Biology:Species

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Short description: Basic unit of taxonomic classification, below genus

A species (pl. species) is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. Other ways of defining species include their karyotype, DNA sequence, morphology, behaviour, or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined.

The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million.[1][2][3] About 14% of these had been described by 2011.[3]

All species (except viruses) are given a two-part name, a "binomial". The first part of a binomial is the genus to which the species belongs. The second part is called the specific name or the specific epithet (in botanical nomenclature, also sometimes in zoological nomenclature). For example, Boa constrictor is one of the species of the genus Boa, with constrictor being the species' epithet.

While the definitions given above may seem adequate at first glance, when looked at more closely they represent problematic species concepts. For example, the boundaries between closely related species become unclear with hybridisation, in a species complex of hundreds of similar microspecies, and in a ring species. Also, among organisms that reproduce only asexually, the concept of a reproductive species breaks down, and each clone is potentially a microspecies. Although none of these are entirely satisfactory definitions, and while the concept of species may not be a perfect model of life, it is still a useful tool to scientists and conservationists for studying life on Earth, regardless of the theoretical difficulties. If species were fixed and clearly distinct from one another, there would be no problem, but evolutionary processes cause species to change. This obliges taxonomists to decide, for example, when enough change has occurred to declare that a lineage should be divided into multiple chronospecies, or when populations have diverged to have enough distinct character states to be described as cladistic species.

Species and higher taxa were seen from the time of Aristotle until the 18th century as categories that could be arranged in a hierarchy, the great chain of being. In the 19th century, biologists grasped that species could evolve given sufficient time. Charles Darwin's 1859 book On the Origin of Species explained how species could arise by natural selection. That understanding was greatly extended in the 20th century through genetics and population ecology. Genetic variability arises from mutations and recombination, while organisms themselves are mobile, leading to geographical isolation and genetic drift with varying selection pressures. Genes can sometimes be exchanged between species by horizontal gene transfer; new species can arise rapidly through hybridisation and polyploidy; and species may become extinct for a variety of reasons. Viruses are a special case, driven by a balance of mutation and selection, and can be treated as quasispecies.

Definition

Biologists and taxonomists have made many attempts to define species, beginning from morphology and moving towards genetics. Early taxonomists such as Linnaeus had no option but to describe what they saw: this was later formalised as the typological or morphological species concept. Ernst Mayr emphasised reproductive isolation, but this, like other species concepts, is hard or even impossible to test.[4][5] Later biologists have tried to refine Mayr's definition with the recognition and cohesion concepts, among others.[6] Many of the concepts are quite similar or overlap, so they are not easy to count: the biologist R. L. Mayden recorded about 24 concepts,[7] and the philosopher of science John Wilkins counted 26.[4] Wilkins further grouped the species concepts into seven basic kinds of concepts: (1) agamospecies for asexual organisms (2) biospecies for reproductively isolated sexual organisms (3) ecospecies based on ecological niches (4) evolutionary species based on lineage (5) genetic species based on gene pool (6) morphospecies based on form or phenotype and (7) taxonomic species, a species as determined by a taxonomist.[8]

Typological or morphological species

All adult Eurasian blue tits share the same coloration, unmistakably identifying the morphospecies.[9]

A typological species is a group of organisms in which individuals conform to certain fixed properties (a type), so that even pre-literate people often recognise the same taxon as do modern taxonomists.[10][11] The clusters of variations or phenotypes within specimens (such as longer or shorter tails) would differentiate the species. This method was used as a "classical" method of determining species, such as with Linnaeus, early in evolutionary theory. However, different phenotypes are not necessarily different species (e.g. a four-winged Drosophila born to a two-winged mother is not a different species). Species named in this manner are called morphospecies.[12][13]

In the 1970s, Robert R. Sokal, Theodore J. Crovello and Peter Sneath proposed a variation on the morphological species concept, a phenetic species, defined as a set of organisms with a similar phenotype to each other, but a different phenotype from other sets of organisms.[14] It differs from the morphological species concept in including a numerical measure of distance or similarity to cluster entities based on multivariate comparisons of a reasonably large number of phenotypic traits.[15]

Recognition and cohesion species

A mate-recognition species is a group of sexually reproducing organisms that recognise one another as potential mates.[16][17] Expanding on this to allow for post-mating isolation, a cohesion species is the most inclusive population of individuals having the potential for phenotypic cohesion through intrinsic cohesion mechanisms; no matter whether populations can hybridise successfully, they are still distinct cohesion species if the amount of hybridisation is insufficient to completely mix their respective gene pools.[18] A further development of the recognition concept is provided by the biosemiotic concept of species.[19]

Genetic similarity and barcode species

A region of the gene for the cytochrome c oxidase enzyme is used to distinguish species in the Barcode of Life Data Systems database.

In microbiology, genes can move freely even between distantly related bacteria, possibly extending to the whole bacterial domain. As a rule of thumb, microbiologists have assumed that members of Bacteria or Archaea with 16S ribosomal RNA gene sequences more similar than 97% to each other need to be checked by DNA–DNA hybridisation to decide if they belong to the same species.[20] This concept was narrowed in 2006 to a similarity of 98.7%.[21]

The average nucleotide identity (ANI) method quantifies genetic distance between entire genomes, using regions of about 10,000 base pairs. With enough data from genomes of one genus, algorithms can be used to categorize species, as for Pseudomonas avellanae in 2013,[22] and for all sequenced bacteria and archaea since 2020.[23] Observed ANI values among sequences appear to have an "ANI gap" at 85–95%, suggesting that a genetic boundary suitable for defining a species concept is present.[24]

DNA barcoding has been proposed as a way to distinguish species suitable even for non-specialists to use.[25] One of the barcodes is a region of mitochondrial DNA within the gene for cytochrome c oxidase. A database, Barcode of Life Data System, contains DNA barcode sequences from over 190,000 species.[26][27] However, scientists such as Rob DeSalle have expressed concern that classical taxonomy and DNA barcoding, which they consider a misnomer, need to be reconciled, as they delimit species differently.[28] Genetic introgression mediated by endosymbionts and other vectors can further make barcodes ineffective in the identification of species.[29]

Phylogenetic or cladistic species

The cladistic or phylogenetic species concept is that a species is the smallest lineage which is distinguished by a unique set of either genetic or morphological traits. No claim is made about reproductive isolation, making the concept useful also in palaeontology where only fossil evidence is available.

