Center for Open Science.

Other proposed strategies to detect and control for publication bias[5] include p-curve analysis[9] and disfavoring small and non-randomized studies due to high susceptibility to error and bias.[2]

Definition

Publication bias occurs when the publication of research results depends not just on the quality of the research but also on the hypothesis tested, and the significance and direction of effects detected.[10] The subject was first discussed in 1959 by statistician Theodore Sterling to refer to fields in which "successful" research is more likely to be published. As a result, "the literature of such a field consists in substantial part of false conclusions resulting from errors of the first kind in statistical tests of significance".[11] In the worst case, false conclusions could canonize as being true if the publication rate of negative results is too low.[12]

Publication bias is sometimes called the file-drawer effect, or file-drawer problem. This term suggests that results not supporting the hypotheses of researchers often go no further than the researchers' file drawers, leading to a bias in published research.[13] The term "file drawer problem" was coined by psychologist Robert Rosenthal in 1979.[14]

Positive-results bias, a type of publication bias, occurs when authors are more likely to submit, or editors are more likely to accept, positive results than negative or inconclusive results.[15] Outcome reporting bias occurs when multiple outcomes are measured and analyzed, but the reporting of these outcomes is dependent on the strength and direction of its results. A generic term coined to describe these post-hoc choices is HARKing ("Hypothesizing After the Results are Known").[16]

Evidence

Funnel plot of a meta-analysis of stereotype threat on girls' math scores showing asymmetry typical of publication bias. From Flore, P. C., & Wicherts, J. M. (2015)[17]

There is extensive meta-research on publication bias in the biomedical field. Investigators following clinical trials from the submission of their protocols to ethics committees (or regulatory authorities) until the publication of their results observed that those with positive results are more likely to be published.[18][19][20] In addition, studies often fail to report negative results when published, as demonstrated by research comparing study protocols with published articles.[21][22]

The presence of publication bias was investigated in meta-analyses. The largest such analysis investigated the presence of publication bias in systematic reviews of medical treatments from the Cochrane Library.[23] The study showed that statistically positive significant findings are 27% more likely to be included in meta-analyses of efficacy than other findings. Results showing no evidence of adverse effects have a 78% greater probability of inclusion in safety studies than statistically significant results showing adverse effects. Evidence of publication bias was found in meta-analyses published in prominent medical journals.[24]

Meta-analyses (reviews) have been performed in the field of ecology and environmental biology. In a study of 100 meta-analyses in ecology, only 49% tested for publication bias.[25] While there are multiple tests that have been developed to detect publication bias, most perform poorly in the field of ecology because of high levels of heterogeneity in the data and that often observations are not fully independent.[26]

(As of 1998), "No trial published in China or Russia/USSR found a test treatment to be ineffective."[27]

Impact on meta-analysis

Where publication bias is present, published studies are no longer a representative sample of the available evidence. This bias distorts the results of meta-analyses and systematic reviews. For example, evidence-based medicine is increasingly reliant on meta-analysis to assess evidence.

Conceptual illustration of how publication bias affects effect estimates in a meta-analysis. When negative effects are not published, the overall effect estimate tends to be inflated. From Nilsonne (2023).[28]

Meta-analyses and systematic reviews can account for publication bias by including evidence from unpublished studies and the grey literature. The presence of publication bias can also be explored by constructing a funnel plot in which the estimate of the reported effect size is plotted against a measure of precision or sample size. The premise is that the scatter of points should reflect a funnel shape, indicating that the reporting of effect sizes is not related to their statistical significance.[29] However, when small studies are predominately in one direction (usually the direction of larger effect sizes), asymmetry will ensue and this may be indicative of publication bias.[30]

Because an inevitable degree of subjectivity exists in the interpretation of funnel plots, several tests have been proposed for detecting funnel plot asymmetry.[29][31][32] These are often based on linear regression including the popular Eggers regression test,[33] and may adopt a multiplicative or additive dispersion parameter to adjust for the presence of between-study heterogeneity. Some approaches may even attempt to compensate for the (potential) presence of publication bias,[23][34][35] which is particularly useful to explore the potential impact on meta-analysis results.[36][37][38]

In ecology and environmental biology, a study found that publication bias impacted the effect size, statistical power, and magnitude. The prevalence of publication bias distorted confidence in meta-analytic results, with 66% of initially statistically significant meta-analytic means becoming non-significant after correcting for publication bias.[39] Ecological and evolutionary studies consistently had low statistical power (15%) with a 4-fold exaggeration of effects on average (Type M error rates = 4.4).

