Biology:Polyphosphate-accumulating organisms

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Cluster of PAOs

Polyphosphate-accumulating organisms (PAOs) are a group of microorganisms that, under certain conditions, facilitate the removal of large amounts of phosphorus from their environments. The most studied example of this phenomenon is in polyphosphate-accumulating bacteria (PAB) found in a type of wastewater processing known as enhanced biological phosphorus removal (EBPR), however phosphate hyperaccumulation has been found to occur in other conditions such as soil and marine environments, as well as in non-bacterial organisms such as fungi and algae.[1] PAOs accomplish this removal of phosphate by accumulating it within their cells as polyphosphate. PAOs are by no means the only microbes that can accumulate phosphate within their cells and in fact, the production of polyphosphate is a widespread ability among microbes. However, PAOs have many characteristics that other organisms that accumulate polyphosphate do not have that make them amenable to use in wastewater treatment. Specifically, in the case of classical PAOs, is the ability to consume simple carbon compounds (energy source) without the presence of an external electron acceptor (such as nitrate or oxygen) by generating energy from internally stored polyphosphate and glycogen. Many bacteria cannot consume carbon without an energetically favorable electron acceptor and therefore PAOs gain a selective advantage within the mixed microbial community present in the activated sludge.[2] Therefore, wastewater treatment plants that operate for enhanced biological phosphorus removal have an anaerobic tank (where there is no nitrate or oxygen present as external electron acceptor) prior to the other tanks to give PAOs preferential access to the simple carbon compounds in the wastewater that is influent to the plant.

Metabolisms

Classical (Canonical) PAO Metabolism

The classical or "canonical" behavior of PAOs is considered to be the release of phosphate (as orthophosphate) to the environment and transformation of intracellular polyphosphate reserves into polyhydroxyalkanoates (PHA) from volatile fatty acids (VFAs) and glycogen during anoxic conditions.[3] This is followed by the consumption of the PHA/VFAs and uptake of environmental orthophosphate during oxic conditions to regenerate polyphosphate reserves within the cell.[3]

Non-Canonical (or "Fermentative) PAO Metabolism

Some PAOs have been found to have alternative methods to accumulating polyphosphate, particularly to do with not storing PHA or glycogen.[4][5] This is generally believed to be seen more often in extracellular environments high in organic compounds, thus containing fermentable substrates like amino acids and sugars.[6] However, the exact mechanisms of these microbes to accumulate and use polyphosphate are not well understood.[5]

Known Bacterial PAOs

Candidatus Phosphoribacter (previously referred to as Tetrasphaera prior to 2022)

Candidatus Phosphoribacter is a bacterial genus that has been found to be the dominant PAO associated with wastewater treatment worldwide, and has been found to often participate more in the biological removal of phosphorus than Candidatus Accumulibacter, contrary to previous understandings.[4][7][5] This bacteria has been found to be a non-canonical (or fermentative/"fPAO") PAO, and universally lack the genetic potential to store PHA.[4][8] This genus was largely found to be capable of producing the fermentation products acetate, lactate, alanine, and succinate.[8][9] Additionally, it is suggested that the amino acids lysine, arginine, histidine, leucine, isoleucine, valine and phenylalanine may replace the canonical purpose of PHA as an energy substrate during oxic conditions, based on genomic potential and similarity to behavior of other microbial metabolisms.[4] Alternatively, the compound cyanophycin may used as an energy substrate due to the ubiquity of cyanophycin-metabolizing enzymes encoded in the species.[4]

Candidatus Accumlibacter phosphatis

Candidatus Accumulibacter phosphatis is one of the most well-studied PAOs, and is responsible for the development of the classical PAO metabolic model which Ca. Phosphoribacter later contradicted.[10] Formerly considered the most important PAO in waste treatment, the bacteria is highly abundant in wastewater treatment plants globally.[5][11] It can consume a range of carbon compounds, such as acetate and propionate, under anaerobic conditions and store these compounds as polyhydroxyalkanoates (PHA) which it consumes as a carbon and energy source for growth using oxygen or nitrate as electron acceptor. Historically, the hyperaccumulation of phosphate by Ca. Accumulibacter was seen as a stress response, but currently it is suggested that this behavior may play an ecological role.[12] In combination with Ca. Phosphoribacter, these two PAOs are considered to account for 24-70% of phosphorus removed from wastewater during treatment processing.[7]