A phylogenetic or cladistic species is "the smallest aggregation of populations (sexual) or lineages (asexual) diagnosable by a unique combination of character states in comparable individuals (semaphoronts)".[30] The empirical basis – observed character states – provides the evidence to support hypotheses about evolutionarily divergent lineages that have maintained their hereditary integrity through time and space.[31][32][33][34] Molecular markers may be used to determine diagnostic genetic differences in the nuclear or mitochondrial DNA of various species.[35][30][36] For example, in a study done on fungi, studying the nucleotide characters using cladistic species produced the most accurate results in recognising the numerous fungi species of all the concepts studied.[36][37] Versions of the phylogenetic species concept that emphasise monophyly or diagnosability[38] may lead to splitting of existing species, for example in Bovidae, by recognising old subspecies as species, despite the fact that there are no reproductive barriers, and populations may intergrade morphologically.[39] Others have called this approach taxonomic inflation, diluting the species concept and making taxonomy unstable.[40] Yet others defend this approach, considering "taxonomic inflation" pejorative and labelling the opposing view as "taxonomic conservatism"; claiming it is politically expedient to split species and recognise smaller populations at the species level, because this means they can more easily be included as endangered in the IUCN red list and can attract conservation legislation and funding.[41]

Unlike the biological species concept, a cladistic species does not rely on reproductive isolation – its criteria are independent of processes that are integral in other concepts.[30] Therefore, it applies to asexual lineages.[35][36] However, it does not always provide clear cut and intuitively satisfying boundaries between taxa, and may require multiple sources of evidence, such as more than one polymorphic locus, to give plausible results.[36]

Evolutionary species

An evolutionary species, suggested by George Gaylord Simpson in 1951, is "an entity composed of organisms which maintains its identity from other such entities through time and over space, and which has its own independent evolutionary fate and historical tendencies".[7][42] This differs from the biological species concept in embodying persistence over time. Wiley and Mayden stated that they see the evolutionary species concept as "identical" to Willi Hennig's species-as-lineages concept, and asserted that the biological species concept, "the several versions" of the phylogenetic species concept, and the idea that species are of the same kind as higher taxa are not suitable for biodiversity studies (with the intention of estimating the number of species accurately). They further suggested that the concept works for both asexual and sexually-reproducing species.[43] A version of the concept is Kevin de Queiroz's "General Lineage Concept of Species".[44]

Ecological species

An ecological species is a set of organisms adapted to a particular set of resources, called a niche, in the environment. According to this concept, populations form the discrete phenetic clusters that we recognise as species because the ecological and evolutionary processes controlling how resources are divided up tend to produce those clusters.[45]

Genetic species

A genetic species as defined by Robert Baker and Robert Bradley is a set of genetically isolated interbreeding populations. This is similar to Mayr's Biological Species Concept, but stresses genetic rather than reproductive isolation.[46] In the 21st century, a genetic species could be established by comparing DNA sequences. Earlier, other methods were available, such as comparing karyotypes (sets of chromosomes) and allozymes (enzyme variants).[47]

Evolutionarily significant unit

An evolutionarily significant unit (ESU) or "wildlife species"[48] is a population of organisms considered distinct for purposes of conservation.[49]

Chronospecies

A chronospecies is defined in a single lineage (solid line) whose morphology changes with time. At some point, palaeontologists judge that enough change has occurred that two species (A and B), separated in time and anatomy, once existed.
Main page: Biology:Chronospecies

In palaeontology, with only comparative anatomy (morphology) and histology[50] from fossils as evidence, the concept of a chronospecies can be applied. During anagenesis (evolution, not necessarily involving branching), some palaeontologists seek to identify a sequence of species, each one derived from the phyletically extinct one before through continuous, slow and more or less uniform change. In such a time sequence, some palaeontologists assess how much change is required for a morphologically distinct form to be considered a different species from its ancestors.[51][52][53][54]

Viral quasispecies

Main page: Biology:Viral quasispecies

Viruses have enormous populations, are doubtfully living since they consist of little more than a string of DNA or RNA in a protein coat, and mutate rapidly. All of these factors make conventional species concepts largely inapplicable.[55] A viral quasispecies is a group of genotypes related by similar mutations, competing within a highly mutagenic environment, and hence governed by a mutation–selection balance. It is predicted that a viral quasispecies at a low but evolutionarily neutral and highly connected (that is, flat) region in the fitness landscape will outcompete a quasispecies located at a higher but narrower fitness peak in which the surrounding mutants are unfit, "the quasispecies effect" or the "survival of the flattest". There is no suggestion that a viral quasispecies resembles a traditional biological species.[56][57][58] The International Committee on Taxonomy of Viruses has since 1962 developed a universal taxonomic scheme for viruses; this has stabilised viral taxonomy.[59][60][61]

Mayr's biological species concept

Ernst Mayr proposed the widely used Biological Species Concept of reproductive isolation in 1942.

Most modern textbooks make use of Ernst Mayr's 1942 definition,[62][63] known as the Biological Species Concept as a basis for further discussion on the definition of species. It is also called a reproductive or isolation concept. This defines a species as[64]

groups of actually or potentially interbreeding natural populations, which are reproductively isolated from other such groups.[64]

It has been argued that this definition is a natural consequence of the effect of sexual reproduction on the dynamics of natural selection.[65][66][67][68] Mayr's use of the adjective "potentially" has been a point of debate; some interpretations exclude unusual or artificial matings that occur only in captivity, or that involve animals capable of mating but that do not normally do so in the wild.[64]

The species problem

Main page: Biology:Species concept

It is difficult to define a species in a way that applies to all organisms.[69] The debate about species concepts is called the species problem.[64][70][71][72] The problem was recognised even in 1859, when Darwin wrote in On the Origin of Species:

No one definition has satisfied all naturalists; yet every naturalist knows vaguely what he means when he speaks of a species. Generally the term includes the unknown element of a distinct act of creation.[73]

When Mayr's concept breaks down

Palaeontologists are limited to morphological evidence when deciding whether fossil life-forms like these Inoceramus bivalves formed a separate species.

