Biology:Reductive dechlorination

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Short description: Chemical reaction which breaks carbon-chlorine bonds via a reductant

In organochlorine chemistry, reductive dechlorination describes any chemical reaction which cleaves the covalent bond between carbon and chlorine via reductants, to release chloride ions. Many modalities have been implemented, depending on the application. Reductive dechlorination is often applied to remediation of chlorinated pesticides or dry cleaning solvents. It is also used occasionally in the synthesis of organic compounds, e.g. as pharmaceuticals.

Chemical

Dechlorination is a well-researched reaction in organic synthesis, although it is not often used. Usually stoichiometric amounts of dechlorinating agent are required. In one classic application, the Ullmann reaction, chloroarenes are coupled to biphenyl]]s. For example, the activated substrate 2-chloronitrobenzene is converted into 2,2'-dinitrobiphenyl with a copper - bronze alloy.[1][2]

Ullmann reaction.

Zerovalent iron effects similar reactions. Organophosphorus(III) compounds effect gentle dechlorinations. The products are alkenes and phosphorus(V).[3]

  • Alkaline earth metals and zinc are used for more difficult dechlorinations. The side product is zinc chloride.[4]

Biological

Vicinal reduction involves the removal of two halogen atoms that are adjacent on the same alkane or alkene, leading to the formation of an additional carbon-carbon bond.[5]

Biological reductive dechlorination is often effected by certain species of bacteria. Sometimes the bacterial species are highly specialized for organochlorine respiration and even a particular electron donor, as in the case of Dehalococcoides and Dehalobacter. In other examples, such as Anaeromyxobacter, bacteria have been isolated that are capable of using a variety of electron donors and acceptors, with a subset of possible electron acceptors being organochlorines.[6] These reactions depend on a molecule which tends to be very aggressively sought after by some microbes, vitamin B12.[7]

Bioremediation using reductive dechlorination

Reductive dechlorination of chlorinated organic molecules is relevant to bioremediation of polluted groundwater.[8][9] One example[10] is the organochloride respiration of the dry-cleaning solvent, tetrachloroethylene, and the engine degreasing solvent trichloroethylene by anaerobic bacteria, often members of the candidate genera Dehalococcoides. Bioremediation of these chloroethenes can occur when other microorganisms at the contaminated site provide H2 as a natural byproduct of various fermentation reactions. The dechlorinating bacteria use this H2 as their electron donor, ultimately replacing chlorine atoms in the chloroethenes with hydrogen atoms via hydrogenolytic reductive dechlorination. This process can proceed in the soil provided the availability of organic electron donors and the appropriate strains of Dehalococcoides. Trichloroethylene is dechlorinated via dichloroethene and vinyl chloride to ethylene.[11]

A chloroform-degrading reductive dehalogenase enzyme has been reported in a Dehalobacter member. The chloroform reductive dehalogenase, termed TmrA, was found to be transcriptional up-regulated in response to chloroform respiration[12] and the enzyme can be obtained both in native[13] and recombinant forms.[14]

Reductive dechlorination has been investigated for bioremediation of polychlorinated biphenyls (PCB) and chlorofluorocarbons (CFC). The reductive dechlorination of PCBs is performed by anaerobic microorganisms that utilize the PCB as an electron sink. The result of this is the reduction of the "meta" site, followed by the "para" site, and finally the "ortho" site, leading to a dechlorinated product.[15][16][17] In the Hudson River, microorganisms effect dechlorination over the course of weeks. The resulting monochlorobiphenyls and dichlorobiphenyls are less toxic and more easily degradable by aerobic organisms compared to their chlorinated counterparts.[17] The prominent drawback that has prevented the widespread use of reductive dechlorination for PCB detoxification and has decreased its feasibility is the issue of the slower than desired dechlorination rates.[16] It has been suggested that bioaugmentation with DF-1 can lead to enhanced reductive dechlorination rates of PCBs through stimulation of dechlorination. Additionally, high inorganic carbon levels do not affect dechlorination rates in low PCB concentration environments.[15]

The reductive dechlorination applies to CFCs.[18] Reductive dechlorination of CFCs including CFC-11, CFC-113, chlorotrifluoroethene, CFC-12, HCFC-141b, and tetrachloroethene occur through hydrogenolysis. Reduction rates of CFC mirror theoretical rates calculated based on the Marcus theory of electron transfer rate.[19]

Electrochemical

The electrochemical reduction of chlorinated chemicals such as chlorinated hydrocarbons and chlorofluorocarbons can be carried out by electrolysis in appropriate solvents, such as mixtures of water and alcohol. Some of the key components of an electrolytic cell are types of electrodes, electrolyte mediums, and use of mediators. The cathode transfers electrons to the molecule, which decomposes to produce the corresponding hydrocarbon (hydrogen atoms substitute the original chlorine atoms) and free chloride ions. For instance, the reductive dechlorination of CFCs is complete and produces several hydrofluorocarbons (HFC) plus chloride.