The presence of publication bias can be detected by Time-lag bias tests, where time-lag bias occurs when larger or statistically significant effects are published more quickly than smaller or non-statistically significant effects. It can manifest as a decline in the magnitude of the overall effect over time. The key feature of time-lag bias tests is that, as more studies accumulate, the mean effect size is expected to converge on its true value.[26]

Compensation examples

Two meta-analyses of the efficacy of reboxetine as an antidepressant demonstrated attempts to detect publication bias in clinical trials. Based on positive trial data, reboxetine was originally passed as a treatment for depression in many countries in Europe and the UK in 2001 (though in practice it is rarely used for this indication). A 2010 meta-analysis concluded that reboxetine was ineffective and that the preponderance of positive-outcome trials reflected publication bias, mostly due to trials published by the drug manufacturer Pfizer. A subsequent meta-analysis published in 2011, based on the original data, found flaws in the 2010 analyses and suggested that the data indicated reboxetine was effective in severe depression (see Reboxetine § Efficacy). Examples of publication bias are given by Ben Goldacre[40] and Peter Wilmshurst.[41]

In the social sciences, a study of published papers exploring the relationship between corporate social and financial performance found that "in economics, finance, and accounting journals, the average correlations were only about half the magnitude of the findings published in Social Issues Management, Business Ethics, or Business and Society journals".[42]

One example cited as an instance of publication bias is the refusal to publish attempted replications of Bem's work that claimed evidence for precognition by The Journal of Personality and Social Psychology (the original publisher of Bem's article).[43]

An analysis[44] comparing studies of gene-disease associations originating in China to those originating outside China found that those conducted within the country reported a stronger association and a more statistically significant result.[45]

Risks

John Ioannidis argues that "claimed research findings may often be simply accurate measures of the prevailing bias."[46] He lists the following factors as those that make a paper with a positive result more likely to enter the literature and suppress negative-result papers:

  • The studies conducted in a field have small sample sizes.
  • The effect sizes in a field tend to be smaller.
  • There is both a greater number and lesser preselection of tested relationships.
  • There is greater flexibility in designs, definitions, outcomes, and analytical modes.
  • There are prejudices (financial interest, political, or otherwise).
  • The scientific field is hot and there are more scientific teams pursuing publication.

Other factors include experimenter bias and white hat bias.

Remedies

Publication bias can be contained through better-powered studies, enhanced research standards, and careful consideration of true and non-true relationships.[46] Better-powered studies refer to large studies that deliver definitive results or test major concepts and lead to low-bias meta-analysis. Enhanced research standards such as the pre-registration of protocols, the registration of data collections and adherence to established protocols are other techniques. To avoid false-positive results, the experimenter must consider the chances that they are testing a true or non-true relationship. This can be undertaken by properly assessing the false positive report probability based on the statistical power of the test[47] and reconfirming (whenever ethically acceptable) established findings of prior studies known to have minimal bias.

Study registration

In September 2004, editors of prominent medical journals (including the New England Journal of Medicine, The Lancet, Annals of Internal Medicine, and JAMA) announced that they would no longer publish results of drug research sponsored by pharmaceutical companies, unless that research was registered in a public clinical trials registry database from the start.[48] Furthermore, some journals (e.g. Trials), encourage publication of study protocols in their journals.[49]

The World Health Organization (WHO) agreed that basic information about all clinical trials should be registered at the study's inception, and that this information should be publicly accessible through the WHO International Clinical Trials Registry Platform. Additionally, public availability of complete study protocols, alongside reports of trials, is becoming more common for studies.[50]