Many authors have argued that a simple textbook definition, following Mayr's concept, works well for most multi-celled organisms, but breaks down in several situations:

  • When organisms reproduce asexually, as in single-celled organisms such as bacteria and other prokaryotes,[74] and parthenogenetic or apomictic multi-celled organisms. DNA barcoding and phylogenetics are commonly used in these cases.[75][76][77] The term quasispecies is sometimes used for rapidly mutating entities like viruses.[78][79]
  • When scientists do not know whether two morphologically similar groups of organisms are capable of interbreeding; this is the case with all extinct life-forms in palaeontology, as breeding experiments are not possible.[80]
  • When hybridisation permits substantial gene flow between species.[81]
  • In ring species, when members of adjacent populations in a widely continuous distribution range interbreed successfully but members of more distant populations do not.[82]
Willow warbler
Chiffchaff
The willow warbler and chiffchaff are almost identical in appearance but do not interbreed.

Species identification is made difficult by discordance between molecular and morphological investigations; these can be categorised as two types: (i) one morphology, multiple lineages (e.g. morphological convergence, cryptic species) and (ii) one lineage, multiple morphologies (e.g. phenotypic plasticity, multiple life-cycle stages).[83] In addition, horizontal gene transfer (HGT) makes it difficult to define a species.[84] All species definitions assume that an organism acquires its genes from one or two parents very like the "daughter" organism, but that is not what happens in HGT.[85] There is strong evidence of HGT between very dissimilar groups of prokaryotes, and at least occasionally between dissimilar groups of eukaryotes,[84] including some crustaceans and echinoderms.[86]

The evolutionary biologist James Mallet concludes that

there is no easy way to tell whether related geographic or temporal forms belong to the same or different species. Species gaps can be verified only locally and at a point of time. One is forced to admit that Darwin's insight is correct: any local reality or integrity of species is greatly reduced over large geographic ranges and time periods.[18]

The botanist Brent Mishler[87] argued that the species concept is not valid, notably because gene flux decreases gradually rather than in discrete steps, which hampers objective delimitation of species.[88] Indeed, complex and unstable patterns of gene flux have been observed in cichlid teleosts of the East African Great Lakes.[89] Wilkins argued that "if we were being true to evolution and the consequent phylogenetic approach to taxa, we should replace it with a 'smallest clade' idea" (a phylogenetic species concept).[90] Mishler and Wilkins [91] and others [92] concur with this approach, even though this would raise difficulties in biological nomenclature. Wilkins cited the ichthyologist Charles Tate Regan's early 20th century remark that "a species is whatever a suitably qualified biologist chooses to call a species".[90] Wilkins noted that the philosopher Philip Kitcher called this the "cynical species concept",[93] and arguing that far from being cynical, it usefully leads to an empirical taxonomy for any given group, based on taxonomists' experience.[90] Other biologists have gone further and argued that we should abandon species entirely, and refer to the "Least Inclusive Taxonomic Units" (LITUs),[94] a view that would be coherent with current evolutionary theory.[92]

Aggregates of microspecies

Main page: Biology:Species complex

The species concept is further weakened by the existence of microspecies, groups of organisms, including many plants, with very little genetic variability, usually forming species aggregates.[95] For example, the dandelion Taraxacum officinale and the blackberry Rubus fruticosus are aggregates with many microspecies—perhaps 400 in the case of the blackberry and over 200 in the dandelion,[96] complicated by hybridisation, apomixis and polyploidy, making gene flow between populations difficult to determine, and their taxonomy debatable.[97][98][99] Species complexes occur in insects such as Heliconius butterflies,[100] vertebrates such as Hypsiboas treefrogs,[101] and fungi such as the fly agaric.[102]

  • Blackberries belong to any of hundreds of microspecies of the Rubus fruticosus species aggregate.

  • The butterfly genus Heliconius contains many similar species.

  • The Hypsiboas calcaratus–fasciatus species complex contains at least six species of treefrog.

Hybridisation

Main page: Biology:Hybrid

Natural hybridisation presents a challenge to the concept of a reproductively isolated species, as fertile hybrids permit gene flow between two populations. For example, the carrion crow Corvus corone and the hooded crow Corvus cornix appear and are classified as separate species, yet they can hybridise where their geographical ranges overlap.[103]

Ring species

Main page: Biology:Ring species

A ring species is a connected series of neighbouring populations, each of which can sexually interbreed with adjacent related populations, but for which there exist at least two "end" populations in the series, which are too distantly related to interbreed, though there is a potential gene flow between each "linked" population.[104] Such non-breeding, though genetically connected, "end" populations may co-exist in the same region thus closing the ring. Ring species thus present a difficulty for any species concept that relies on reproductive isolation.[105] However, ring species are at best rare. Proposed examples include the herring gull–lesser black-backed gull complex around the North pole, the Ensatina eschscholtzii group of 19 populations of salamanders in America,[106] and the greenish warbler in Asia,[107] but many so-called ring species have turned out to be the result of misclassification leading to questions on whether there really are any ring species.[108][109][110][111]

  • Seven "species" of Larus gulls interbreed in a ring around the Arctic.

  • Opposite ends of the ring: a herring gull (Larus argentatus) (front) and a lesser black-backed gull (Larus fuscus) in Norway

  • A greenish warbler, Phylloscopus trochiloides

  • Presumed evolution of five "species" of greenish warblers around the Himalaya s

Taxonomy and naming

A cougar, mountain lion, panther, or puma, among other common names: its scientific name is Puma concolor.