Candidatus dechloromonas

Candidatus Dechloromonas species phosphoritropha and phosphorivorans are PAOs with classical metabolism genotype.[13] Dechloromonas has been found in high abundances in wastewater treatment plants across the world.[14][15][16][5] The two species described here, Dechloromonas phosphoritropha and phosphorivans, are the two most abundant species in waste treatment within the genus.[17]

Candidatus accumulimonas (previously referred to as Candidatus Halomonas phosphatis)

Candidatus accumulimonas is a species of PAO with classical metabolism phenotype.[18][19]

Microlunatis phosphovorus

Microlunatis phosphovorus is a species of PAO with likely non-canonical PAO metabolism, however exact mechanisms have not been determined.[20][21][22] Belonging to the same phylum as Ca. phosphoribacter, these two actinobacterial organisms exhibit similar metabolisms, however M. phosphovorus has been suggested to hyperaccumulate over ten times the amount of polyphosphate per cell mass dry weight compared to Ca. phosphoribacter or proteobacterial PAOs.[21]

Pseudomonas spp.

Some unnamed species of the Pseudomonas genus have been observed to exhibit PAO phenotypes.[23]

Paracoccus denitrificans

Paracoccus denitrificans has been observed to exhibit a non-canonical PAO phenotype.[23][24]

Quatrionicoccus australiensis

Quatrionicoccus australiensis is a bacteria isolated from activated sludge which has been found to accumulate polyphosphate and PHA, thus likely having a classical PAO phenotype.[25][1]

Malikia granosa

Malikia granosa is a bacteria isolated from activated sludge which has been found to accumulate polyphosphate and PHA, thus likely having a classical PAO phenotype.[26]

Lampropedia spp.

Lampropedia species, isolated from EBPR activated sludge, have been found to accumulate polyphosphate and PHA, though not to extreme degrees.[27]

Candidatus Microthrix

Candidatus Microthrix, identified in more than one EBPR activated sludge source, is a filamentous bacteria suspected to be responsible for phosphate removal during the bulking phase of EBPR, where other PAOs decrease in abundance.[28]

Gemmatimonas aurantiaca

Gemmatimonas aurantiaca is a bacteria isolated from activated sludge that has been observed to accumulate polyphosphate granules.[29]