See also


References

  1. ↑ Song, F.; Parekh, S.; Hooper, L.; Loke, Y. K.; Ryder, J.; Sutton, A. J.; Hing, C.; Kwok, C. S. et al. (2010). "Dissemination and publication of research findings: An updated review of related biases". Health Technology Assessment 14 (8): iii, iix–xi, iix–193. doi:10.3310/hta14080. PMID 20181324. 
  2. ↑ 2.0 2.1 2.2 Easterbrook, P. J.; Berlin, J. A.; Gopalan, R.; Matthews, D. R. (1991). "Publication bias in clinical research". Lancet 337 (8746): 867–872. doi:10.1016/0140-6736(91)90201-Y. PMID 1672966. 
  3. ↑ Dickersin, K. et al. (1987). "Publication bias and clinical trials". Controlled Clinical Trials 8 (4): 343–353. doi:10.1016/0197-2456(87)90155-3. PMID 3442991. 
  4. ↑ Pearce, J; Derrick, B (2019). "Preliminary testing: The devil of statistics?". Reinvention: An International Journal of Undergraduate Research 12 (2). doi:10.31273/reinvention.v12i2.339. 
  5. ↑ 5.0 5.1 5.2 H. Rothstein, A. J. Sutton and M. Borenstein. (2005). Publication bias in meta-analysis: prevention, assessment and adjustments. Wiley. Chichester, England ; Hoboken, NJ.
  6. ↑ Chopra, Felix; Haaland, Ingar; Roth, Christopher; Stegmann, Andreas (2023). "The Null Result Penalty". The Economic Journal 134 (657): 193–219. doi:10.1093/ej/uead060. ISSN 0013-0133. https://doi.org/10.1093/ej/uead060. 
  7. ↑ Luijendijk, HJ; Koolman, X (May 2012). "The incentive to publish negative studies: how beta-blockers and depression got stuck in the publication cycle.". J Clin Epidemiol 65 (5): 488–92. doi:10.1016/j.jclinepi.2011.06.022. PMID 22342262. 
  8. ↑ Antonakis, John (February 2017). "On doing better science: From thrill of discovery to policy implications". The Leadership Quarterly 28 (1): 5–21. doi:10.1016/j.leaqua.2017.01.006. https://serval.unil.ch/resource/serval:BIB_8EF01CB80A64.P001/REF.pdf. 
  9. ↑ Simonsohn, Uri; Nelson, Leif D.; Simmons, Joseph P. (2014). "P-curve: A key to the file-drawer.". Journal of Experimental Psychology: General 143 (2): 534–547. doi:10.1037/a0033242. PMID 23855496. 
  10. ↑ K. Dickersin (March 1990). "The existence of publication bias and risk factors for its occurrence". JAMA 263 (10): 1385–9. doi:10.1001/jama.263.10.1385. PMID 2406472. 
  11. ↑ Sterling, Theodore D. (March 1959). "Publication decisions and their possible effects on inferences drawn from tests of significance—or vice versa". Journal of the American Statistical Association 54 (285): 30–34. doi:10.2307/2282137. 
  12. ↑ Nissen, Silas Boye; Magidson, Tali; Gross, Kevin; Bergstrom, Carl (December 20, 2016). "Research: Publication bias and the canonization of false facts". eLife 5: e21451. doi:10.7554/eLife.21451. PMID 27995896. 
  13. ↑ Jeffrey D. Scargle (2000). "Publication bias: the "file-drawer problem" in scientific inference". Journal of Scientific Exploration 14 (1): 91–106. Bibcode: 1999physics...9033S. https://www.scientificexploration.org/docs/14/jse_14_1_scargle.pdf. 
  14. ↑ Rosenthal R (1979). "File drawer problem and tolerance for null results". Psychol Bull 86 (3): 638–41. doi:10.1037/0033-2909.86.3.638. 
  15. ↑ D.L. Sackett (1979). "Bias in analytic research". J Chronic Dis 32 (1–2): 51–63. doi:10.1016/0021-9681(79)90012-2. PMID 447779. 
  16. ↑ N.L. Kerr (1998). "HARKing: Hypothesizing After the Results are Known". Personality and Social Psychology Review 2 (3): 196–217. doi:10.1207/s15327957pspr0203_4. PMID 15647155. https://www2.psych.ubc.ca/~schaller/528Readings/Kerr1998.pdf. 
  17. ↑ Flore P. C.; Wicherts J. M. (2015). "Does stereotype threat influence performance of girls in stereotyped domains? A meta-analysis". J Sch Psychol 53 (1): 25–44. doi:10.1016/j.jsp.2014.10.002. PMID 25636259. 