Common and scientific names

The commonly used names for kinds of organisms are often ambiguous: "cat" could mean the domestic cat, Felis catus, or the cat family, Felidae. Another problem with common names is that they often vary from place to place, so that puma, cougar, catamount, panther, painter and mountain lion all mean Puma concolor in various parts of America, while "panther" may also mean the jaguar (Panthera onca) of Latin America or the leopard (Panthera pardus) of Africa and Asia. In contrast, the scientific names of species are chosen to be unique and universal (except for some inter-code homonyms); they are in two parts used together: the genus as in Puma, and the specific epithet as in concolor.[112][113]

Species description

The type specimen (holotype) of Lacerta plica, described by Linnaeus in 1758
Main page: Biology:Species description

A species is given a taxonomic name when a type specimen is described formally, in a publication that assigns it a unique scientific name. The description typically provides means for identifying the new species, which may not be based solely on morphology[114] (see cryptic species), differentiating it from other previously described and related or confusable species and provides a validly published name (in botany) or an available name (in zoology) when the paper is accepted for publication. The type material is usually held in a permanent repository, often the research collection of a major museum or university, that allows independent verification and the means to compare specimens.[115][116][117] Describers of new species are asked to choose names that, in the words of the International Code of Zoological Nomenclature, are "appropriate, compact, euphonious, memorable, and do not cause offence".[118]

Abbreviations

Books and articles sometimes intentionally do not identify species fully, using the abbreviation "sp." in the singular or "spp." (standing for species pluralis, Latin for "multiple species") in the plural in place of the specific name or epithet (e.g. Canis sp.). This commonly occurs when authors are confident that some individuals belong to a particular genus but are not sure to which exact species they belong, as is common in paleontology.[119]

Authors may also use "spp." as a short way of saying that something applies to many species within a genus, but not to all. If scientists mean that something applies to all species within a genus, they use the genus name without the specific name or epithet. The names of genera and species are usually printed in italics. However, abbreviations such as "sp." should not be italicised.[119]

When a species' identity is not clear, a specialist may use "cf." before the epithet to indicate that confirmation is required. The abbreviations "nr." (near) or "aff." (affine) may be used when the identity is unclear but when the species appears to be similar to the species mentioned after.[119]

Identification codes

With the rise of online databases, codes have been devised to provide identifiers for species that are already defined, including:

Lumping and splitting

Main page: Lumpers and splitters

The naming of a particular species, including which genus (and higher taxa) it is placed in, is a hypothesis about the evolutionary relationships and distinguishability of that group of organisms. As further information comes to hand, the hypothesis may be corroborated or refuted. Sometimes, especially in the past when communication was more difficult, taxonomists working in isolation have given two distinct names to individual organisms later identified as the same species. When two species names are discovered to apply to the same species, the older species name is given priority and usually retained, and the newer name considered as a junior synonym, a process called synonymy. Dividing a taxon into multiple, often new, taxa is called splitting. Taxonomists are often referred to as "lumpers" or "splitters" by their colleagues, depending on their personal approach to recognising differences or commonalities between organisms.[124][125][119] The circumscription of taxa, considered a taxonomic decision at the discretion of cognizant specialists, is not governed by the Codes of Zoological or Botanical Nomenclature, in contrast to the PhyloCode, and contrary to what is done in several other fields, in which the definitions of technical terms, like geochronological units and geopolitical entities, are explicitly delimited.[126][92]

Broad and narrow senses

Main page: Biology:Sensu

The nomenclatural codes that guide the naming of species, including the ICZN for animals and the ICN for plants, do not make rules for defining the boundaries of the species. Research can change the boundaries, also known as circumscription, based on new evidence. Species may then need to be distinguished by the boundary definitions used, and in such cases the names may be qualified with sensu stricto ("in the narrow sense") to denote usage in the exact meaning given by an author such as the person who named the species, while the antonym sensu lato ("in the broad sense") denotes a wider usage, for instance including other subspecies. Other abbreviations such as "auct." ("author"), and qualifiers such as "non" ("not") may be used to further clarify the sense in which the specified authors delineated or described the species.[119][127][128]

Change

Species are subject to change, whether by evolving into new species,[129] exchanging genes with other species,[130] merging with other species or by becoming extinct.[131]

Speciation

Main page: Biology:Speciation

The evolutionary process by which biological populations of sexually-reproducing organisms evolve to become distinct or reproductively isolated as species is called speciation.[132][133] Charles Darwin was the first to describe the role of natural selection in speciation in his 1859 book The Origin of Species.[134] Speciation depends on a measure of reproductive isolation, a reduced gene flow. This occurs most easily in allopatric speciation, where populations are separated geographically and can diverge gradually as mutations accumulate. Reproductive isolation is threatened by hybridisation, but this can be selected against once a pair of populations have incompatible alleles of the same gene, as described in the Bateson–Dobzhansky–Muller model.[129] A different mechanism, phyletic speciation, involves one lineage gradually changing over time into a new and distinct form (a chronospecies), without increasing the number of resultant species.[135]

Exchange of genes between species

Main page: Biology:Horizontal gene transfer
Horizontal gene transfers between widely separated species complicate the phylogeny of bacteria.