References

  1. ↑ 1.0 1.1 Akbari, Ali; Wang, ZiJian; He, Peisheng; Wang, Dongqi; Lee, Jangho; Han, Il; Li, Guangyu; Gu, April Z. (January 2021). "Unrevealed roles of polyphosphate‐accumulating microorganisms" (in en). Microbial Biotechnology 14 (1): 82–87. doi:10.1111/1751-7915.13730. ISSN 1751-7915. PMID 33404187. 
  2. ↑ Oehmen, Adrian; Lemos, Paulo C.; Carvalho, Gilda; Yuan, Zhiguo; Keller, Jürg; Blackall, Linda L.; Reis, Maria A. M. (2007-06-01). "Advances in enhanced biological phosphorus removal: From micro to macro scale". Water Research 41 (11): 2271–2300. doi:10.1016/j.watres.2007.02.030. ISSN 0043-1354. https://www.sciencedirect.com/science/article/pii/S0043135407001091. 
  3. ↑ 3.0 3.1 Akram, Fatima; Aqeel, Amna; Ahmed, Zeeshan; Zafar, Javeria; Haq, Ikram ul (2022-01-01), Dar, Gowhar Hamid; Bhat, Rouf Ahmad; Qadri, Humaira et al., eds., "Chapter 8 - Role of polyphosphate accumulating organisms in enhanced biological phosphorous removal" (in en), Microbial Consortium and Biotransformation for Pollution Decontamination, Advances in Environmental Pollution Research (Elsevier): pp. 151–179, ISBN 978-0-323-91893-0, https://www.sciencedirect.com/science/article/pii/B9780323918930000031, retrieved 2023-07-07 
  4. ↑ 4.0 4.1 4.2 4.3 4.4 Singleton, C. M.; Petriglieri, F.; Wasmund, K.; Nierychlo, M.; Kondrotaite, Z.; Petersen, J. F.; Peces, M.; Dueholm, M. S. et al. (June 2022). "The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide". The ISME Journal 16 (6): 1605–1616. doi:10.1038/s41396-022-01212-z. ISSN 1751-7370. PMID 35217776. 
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Nielsen, Per Halkjær; McIlroy, Simon J.; Albertsen, Mads; Nierychlo, Marta (June 2019). "Re-evaluating the microbiology of the enhanced biological phosphorus removal process". Current Opinion in Biotechnology 57: 111–118. doi:10.1016/j.copbio.2019.03.008. ISSN 1879-0429. PMID 30959426. 
  6. ↑ Nguyen, Hien Thi Thu; Kristiansen, Rikke; Vestergaard, Mette; Wimmer, Reinhard; Nielsen, Per Halkjær (2015-07-15). "Intracellular Accumulation of Glycine in Polyphosphate-Accumulating Organisms in Activated Sludge, a Novel Storage Mechanism under Dynamic Anaerobic-Aerobic Conditions". Applied and Environmental Microbiology 81 (14): 4809–4818. doi:10.1128/aem.01012-15. ISSN 0099-2240. PMID 25956769. PMC 4551194. http://dx.doi.org/10.1128/aem.01012-15. 
  7. ↑ 7.0 7.1 Fernando, Eustace Y.; McIlroy, Simon Jon; Nierychlo, Marta; Herbst, Florian-Alexander; Petriglieri, Francesca; Schmid, Markus C.; Wagner, Michael; Nielsen, Jeppe Lund et al. (August 2019). "Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH". The ISME Journal 13 (8): 1933–1946. doi:10.1038/s41396-019-0399-7. ISSN 1751-7370. PMID 30894691. 
  8. ↑ 8.0 8.1 Otieno, Jeremiah; Kowal, Przemysław; Mąkinia, Jacek (2022-10-28). "The Occurrence and Role of Tetrasphaera in Enhanced Biological Phosphorus Removal Systems". Water 14 (21): 3428. doi:10.3390/w14213428. ISSN 2073-4441. 
  9. ↑ Kristiansen, Rikke; Nguyen, Hien Thi Thu; Saunders, Aaron Marc; Nielsen, Jeppe Lund; Wimmer, Reinhard; Le, Vang Quy; McIlroy, Simon Jon; Petrovski, Steve et al. (March 2013). "A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal". The ISME Journal 7 (3): 543–554. doi:10.1038/ismej.2012.136. ISSN 1751-7370. PMID 23178666. 
  10. ↑ He, Shaomei; McMahon, Katherine D. (2011-02-21). "Microbiology of CandidatusAccumulibacter' in activated sludge". Microbial Biotechnology '4 (5): 603–619. doi:10.1111/j.1751-7915.2011.00248.x. ISSN 1751-7915. PMID 21338476. PMC 3819010. http://dx.doi.org/10.1111/j.1751-7915.2011.00248.x. 
