Biology:Deferrisoma

From HandWiki

Deferrisoma is a genus of bacteria from the phylum Thermodesulfobacteriota.[1][2] It is the only described member of the family Deferrisomataceae, order Deferrisomatales, and class Deferrisomatia. Known Deferrisoma species are thermophilic iron reducers that live on deep-sea and shallow hydrothermal vents.[3][4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[5]

16S rRNA based LTP_10_2024[6][7][8] 120 marker proteins based GTDB 09-RS220[9][10][11]
Deferrisoma

D. camini Slobodkina et al. 2012

D. palaeochoriensePerez-Rodriguez et al. 2016

Deferrisoma

D. camini

References

  1. 1.0 1.1 A.C. Parte. "Deferrisoma". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/deferrisoma. 
  2. Deferrisoma. https://www.uniprot.org/taxonomy/1125862. 
  3. Slobodkina, G. B.; Reysenbach, A.-L.; Panteleeva, A. N.; Kostrikina, N. A.; Wagner, I. D.; Bonch-Osmolovskaya, E. A.; Slobodkin, A. I. (2012-10-01). "Deferrisoma camini gen. nov., sp. nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria" (in en). International Journal of Systematic and Evolutionary Microbiology 62 (Pt_10): 2463–2468. doi:10.1099/ijs.0.038372-0. ISSN 1466-5026. https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.038372-0. 
  4. Pérez-Rodríguez, Ileana; Rawls, Matthew; Coykendall, D. Katharine; Foustoukos, Dionysis I. (2016-02-01). "Deferrisoma palaeochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea" (in en). International Journal of Systematic and Evolutionary Microbiology 66 (2): 830–836. doi:10.1099/ijsem.0.000798. ISSN 1466-5026. https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000798. 
  5. C.L. Schoch. "Deferrisoma". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=1125862&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  6. "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  7. "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  8. "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  9. "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  10. "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  11. "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

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