Horizontal gene transfer between organisms of different species, either through hybridisation, antigenic shift, or reassortment, is sometimes an important source of genetic variation. Viruses can transfer genes between species. Bacteria can exchange plasmids with bacteria of other species, including some apparently distantly related ones in different phylogenetic domains, making analysis of their relationships difficult, and weakening the concept of a bacterial species.[136][84][137][130]

Louis-Marie Bobay and Howard Ochman suggest, based on analysis of the genomes of many types of bacteria, that they can often be grouped "into communities that regularly swap genes", in much the same way that plants and animals can be grouped into reproductively isolated breeding populations. Bacteria may thus form species, analogous to Mayr's biological species concept, consisting of asexually reproducing populations that exchange genes by homologous recombination.[138][139]

Extinction

Further information: Biology:Extinction and Biology:Biology:Extinction event

A species is extinct when the last individual of that species dies, but it may be functionally extinct well before that moment. It is estimated that over 99 percent of all species that ever lived on Earth, some five billion species, are now extinct. Some of these were in mass extinctions such as those at the ends of the Ordovician, Devonian, Permian, Triassic and Cretaceous periods. Mass extinctions had a variety of causes including volcanic activity, climate change, and changes in oceanic and atmospheric chemistry, and they in turn had major effects on Earth's ecology, atmosphere, land surface and waters.[140][141] Another form of extinction is through the assimilation of one species by another through hybridization. The resulting single species has been termed as a "compilospecies".[142]

Practical implications

Biologists and conservationists need to categorise and identify organisms in the course of their work. Difficulty assigning organisms reliably to a species constitutes a threat to the validity of research results, for example making measurements of how abundant a species is in an ecosystem moot. Surveys using a phylogenetic species concept reported 48% more species and accordingly smaller populations and ranges than those using nonphylogenetic concepts; this was termed "taxonomic inflation",[143] which could cause a false appearance of change to the number of endangered species and consequent political and practical difficulties.[144][145] Some observers claim that there is an inherent conflict between the desire to understand the processes of speciation and the need to identify and to categorise.[145]

Conservation laws in many countries make special provisions to prevent species from going extinct. Hybridization zones between two species, one that is protected and one that is not, have sometimes led to conflicts between lawmakers, land owners and conservationists. One of the classic cases in North America is that of the protected northern spotted owl which hybridises with the unprotected California spotted owl and the barred owl; this has led to legal debates.[146] It has been argued that the species problem is created by the varied uses of the concept of species, and that the solution is to abandon it and all other taxonomic ranks, and use unranked monophyletic groups instead, an approach facilitated by the PhyloCode. It has been argued, too, that since species are not comparable, counting them is not a valid measure of biodiversity; alternative measures of phylogenetic biodiversity have been proposed.[147][88][148]

History

Classical forms

Main page: Biology:Aristotle's biology

In his biology, Aristotle used the term γένος (génos) to mean a kind, such as a bird or fish, and εἶδος (eidos) to mean a specific form within a kind, such as (within the birds) the crane, eagle, crow, or sparrow. These terms were translated into Latin as "genus" and "species", though they do not correspond to the Linnean terms thus named; today the birds are a class, the cranes are a family, and the crows a genus. A kind was distinguished by its attributes; for instance, a bird has feathers, a beak, wings, a hard-shelled egg, and warm blood. A form was distinguished by being shared by all its members, the young inheriting any variations they might have from their parents. Aristotle believed all kinds and forms to be distinct and unchanging. More importantly, in Aristotle's works, the terms γένος (génos) and εἶδος (eidos) are relative; a taxon that is considered an eidos in a given context can be considered a génos in another, and be further subdivided into eide (plural of eidos).[149][150] His approach remained influential until the Renaissance,[151] and still, to a lower extent, today.[152]

Fixed species

Main page: Great chain of being
John Ray believed that species breed true and do not change, even though variations exist.
Carl Linnaeus created the binomial system for naming species.

When observers in the Early Modern period began to develop systems of organization for living things, they placed each kind of animal or plant into a context. Many of these early delineation schemes would now be considered whimsical: schemes included consanguinity based on colour (all plants with yellow flowers) or behaviour (snakes, scorpions and certain biting ants). John Ray, an English naturalist, was the first to attempt a biological definition of species in 1686, as follows:

No surer criterion for determining species has occurred to me than the distinguishing features that perpetuate themselves in propagation from seed. Thus, no matter what variations occur in the individuals or the species, if they spring from the seed of one and the same plant, they are accidental variations and not such as to distinguish a species ... Animals likewise that differ specifically preserve their distinct species permanently; one species never springs from the seed of another nor vice versa.[153]

In the 18th century, the Swedish scientist Carl Linnaeus classified organisms according to shared physical characteristics, and not simply based upon differences.[154] Like many contemporary systematists,[155][156][157] he established the idea of a taxonomic hierarchy of classification based upon observable characteristics and intended to reflect natural relationships.[158][159] At the time, however, it was still widely believed that there was no organic connection between species (except, possibly, between those of a given genus),[92] no matter how similar they appeared. This view was influenced by European scholarly and religious education, which held that the taxa had been created by God, forming an Aristotelian hierarchy, the scala naturae or great chain of being. However, whether or not it was supposed to be fixed, the scala (a ladder) inherently implied the possibility of climbing.[160]

Mutability

In viewing evidence of hybridisation, Linnaeus recognised that species were not fixed and could change; he did not consider that new species could emerge and maintained a view of divinely fixed species that may alter through processes of hybridisation or acclimatisation.[161] By the 19th century, naturalists understood that species could change form over time, and that the history of the planet provided enough time for major changes. Jean-Baptiste Lamarck, in his 1809 Zoological Philosophy, described the transmutation of species, proposing that a species could change over time, in a radical departure from Aristotelian thinking.[162]

In 1859, Charles Darwin and Alfred Russel Wallace provided a compelling account of evolution and the formation of new species. Darwin argued that it was populations that evolved, not individuals, by natural selection from naturally occurring variation among individuals.[163] This required a new definition of species. Darwin concluded that species are what they appear to be: ideas, provisionally useful for naming groups of interacting individuals, writing:

I look at the term species as one arbitrarily given for the sake of convenience to a set of individuals closely resembling each other ... It does not essentially differ from the word variety, which is given to less distinct and more fluctuating forms. The term variety, again, in comparison with mere individual differences, is also applied arbitrarily, and for convenience sake.[164]