  11. ↑ Onnis‐Hayden, Annalisa; Srinivasan, Varun; Tooker, Nicholas B.; Li, Guangyu; Wang, Dongqi; Barnard, James L.; Bott, Charles; Dombrowski, Paul et al. (March 2020). "Survey of full‐scale sidestream enhanced biological phosphorus removal (S2EBPR) systems and comparison with conventional EBPRs in North America: Process stability, kinetics, and microbial populations" (in en). Water Environment Research 92 (3): 403–417. doi:10.1002/wer.1198. ISSN 1061-4303. PMID 31402530. https://onlinelibrary.wiley.com/doi/10.1002/wer.1198. 
  12. ↑ da Silva, Leonor Guedes; Gamez, Karel Olavarria; Gomes, Joana Castro; Akkermans, Kasper; Welles, Laurens; Abbas, Ben; van Loosdrecht, Mark C.M.; Wahl, Sebastian Aljoscha (2018-11-01). Revealing metabolic flexibility ofCandidatusAccumulibacter phosphatis through redox cofactor analysis and metabolic network modeling. doi:10.1101/458331. http://dx.doi.org/10.1101/458331. Retrieved 2023-07-07. 
  13. ↑ "Midas Field Guide". https://www.midasfieldguide.org/guide/fieldguide/genus/dechloromonas. 
  14. ↑ Terashima, Mia; Yama, Ayano; Sato, Megumi; Yumoto, Isao; Kamagata, Yoichi; Kato, Souichiro (2016). "Culture-Dependent and -Independent Identification of Polyphosphate-Accumulating <i>Dechloromonas</i> spp. Predominating in a Full-Scale Oxidation Ditch Wastewater Treatment Plant". Microbes and Environments 31 (4): 449–455. doi:10.1264/jsme2.me16097. ISSN 1342-6311. PMID 27867159. PMC 5158118. http://dx.doi.org/10.1264/jsme2.me16097. 
  15. ↑ Wang, Baogui; Jiao, Erlong; Guo, Yu; Zhang, Lifang; Meng, Qingan; Zeng, Wei; Peng, Yongzhen (2020-07-02). "Investigation of the polyphosphate-accumulating organism population in the full-scale simultaneous chemical phosphorus removal system". Environmental Science and Pollution Research 27 (30): 37877–37886. doi:10.1007/s11356-020-09912-9. ISSN 0944-1344. PMID 32617817. http://dx.doi.org/10.1007/s11356-020-09912-9. 
  16. ↑ Stokholm-Bjerregaard, Mikkel; McIlroy, Simon J.; Nierychlo, Marta; Karst, Søren M.; Albertsen, Mads; Nielsen, Per H. (2017-04-27). "A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems". Frontiers in Microbiology 8: 718. doi:10.3389/fmicb.2017.00718. ISSN 1664-302X. PMID 28496434. 
  17. ↑ Petriglieri, Francesca; Singleton, Caitlin; Peces, Miriam; Petersen, Jette F.; Nierychlo, Marta; Nielsen, Per H. (December 2021). ""Candidatus Dechloromonas phosphoritropha" and "Ca. D. phosphorivorans", novel polyphosphate accumulating organisms abundant in wastewater treatment systems" (in en). The ISME Journal 15 (12): 3605–3614. doi:10.1038/s41396-021-01029-2. ISSN 1751-7370. PMID 34155336. 
  18. ↑ Nguyen, Hien Thi Thu; Nielsen, Jeppe Lund; Nielsen, Per Halkjaer (October 2012). "'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants: Polyphosphate-accumulating uncultured Halomonas" (in en). Environmental Microbiology 14 (10): 2826–2837. doi:10.1111/j.1462-2920.2012.02826.x. PMID 22827168. https://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2012.02826.x. 
  19. ↑ "Midas Field Guide". https://www.midasfieldguide.org/guide/fieldguide/genus/halomonas. 
  20. ↑ Nakamura, K.; Hiraishi, A.; Yoshimi, Y.; Kawaharasaki, M.; Masuda, K.; Kamagata, Y. (January 1995). "Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge". International Journal of Systematic Bacteriology 45 (1): 17–22. doi:10.1099/00207713-45-1-17. ISSN 0020-7713. PMID 7857797. 