Hydrodechlorination (HDC) is a type of reductive dechlorination that is useful due to its high reaction rate. It uses H2 as the reducing agent over a range of potential electrode reactors and catalysts.[20] Amongst the types of catalysts studied such as precious metals (platinum, palladium, rhodium), transition metals (niobium and molybdenum), and metal oxides, a preference for precious metals overrides the others. As an example, palladium often adopts a lattice formation which can easily embed hydrogen gas making it more accessible to be readily oxidized.[21] However a common issue for HDC is catalyst deactivation and regeneration. As catalysts are depleted, chlorine poisoning on surfaces can sometimes be observed, and on rare occasions, metal sintering and leaching occurs as a result.[22]

Electrochemical reduction can be performed at ambient pressure and temperature.[23] This will not disrupt microbial environments or raise extra cost for remediation. The process of dechlorination can be highly controlled to avoid toxic chlorinated intermediates and byproducts such as dioxins from incineration. Trichloroethylene and perchloroethylene are common targets of treatment which are directly converted to environmentally benign products. Chlorinated alkenes and alkanes are converted to hydrogen chloride which is then neutralized with a base.[22] However, even though there are many potential benefits to adopting this method, research have mainly been conducted in a laboratory setting with a few cases of field studies making it not yet well established.

References

  1. ↑ Reynold C. Fuson; E. A. Cleveland (1940). "2,2'-Dinitrobiphenyl". Org. Synth. 20: 45. doi:10.15227/orgsyn.020.0045. 
  2. ↑ Fanta, P.E. (1974). "The Ullmann Synthesis of Biaryls". Synthesis 1974: 9–21. doi:10.1055/s-1974-23219. PMID 21016995. 
  3. ↑ V. Mark (1966). "Perchlorofulvalene". Organic Syntheses 46: 93. doi:10.15227/orgsyn.046.0093. 
  4. ↑ Danheiser, Rick L.; Savariar, Selvaraj; Chad, Don D. (1990). "3-Butylcyclobutenone". Organic Syntheses 68: 32. doi:10.15227/orgsyn.068.0032. 
  5. ↑ Mohn, WW; Tiedje, JM (1992). "Microbial reductive dehalogenation". Microbiol Rev 56 (3): 482–507. doi:10.1128/mmbr.56.3.482-507.1992. PMID 1406492. 
  6. ↑ Smidt, H; de Vos, WM (2004). "Anaerobic microbial dehalogenation". Annu Rev Microbiol 58: 43–73. doi:10.1146/annurev.micro.58.030603.123600. PMID 15487929. 
  7. ↑ "The Secret to Degrading PCBs and Dioxins is in How Bacteria Breathe". 2014-10-19. https://motherboard.vice.com/en_us/article/with-help-from-bacteria-biochemists-learn-how-to-break-up-environmental-toxins. 
  8. ↑ Jugder, Bat-Erdene; Ertan, Haluk; Lee, Matthew; Manefield, Michael; Marquis, Christopher P. (2015-10-01). "Reductive Dehalogenases Come of Age in Biological Destruction of Organohalides" (in en). Trends in Biotechnology 33 (10): 595–610. doi:10.1016/j.tibtech.2015.07.004. ISSN 0167-7799. PMID 26409778. 
  9. ↑ Jugder, Bat-Erdene; Ertan, Haluk; Bohl, Susanne; Lee, Matthew; Marquis, Christopher P.; Manefield, Michael (2016). "Organohalide Respiring Bacteria and Reductive Dehalogenases: Key Tools in Organohalide Bioremediation" (in en). Frontiers in Microbiology 7: 249. doi:10.3389/fmicb.2016.00249. ISSN 1664-302X. PMID 26973626. 
  10. ↑ Kielhorn, JExpression error: Unrecognized word "etal". (2000). "still a cause for concern". Environ Health Perspect 108 (7): 579–88. doi:10.1289/ehp.00108579. PMID 10905993. 
  11. ↑ McCarty, PL (1997). "Breathing with chlorinated solvents". Science 276 (5318): 1521–2. doi:10.1126/science.276.5318.1521. PMID 9190688. 