See also

References

  1. ↑ Wilson, Edward O. (2018-03-03). "Opinion: The 8 Million Species We Don't Know". The New York Times. ISSN 0362-4331. https://www.nytimes.com/2018/03/03/opinion/sunday/species-conservation-extinction.html. 
  2. ↑ Borenstein, S. (2019). "UN report: Humans accelerating extinction of other species". Associated Press. https://apnews.com/aaf1091c5aae40b0a110daaf04950672/. 
  3. ↑ 3.0 3.1 Mora, Camilo; Tittensor, Derek P.; Adl, Sina; Simpson, Alastair G. B.; Worm, Boris (2011-08-23). "How Many Species Are There on Earth and in the Ocean?". PLOS Biology 9 (8): e1001127. doi:10.1371/journal.pbio.1001127. PMID 21886479. 
  4. ↑ 4.0 4.1 "Species Concepts". Scientific American. 20 April 2012. https://blogs.scientificamerican.com/evo-eco-lab/species-concepts/. 
  5. ↑ Mallet, James (1995). "A species definition for the modern synthesis". Trends in Ecology & Evolution 10 (7): 294–299. doi:10.1016/0169-5347(95)90031-4. PMID 21237047. 
  6. ↑ Masters, J. C.; Spencer, H. G. (1989). "Why We Need a New Genetic Species Concept". Systematic Zoology 38 (3): 270–279. doi:10.2307/2992287. 
  7. ↑ 7.0 7.1 Mayden, R. L. (1997). "A hierarchy of species concepts: the denouement of the species problem". in Claridge, M. F.; Dawah, H. A.; Wilson, M. R.. The Units of Biodiversity – Species in Practice Special Volume 54. Systematics Association. 
  8. ↑ Zachos 2016, p. 79.
  9. ↑ Gooders, John (1986). Kingfisher Field Guide to the Birds of Britain and Ireland. Kingfisher Books. p. 246. ISBN 978-0-86272-139-8. 
  10. ↑ Gould, Stephen Jay (1980). "A Quahog is a Quahog". In: The Panda's Thumb: More Reflections in Natural History. New York: W.W. Norton & Company. pp. 204–213. ISBN 978-0-393-30023-9. https://archive.org/details/pandasthumb000step/page/204. 
  11. ↑ Maynard Smith, John (1989). Evolutionary Genetics. Oxford University Press. pp. 273–274. ISBN 978-0-19-854215-5. 
  12. ↑ Ruse, Michael (1969). "Definitions of Species in Biology". The British Journal for the Philosophy of Science 20 (2): 97–119. doi:10.1093/bjps/20.2.97. 
  13. ↑ Lewin, Ralph A. (1981). "Three Species Concepts". Taxon 30 (3): 609–613. doi:10.2307/1219942. 
  14. ↑ Claridge, Dawah & Wilson 1997, p. 404
  15. ↑ Ghiselin, Michael T. (1974). "A Radical Solution to the Species Problem". Systematic Biology 23 (4): 536–544. doi:10.1093/sysbio/23.4.536. https://philpapers.org/rec/GHIARS. 
  16. ↑ Claridge et al.:408–409.
  17. ↑ Paterson, H. E. H. (1985). "Species and Speciation". in Vrba, E. S.. Monograph No. 4: The recognition concept of species. Pretoria: Transvaal Museum. 
  18. ↑ 18.0 18.1 Mallet, James (28 September 1999). "Species, Concepts of". in Calow, P.. Encyclopaedia of Ecology and Environmental Management. Blackwell. pp. 709–711. ISBN 978-0-632-05546-3. http://www.ucl.ac.uk/taxome/jim/Sp/species.pdf. 
  19. ↑ Kull, Kalevi (2016). "The biosemiotic concept of the species". Biosemiotics 9: 61–71. doi:10.1007/s12304-016-9259-2. https://www.academia.edu/23574109. 
  20. ↑ Stackebrandt, E.; Goebel, B. M. (1994). "Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology". International Journal of Systematic Bacteriology 44 (4): 846–849. doi:10.1099/00207713-44-4-846. 
  21. ↑ Stackebrandt, E.; Ebers, J. (2006). "Taxonomic parameters revisited: tarnished gold standards". Microbiology Today 33 (4): 152–155. https://microbiologysociety.org/uploads/assets/uploaded/a8800d1f-de21-432d-a5399c13c9ad1643.pdf. 
  22. ↑ Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole et al. (2015). "Insights from 20 years of bacterial genome sequencing". Functional & Integrative Genomics 15 (2): 141–161. doi:10.1007/s10142-015-0433-4. PMID 25722247.  CC-BY icon.svg This article contains quotations from this source, which is available under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
  23. ↑ Parks, D. H.; Chuvochina, M.; Chaumeil, P. A.; Rinke, C.; Mussig, A. J.; Hugenholtz, P. (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology 38 (9): 1079–1086. doi:10.1038/s41587-020-0501-8. PMID 32341564. https://www.researchgate.net/publication/340954053. 
  24. ↑ Rodriguez-R, Luis M.; Jain, Chirag; Conrad, Roth E.; Aluru, Srinivas; Konstantinidis, Konstantinos T. (7 July 2021). "Reply to: "Re-evaluating the evidence for a universal genetic boundary among microbial species"". Nature Communications 12 (1). doi:10.1038/s41467-021-24129-1. 
  25. ↑ "What Is DNA Barcoding?". Barcode of Life. http://www.barcodeoflife.org/content/about/what-dna-barcoding. 
  26. ↑ Ratnasingham, Sujeevan; Hebert, Paul D. N. (2007). "BOLD: The Barcode of Life Data System (http://www.barcodinglife.org)". Molecular Ecology Notes 7 (3): 355–364. doi:10.1111/j.1471-8286.2007.01678.x. PMID 18784790. 
  27. ↑ Stoeckle, Mark (November–December 2013). "DNA Barcoding Ready for Breakout". GeneWatch 26 (5). http://www.councilforresponsiblegenetics.org/genewatch/GeneWatchPage.aspx?pageId=510. Retrieved 25 March 2018. 