  21. ↑ 21.0 21.1 Kawakoshi, A.; Nakazawa, H.; Fukada, J.; Sasagawa, M.; Katano, Y.; Nakamura, S.; Hosoyama, A.; Sasaki, H. et al. (2012-08-23). "Deciphering the Genome of Polyphosphate Accumulating Actinobacterium Microlunatus phosphovorus". DNA Research 19 (5): 383–394. doi:10.1093/dnares/dss020. ISSN 1340-2838. PMID 22923697. PMC 3473371. http://dx.doi.org/10.1093/dnares/dss020. 
  22. ↑ Zhong, Chuanqing; Zhang, Peipei; Liu, Cheng; Liu, Meng; Chen, Wenbing; Fu, Jiafang; Qi, Xiaoyu; Cao, Guangxiang (2019). "The PolS-PolR Two-Component System Regulates Genes Involved in Poly-P Metabolism and Phosphate Transport in Microlunatus phosphovorus". Frontiers in Microbiology 10: 2127. doi:10.3389/fmicb.2019.02127. ISSN 1664-302X. PMID 31572333. 
  23. ↑ 23.0 23.1 Günther, S.; Trutnau, M.; Kleinsteuber, S.; Hause, G.; Bley, T.; Röske, I.; Harms, H.; Müller, S. (April 2009). "Dynamics of Polyphosphate-Accumulating Bacteria in Wastewater Treatment Plant Microbial Communities Detected via DAPI (4′,6′-Diamidino-2-Phenylindole) and Tetracycline Labeling". Applied and Environmental Microbiology 75 (7): 2111–2121. doi:10.1128/aem.01540-08. ISSN 0099-2240. PMID 19181836. PMC 2663203. http://dx.doi.org/10.1128/aem.01540-08. 
  24. ↑ Barak, Yoram; van Rijn, Jaap (March 2000). "Atypical Polyphosphate Accumulation by the Denitrifying Bacterium Paracoccus denitrificans". Applied and Environmental Microbiology 66 (3): 1209–1212. doi:10.1128/aem.66.3.1209-1212.2000. ISSN 0099-2240. PMID 10698794. PMC 91965. http://dx.doi.org/10.1128/aem.66.3.1209-1212.2000. 
  25. ↑ Maszenan, A M; Seviour, R J; Patel, B K C; Schumann, P (2002). "Quadricoccus australiensis gen. nov., sp. nov., a beta-proteobacterium from activated sludge biomass.". International Journal of Systematic and Evolutionary Microbiology 52 (1): 223–228. doi:10.1099/00207713-52-1-223. ISSN 1466-5034. 
  26. ↑ Spring, Stefan; Wagner, Michael; Schumann, Peter; Kämpfer, Peter (March 2005). "Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate-accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov". International Journal of Systematic and Evolutionary Microbiology 55 (Pt 2): 621–629. doi:10.1099/ijs.0.63356-0. ISSN 1466-5026. PMID 15774634. 
  27. ↑ Stante, L.; Cellamare, C. M.; Malaspina, F.; Bortone, G.; Tilche, A. (1997-06-01). "Biological phosphorus removal by pure culture of Lampropedia spp." (in en). Water Research 31 (6): 1317–1324. doi:10.1016/S0043-1354(96)00351-X. ISSN 0043-1354. https://www.sciencedirect.com/science/article/pii/S004313549600351X. 
  28. ↑ Wang, Juan; Qi, Rong; Liu, Miaomiao; Li, Qian; Bao, Haipeng; Li, Yaming; Wang, Shen; Tandoi, Valter et al. (2014). "The potential role of 'Candidatus Microthrix parvicella' in phosphorus removal during sludge bulking in two full-scale enhanced biological phosphorus removal plants". Water Science and Technology: A Journal of the International Association on Water Pollution Research 70 (2): 367–375. doi:10.2166/wst.2014.216. ISSN 0273-1223. PMID 25051486. 
  29. ↑ Zhang, Hui; Sekiguchi, Yuji; Hanada, Satoshi; Hugenholtz, Philip; Kim, Hongik; Kamagata, Yoichi; Nakamura, Kazunori (2003). "Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.". International Journal of Systematic and Evolutionary Microbiology 53 (4): 1155–1163. doi:10.1099/ijs.0.02520-0. ISSN 1466-5034. 



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