  18. ↑ Dickersin, K.; Min, Y.I. (1993). "NIH clinical trials and publication bias". Online J Curr Clin Trials Doc No 50: [4967 words; 53 paragraphs]. ISSN 1059-2725. PMID 8306005. https://www.researchgate.net/publication/14893304. 
  19. ↑ "Fate of biomedical research protocols and publication bias in France: retrospective cohort study". BMJ 331 (7507): 19–22. 2005. doi:10.1136/bmj.38488.385995.8f. PMID 15967761. 
  20. ↑ "Extent of publication bias in different categories of research cohorts: a meta-analysis of empirical studies". BMC Med Res Methodol 9: 79. 2009. doi:10.1186/1471-2288-9-79. PMID 19941636. 
  21. ↑ "Identifying outcome reporting bias in randomised trials on PubMed: review of publications and survey of authors". BMJ 330 (7494): 753. 2005. doi:10.1136/bmj.38356.424606.8f. PMID 15681569. 
  22. ↑ "Timing and completeness of trial results posted at ClinicalTrials.gov and published in journals". PLOS Med 10 (12): e1001566. 2013. doi:10.1371/journal.pmed.1001566. PMID 24311990. 
  23. ↑ 23.0 23.1 Kicinski, M; Springate, D. A.; Kontopantelis, E (2015). "Publication bias in meta-analyses from the Cochrane Database of Systematic Reviews". Statistics in Medicine 34 (20): 2781–93. doi:10.1002/sim.6525. PMID 25988604. 
  24. ↑ Kicinski M (2013). "Publication bias in recent meta-analyses". PLOS ONE 8 (11): e81823. doi:10.1371/journal.pone.0081823. PMID 24363797. Bibcode: 2013PLoSO...881823K. 
  25. ↑ Nakagawa, Shinichi; Santos, Eduardo S. A. (2012-09-01). "Methodological issues and advances in biological meta-analysis" (in en). Evolutionary Ecology 26 (5): 1253–1274. doi:10.1007/s10682-012-9555-5. ISSN 1573-8477. https://doi.org/10.1007/s10682-012-9555-5. 
  26. ↑ 26.0 26.1 Nakagawa, Shinichi; Lagisz, Malgorzata; Jennions, Michael D.; Koricheva, Julia; Noble, Daniel W. A.; Parker, Timothy H.; Sánchez-Tójar, Alfredo; Yang, Yefeng et al. (January 2022). "Methods for testing publication bias in ecological and evolutionary meta-analyses" (in en). Methods in Ecology and Evolution 13 (1): 4–21. doi:10.1111/2041-210X.13724. ISSN 2041-210X. https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13724. 
  27. ↑ Vickers, Andrew; Goyal, Niraj; Harland, Robert; Rees, Rebecca (1998). "Do Certain Countries Produce Only Positive Results? A Systematic Review of Controlled Trials". Controlled Clinical Trials 19 (2): 159–166. doi:10.1016/S0197-2456(97)00150-5. 
  28. ↑ Nilsonne G. (2023). "Figure: Publication bias". ResearchEquals. doi:10.53962/w0d6-9kwa. 
  29. ↑ 29.0 29.1 Debray, Thomas P.A.; Moons, Karel G.M.; Riley, Richard D. (2018). "Detecting small-study effects and funnel plot asymmetry in meta-analysis of survival data: a comparison of new and existing tests" (in en). Research Synthesis Methods 9 (1): 41–50. doi:10.1002/jrsm.1266. ISSN 1759-2887. PMID 28975717. 
  30. ↑ Light, Richard J.; Pillemer, David B. (1984). Summing Up: The Science of Reviewing Research. Cambridge, Mass.: Harvard University Press. doi:10.2307/j.ctvk12px9. ISBN 9780674854307. OCLC 1036880624. https://archive.org/details/summingupscience00ligh. 
  31. ↑ Jin, Zhi-Chao; Zhou, Xiao-Hua; He, Jia (2015-01-30). "Statistical methods for dealing with publication bias in meta-analysis" (in en). Statistics in Medicine 34 (2): 343–360. doi:10.1002/sim.6342. ISSN 1097-0258. PMID 25363575. 
  32. ↑ Rücker, Gerta; Carpenter, James R.; Schwarzer, Guido (2011-03-01). "Detecting and adjusting for small-study effects in meta-analysis" (in en). Biometrical Journal 53 (2): 351–368. doi:10.1002/bimj.201000151. ISSN 1521-4036. PMID 21374698. 
  33. ↑ Egger, M.; Smith, G. D.; Schneider, M.; Minder, C. (1997-09-13). "Bias in meta-analysis detected by a simple, graphical test" (in en). BMJ 315 (7109): 629–634. doi:10.1136/bmj.315.7109.629. ISSN 0959-8138. PMID 9310563. 