  28. ↑ DeSalle, R.; Egan, M. G.; Siddall, M. (2005). "The unholy trinity: taxonomy, species delimitation and DNA barcoding". Philosophical Transactions of the Royal Society B: Biological Sciences 360 (1462): 1905–1916. doi:10.1098/rstb.2005.1722. PMID 16214748. 
  29. ↑ Whitworth, T. L.; Dawson, R. D.; Magalon, H.; Baudry, E. (2007). "DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae)". Proceedings of the Royal Society B: Biological Sciences 274 (1619): 1731–1739. doi:10.1098/rspb.2007.0062. PMID 17472911. 
  30. ↑ 30.0 30.1 30.2 Nixon, K. C.; Wheeler, Q. D. (1990). "An amplification of the phylogenetic species concept". Cladistics 6 (3): 211–223. doi:10.1111/j.1096-0031.1990.tb00541.x. 
  31. ↑ Wheeler, Quentin D.; Platnick, Norman I. 2000. The phylogenetic species concept (sensu Wheeler & Platnick). In: Wheeler & Meier2000, pp. 55–69
  32. ↑ Giraud, T.; Refrégier, G.; Le Gac, M.; de Vienne, D. M.; Hood, M. E. (2008). "Speciation in Fungi". Fungal Genetics and Biology 45 (6): 791–802. doi:10.1016/j.fgb.2008.02.001. PMID 18346919. 
  33. ↑ Bernardo, J. (2011). "A critical appraisal of the meaning and diagnosability of cryptic evolutionary diversity, and its implications for conservation in the face of climate change". in Hodkinson, T.; Jones, M.; Waldren, S. et al.. Climate Change, Ecology and Systematics. Systematics Association Special Series. Cambridge University Press. pp. 380–438. ISBN 978-0-521-76609-8. .
  34. ↑ Brower, Andrew V. Z. and Randall T. Schuh. (2021). Biological Systematics: Principles and Applications. Cornell University Press, Ithaca, NY.
  35. ↑ 35.0 35.1 Giraud, T.; Refrégier, G.; Le Gac, M.; de Vienne, D. M.; Hood, M. E. (2008). "Speciation in Fungi". Fungal Genetics and Biology 45 (6): 791–802. doi:10.1016/j.fgb.2008.02.001. PMID 18346919. 
  36. ↑ 36.0 36.1 36.2 36.3 Taylor, J. W.; Jacobson, D. J.; Kroken, S.; Kasuga, T.; Geiser, D. M.; Hibbett, D. S.; Fisher, M. C. (2000). "Phylogenetic species recognition and species concepts in fungi". Fungal Genetics and Biology 31 (1): 21–32. doi:10.1006/fgbi.2000.1228. PMID 11118132. 
  37. ↑ Taylor, J. W.; Turner, E.; Townsend, J. P.; Dettman, J. R.; Jacobson, D. (2006). "Eukaryotic microbes, species recognition and the geographic limits of species: Examples from the kingdom Fungi". Philosophical Transactions of the Royal Society B: Biological Sciences 361 (1475): 1947–1963. doi:10.1098/rstb.2006.1923. PMID 17062413. 
  38. ↑ Zachos 2016, pp. 91–92.
  39. ↑ Groves, C.; Grubb, P. 2011. Ungulate taxonomy. Baltimore, MD: The Johns Hopkins University Press.
  40. ↑ Heller, R.; Frandsen, P.; Lorenzen, E. D.; Siegismund, H. R. (2013). "Are there really twice as many bovid species as we thought?". Systematic Biology 62 (3): 490–493. doi:10.1093/sysbio/syt004. PMID 23362112. 
  41. ↑ Cotterill, F. et al. (2014). "Why one century of phenetics is enough: Response to 'are there really twice as many bovid species as we thought?'". Systematic Biology 63 (5): 819–832. doi:10.1093/sysbio/syu003. PMID 24415680. 
  42. ↑ Laporte, L. O. F. (1994). "Simpson on species". Journal of the History of Biology 27 (1): 141–159. doi:10.1007/BF01058629. PMID 11639257. 
  43. ↑ Wheeler & Meier 2000, pp. 70–92, 146–160, 198–208
  44. ↑ de Queiroz, Kevin (1998). "The general lineage concept of species, species criteria, and the process of speciation". Endless forms: species and speciation. Oxford University Press. pp. 57–75. 
  45. ↑ Ridley, Mark. "The Idea of Species". Evolution (2nd ed.). Blackwell Science. p. 719. ISBN 978-0-86542-495-1. 
  46. ↑ Baker, Robert J.; Bradley, Robert D. (2006). "Speciation in Mammals and the Genetic Species Concept". Journal of Mammalogy 87 (4): 643–662. doi:10.1644/06-MAMM-F-038R2.1. PMID 19890476. 
  47. ↑ Baker, Robert J.; Bradley, Robert D. (2006). "Speciation in Mammals and the Genetic Species Concept". Journal of Mammalogy 87 (4): 643–662. doi:10.1644/06-MAMM-F-038R2.1. PMID 19890476. 
  48. ↑ Government of Canada. Committee on the Status of Endangered Wildlife in Canada. "COSEWIC's Assessment Process and Criteria". Cosepac.gc.ca. http://www.cosepac.gc.ca/eng/sct0/assessment_process_e.cfm. 
  49. ↑ DeWeerdt, Sarah (29 July 2002). "What Really is an Evolutionarily Significant Unit?". University of Washington. http://conservationmagazine.org/2002/07/what-really-is-an-evolutionarily-significant-unit/. 
  50. ↑ de Buffrénil, Vivian; de Ricqlès, Armand J; Zylberberg, Louise; Padian, Kevin; Laurin, Michel; Quilhac, Alexandra (2021). Vertebrate skeletal histology and paleohistology. Boca Raton, FL: CRC Press. pp. xii + 825. ISBN 978-1351189576. https://books.google.com/books?id=tJcwEAAAQBAJ&dq=Vertebrate+Skeletal+Histology+and+Paleohistology&pg=PT8. 