  12. ↑ Jugder, Bat-Erdene; Ertan, Haluk; Wong, Yie Kuan; Braidy, Nady; Manefield, Michael; Marquis, Christopher P.; Lee, Matthew (2016-08-10). "Genomic, transcriptomic and proteomic analyses ofDehalobacterUNSWDHB in response to chloroform" (in en). Environmental Microbiology Reports 8 (5): 814–824. doi:10.1111/1758-2229.12444. ISSN 1758-2229. PMID 27452500. 
  13. ↑ Jugder, Bat-Erdene; Bohl, Susanne; Lebhar, Helene; Healey, Robert D.; Manefield, Mike; Marquis, Christopher P.; Lee, Matthew (2017-06-20). "A bacterial chloroform reductive dehalogenase: purification and biochemical characterization" (in en). Microbial Biotechnology 10 (6): 1640–1648. doi:10.1111/1751-7915.12745. ISSN 1751-7915. PMID 28631300. 
  14. ↑ Jugder, Bat-Erdene; Payne, Karl A. P.; Fisher, Karl; Bohl, Susanne; Lebhar, Helene; Manefield, Mike; Lee, Matthew; Leys, David et al. (2018-01-24). "Heterologous Production and Purification of a Functional Chloroform Reductive Dehalogenase" (in en). ACS Chemical Biology 13 (3): 548–552. doi:10.1021/acschembio.7b00846. ISSN 1554-8929. PMID 29363941. 
  15. ↑ 15.0 15.1 Payne, Rayford B.; May, Harold D.; Sowers, Kevin R. (2011-10-15). "Enhanced Reductive Dechlorination of Polychlorinated Biphenyl Impacted Sediment by Bioaugmentation with a Dehalorespiring Bacterium". Environmental Science & Technology 45 (20): 8772–8779. doi:10.1021/es201553c. ISSN 0013-936X. PMID 21902247. Bibcode: 2011EnST...45.8772P. 
  16. ↑ 16.0 16.1 Tiedje, James M.; Quensen, John F.; Chee-Sanford, Joann; Schimel, Joshua P.; Boyd, Stephen A. (1994). "Microbial reductive dechlorination of PCBs". Biodegradation 4 (4): 231–240. doi:10.1007/BF00695971. PMID 7764920. 
  17. ↑ 17.0 17.1 Quensen, J. F.; Tiedje, J. M.; Boyd, S. A. (4 November 1988). "Reductive Dechlorination of Polychlorinated Biphenyls by Anaerobic Microorganisms from Sediments". Science 242 (4879): 752–754. doi:10.1126/science.242.4879.752. PMID 17751997. Bibcode: 1988Sci...242..752Q. 
  18. ↑ Lovley, Derek R.; Woodward, Joan C. (1992-05-01). "Consumption of Freons CFC-11 and CFC-12 by anaerobic sediments and soils". Environmental Science & Technology 26 (5): 925–929. doi:10.1021/es00029a009. ISSN 0013-936X. Bibcode: 1992EnST...26..925L. 
  19. ↑ Balsiger, Christian; Holliger, Christof; Höhener, Patrick (2005). "Reductive dechlorination of chlorofluorocarbons and hydrochlorofluorocarbons in sewage sludge and aquifer sediment microcosms". Chemosphere 61 (3): 361–373. doi:10.1016/j.chemosphere.2005.02.087. PMID 16182853. Bibcode: 2005Chmsp..61..361B. 
  20. ↑ Hoke, Jeffrey B.; Gramiccioni, Gary A.; Balko, Edward N. (1992). "Catalytic hydrodechlorination of chlorophenols". Applied Catalysis B: Environmental 1 (4): 285–296. doi:10.1016/0926-3373(92)80054-4. 
  21. ↑ Cheng, I. Francis; Fernando, Quintus; Korte, Nic (1997-04-01). "Electrochemical Dechlorination of 4-Chlorophenol to Phenol". Environmental Science & Technology 31 (4): 1074–1078. doi:10.1021/es960602b. ISSN 0013-936X. Bibcode: 1997EnST...31.1074C. 
  22. ↑ 22.0 22.1 Ju, Xiumin (2005). "Reductive Dehalogenation of Gas-phase Trichloroethylene using Heterogeneous Catalytic and Electrochemical Methods". University of Arizona Campus Repository. http://arizona.openrepository.com/arizona/handle/10150/193594. 
  23. ↑ Chemical degradation methods for wastes and pollutants: environmental and industrial applications. Tarr, Matthew A.. New York: M. Dekker. 2003. ISBN 978-0-203-91255-3. OCLC 54061528. 



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