  34. ↑ Silliman N (1997). "Hierarchical selection models with applications in meta-analysis". Journal of the American Statistical Association 92 (439): 926–936. doi:10.1080/01621459.1997.10474047. 
  35. ↑ "Estimating effect size under publication bias: small sample properties and robustness of a random effects selection model". Journal of Educational and Behavioral Statistics 21 (4): 299–332. 1996. doi:10.3102/10769986021004299. 
  36. ↑ McShane, Blakeley B.; Böckenholt, Ulf; Hansen, Karsten T. (2016-09-29). "Adjusting for Publication Bias in Meta-Analysis" (in en). Perspectives on Psychological Science 11 (5): 730–749. doi:10.1177/1745691616662243. PMID 27694467. 
  37. ↑ "Modelling publication bias in meta-analysis: a review". Stat Methods Med Res 9 (5): 421–445. 2000. doi:10.1191/096228000701555244. 
  38. ↑ Kicinski, M (2014). "How does under-reporting of negative and inconclusive results affect the false-positive rate in meta-analysis? A simulation study". BMJ Open 4 (8): e004831. doi:10.1136/bmjopen-2014-004831. PMID 25168036. 
  39. ↑ Yang, Yefeng; Sánchez-Tójar, Alfredo; O’Dea, Rose E.; Noble, Daniel W. A.; Koricheva, Julia; Jennions, Michael D.; Parker, Timothy H.; Lagisz, Malgorzata et al. (2023-04-03). "Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology". BMC Biology 21 (1): 71. doi:10.1186/s12915-022-01485-y. ISSN 1741-7007. PMID 37013585. 
  40. ↑ Goldacre, Ben (June 2012). What doctors don't know about the drugs they prescribe (Speech). TEDMED 2012. Retrieved 2020-02-03.
  41. ↑ Wilmshurst, Peter (2007). "Dishonesty in Medical Research". Medico-Legal Journal 75 (1): 3–12. doi:10.1258/rsmmlj.75.1.3. PMID 17506338. https://www.semanticscholar.org/paper/f8a05504a870d927eebcfaae5b1fa6e663a092df. 
  42. ↑ Orlitzky, Marc (2011). "Institutional Logics in the Study of Organizations: The Social Construction of the Relationship between Corporate Social and Financial Performance". Business Ethics Quarterly 21 (3): 409–444. doi:10.5840/beq201121325. http://marcorlitzky.webs.com/Papers/Orlitzky2011beq_preprint.pdf. 
  43. ↑ Goldacre, Ben (23 April 2011). "Backwards step on looking into the future". The Guardian. https://www.theguardian.com/commentisfree/2011/apr/23/ben-goldacre-bad-science. 
  44. ↑ Zhenglun Pan, Thomas A. Trikalinos, Fotini K. Kavvoura, Joseph Lau, John P.A. Ioannidis (2005). "Local literature bias in genetic epidemiology: An empirical evaluation of the Chinese literature". PLOS Medicine 2 (12): e334. doi:10.1371/journal.pmed.0020334. PMID 16285839. 
  45. ↑ Ling Tang Jin (2005). "Selection Bias in Meta-Analyses of Gene-Disease Associations". PLOS Medicine 2 (12): e409. doi:10.1371/journal.pmed.0020409. PMID 16363911. 
  46. ↑ 46.0 46.1 Ioannidis J (2005). "Why most published research findings are false". PLOS Med 2 (8): e124. doi:10.1371/journal.pmed.0020124. PMID 16060722. 
  47. ↑ Wacholder, S.; Chanock, S; Garcia-Closas, M; El Ghormli, L; Rothman, N (March 2004). "Assessing the Probability That a Positive Report is False: An Approach for Molecular Epidemiology Studies". JNCI 96 (6): 434–42. doi:10.1093/jnci/djh075. PMID 15026468. 
  48. ↑ Vedantam, Shankar (2004-09-09). "Journals Insist Drug Manufacturers Register All Trials" (in en-US). Washington Post. https://www.washingtonpost.com/archive/politics/2004/09/09/journals-insist-drug-manufacturers-register-all-trials/37be9ce1-23fd-4b07-943c-73336c5375a1/. 
  49. ↑ "Instructions for Trials authors — Study protocol". 2009-02-15. http://www.trialsjournal.com/info/instructions/?txt_jou_id=10096&txt_mst_id=61789. 
  50. ↑ Dickersin, K.; Chalmers, I. (2011). "Recognizing, investigating and dealing with incomplete and biased reporting of clinical research: from Francis Bacon to the WHO". J R Soc Med 104 (12): 532–538. doi:10.1258/jrsm.2011.11k042. PMID 22179297. 

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