Biology:Sediminibacillus

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Sediminibacillus is a genus of bacteria from the family of Bacillaceae.[3][4][5][6][7] Sediminibacillus species are halophilic bacteria[7] and found in salty human stools[8] and marine sponges.[7] Sediminibacillus species are identified from Plakortis dariae sponge of the Saint Martin's island of the Bay of Bengal, Bangladesh.[7]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[9]

16S rRNA based LTP_10_2024[10][11][12] 120 marker proteins based GTDB 09-RS220[13][14][15]
Sediminibacillus
 

S. albus Wang, Xue & Ma 2009

 
 
 

S. terrae Wu et al. 2020

 
 

S. halophilus Carrasco et al. 2008

 
 
 
Sediminibacillus
 

"S. massiliensis" Senghor et al. 2017

 
 
 

S. albus Wang, Xue & Ma 2009

 
 
 

"Virgibacillus senegalensis"

 
 
 

S. terrae Wu et al. 2020

 
 
 

S. dalangtanensis Huang et al. 2022

 
 

S. halophilus Carrasco et al. 2008

 
 
 
 
 
 

See also

References

  1. ↑ Senghor, B; Khelaifia, S; Bassène, H; Seck, EH; Fournier, PE; Sokhna, C; Raoult, D; Lagier, JC (November 2017). "Gracilibacillus phocaeensis sp. nov., Sediminibacillus massiliensis sp. nov. and Virgibacillus ndiopensis sp. nov., three halophilic species isolated from salty human stools by culturomics.". New Microbes and New Infections 20: 51–54. doi:10.1016/j.nmni.2017.08.006. PMID 29062488. Template:Expression of Concern
  2. ↑ Senghor, Bruno; Bassène, Hubert; Khelaifia, Saber; Robert, Catherine; Fournier, Pierre-Edouard; Ruimy, Raymond; Sokhna, Cheikh; Raoult, Didier et al. (7 February 2018). "Sediminibacillus massiliensis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a stool sample of a young Senegalese man". Antonie van Leeuwenhoek 111 (7): 1225–1236. doi:10.1007/s10482-018-1032-x. PMID 29417358. 
  3. ↑ 3.0 3.1 A.C. Parte. "Sediminibacillus". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/sediminibacillus. 
  4. ↑ (in en) Sediminibacillus. https://www.uniprot.org/taxonomy/482460. 
  5. ↑ Parker, Charles Thomas; Wigley, Sarah; Garrity, George M; Taylor, Dorothea (2009). "Nomenclature Abstract for Sediminibacillus." (in en). The NamesforLife Abstracts. doi:10.1601/nm.13146. 
  6. ↑ Falkiewicz-Dulik, Michalina; Janda, Katarzyna; Wypych, George (2015) (in en). Handbook of Material Biodegradation, Biodeterioration, and Biostablization. Elsevier. ISBN 978-1-927885-02-4. 
  7. ↑ 7.0 7.1 7.2 7.3 Paul, Sulav Indra; Rahman, Md. Mahbubur; Salam, Mohammad Abdus; Khan, Md. Arifur Rahman; Islam, Md. Tofazzal (2021-12-15). "Identification of marine sponge-associated bacteria of the Saint Martin's island of the Bay of Bengal emphasizing on the prevention of motile Aeromonas septicemia in Labeo rohita" (in en). Aquaculture 545. doi:10.1016/j.aquaculture.2021.737156. ISSN 0044-8486. Bibcode: 2021Aquac.54537156P. https://www.sciencedirect.com/science/article/pii/S004484862100819X. 
  8. ↑ Senghor, B.; Khelaifia, S.; Bassène, H.; Seck, E. H.; Fournier, P. -E.; Sokhna, C.; Raoult, D.; Lagier, J. -C. (2017-11-01). "'Gracilibacillus phocaeensis' sp. nov., 'Sediminibacillus massiliensis' sp. nov. and 'Virgibacillus ndiopensis' sp. nov., three halophilic species isolated from salty human stools by culturomics" (in en). New Microbes and New Infections 20: 51–54. doi:10.1016/j.nmni.2017.08.006. ISSN 2052-2975. PMID 29062488. Template:Expression of Concern
  9. ↑ C.L. Schoch. "Sediminibacillus". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=482460&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock. 
  10. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  11. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  12. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  13. ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  14. ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  15. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

  • Carrasco, IJ; Márquez, MC; Xue, Y; Ma, Y; Cowan, DA; Jones, BE; Grant, WD; Ventosa, A (August 2008). "Sediminibacillus halophilus gen. nov., sp. nov., a moderately halophilic, Gram-positive bacterium from a hypersaline lake.". International Journal of Systematic and Evolutionary Microbiology 58 (Pt 8): 1961–7. doi:10.1099/ijs.0.65790-0. PMID 18676487. 
  • Wang, X; Xue, Y; Ma, Y (July 2009). "Sediminibacillus albus sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a hypersaline lake, and emended description of the genus Sediminibacillus Carrasco et al. 2008.". International Journal of Systematic and Evolutionary Microbiology 59 (Pt 7): 1640–4. doi:10.1099/ijs.0.004234-0. PMID 19542144. 

Wikidata ☰ Q26284839 entry



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