  51. ↑ "Chronospecies". Oxford Reference. http://www.oxfordreference.com/view/10.1093/oi/authority.20110803095611471. 
  52. ↑ Carr, Steven M. (2005). "Evolutionary species and chronospecies". Memorial University Newfoundland and Labrador. https://www.mun.ca/biology/scarr/Evolutionary_vs_Chronospecies.html. 
  53. ↑ Dzik, J. (1985). "Typologic versus population concepts of chronospecies: implications for ammonite biostratigraphy". Acta Palaeontologica Polonica 30 (1–2): 71–92. https://www.app.pan.pl/archive/published/app30/app30-071.pdf. 
  54. ↑ O'Brien, Michael J.; Lyman, R. Lee (2007). Applying Evolutionary Archaeology: A Systematic Approach. Springer. pp. 146–149. ISBN 978-0-306-47468-2. https://books.google.com/books?id=IkAOBwAAQBAJ&pg=PA146. 
  55. ↑ Van Regenmortel, Marc H. V. (2010). "Logical puzzles and scientific controversies: The nature of species, viruses and living organisms". Systematic and Applied Microbiology 33 (1): 1–6. doi:10.1016/j.syapm.2009.11.001. PMID 20005655. 
  56. ↑ van Nimwegen, Erik; Crutchfield, James P.; Huynen, Martijn (August 1999). "Neutral evolution of mutational robustness". PNAS 96 (17): 9716–9720. doi:10.1073/pnas.96.17.9716. PMID 10449760. Bibcode: 1999PNAS...96.9716V. 
  57. ↑ Wilke, Claus O.; Wang, Jia Lan; Ofria, Charles; Lenski, Richard E.; Adami, Christoph (2001). "Evolution of digital organisms at high mutation rates leads to survival of the flattest". Nature 412 (6844): 331–333. doi:10.1038/35085569. PMID 11460163. Bibcode: 2001Natur.412..331W. https://authors.library.caltech.edu/56230/2/412331a0_S1.pdf. 
  58. ↑ Elena, S. F.; Agudelo-Romero, P.; Carrasco, P. et al. (2008). "Experimental evolution of plant RNA viruses". Heredity 100 (5): 478–483. doi:10.1038/sj.hdy.6801088. PMID 18253158. 
  59. ↑ King, Andrew M.Q.; Lefkowitz, E.; Adams, M. J.; Carstens, E. B. (2012). Virus Taxonomy Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier. ISBN 978-0-12-384684-6. http://www.sciencedirect.com/science/book/9780123846846#ancp4. Retrieved 13 April 2017. 
  60. ↑ Fauquet, C. M.; Fargette, D. (2005). "International Committee on Taxonomy of Viruses and the 3,142 unassigned species". Virology Journal 2: 64. doi:10.1186/1743-422X-2-64. PMID 16105179. 
  61. ↑ Gibbs, A. J. (2013). "Viral taxonomy needs a spring clean; its exploration era is over". Virology Journal 10: 254. doi:10.1186/1743-422X-10-254. PMID 23938184. 
  62. ↑ Mayr, Ernst (1942). Systematics and the Origin of Species. New York: Columbia University Press. https://archive.org/details/systematicsorigi0000mayr_p8z7. 
  63. ↑ Wheeler, pp. 17–29
  64. ↑ 64.0 64.1 64.2 64.3 de Queiroz, K. (2005). "Ernst Mayr and the modern concept of species". PNAS 102 (Supplement 1): 6600–6607. doi:10.1073/pnas.0502030102. PMID 15851674. Bibcode: 2005PNAS..102.6600D. 
  65. ↑ Hopf, F. A.; Hopf, F. W. (1985). "The role of the Allee effect on species packing". Theoretical Population Biology 27: 27–50. doi:10.1016/0040-5809(85)90014-0. 
  66. ↑ Bernstein, H.; Byerly, H. C.; Hopf, F. A.; Michod, R.E. (1985). "Sex and the emergence of species". Journal of Theoretical Biology 117 (4): 665–690. doi:10.1016/S0022-5193(85)80246-0. PMID 4094459. Bibcode: 1985JThBi.117..665B. 
  67. ↑ Bernstein, Carol; Bernstein, Harris (1991). Aging, sex, and DNA repair. Boston: Academic Press. ISBN 978-0-12-092860-6. 
  68. ↑ Michod, Richard E. (1995). Eros and Evolution: A Natural Philosophy of Sex. Addison-Wesley. ISBN 978-0-201-44232-8. https://archive.org/details/erosevolutionnat0000mich. 
  69. ↑ Hanage, William P. (2013), "Fuzzy species revisited", BMC Biology 11 (41): 41, doi:10.1186/1741-7007-11-41, PMID 23587266 
  70. ↑ Koch, H. (2010). "Combining morphology and DNA barcoding resolves the taxonomy of Western Malagasy Liotrigona Moure, 1961". African Invertebrates 51 (2): 413–421. doi:10.5733/afin.051.0210. https://www.uthfa.com/wp-content/uploads/2016/08/Koch_AFRICAN_INVERTEBRATES_2010_51_413-421.pdf. 
  71. ↑ De Queiroz, K. (2007). "Species concepts and species delimitation". Systematic Biology 56 (6): 879–886. doi:10.1080/10635150701701083. PMID 18027281. 
  72. ↑ Fraser, C.; Alm, E. J.; Polz, M. F.; Spratt, B. G.; Hanage, W. P. (2009). "The bacterial species challenge: making sense of genetic and ecological diversity". Science 323 (5915): 741–746. doi:10.1126/science.1159388. PMID 19197054. Bibcode: 2009Sci...323..741F. closed access
  73. ↑ "Darwin 1859 Chapter II, p. 59". Darwin-online.org.uk. http://darwin-online.org.uk/content/frameset?viewtype=side&itemID=F373&pageseq=59. 
  74. ↑ Gevers, Dirk; Cohan, Frederick M.; Lawrence, Jeffrey G.; Spratt, Brian G.; Coenye, Tom; Feil, Edward J.; Stackebrandt, Erko; De Peer, Yves Van et al. (2005). "Opinion: Re-evaluating prokaryotic species". Nature Reviews Microbiology 3 (9): 733–9. doi:10.1038/nrmicro1236. PMID 16138101. 
  75. ↑ Templeton, A. R. (1989). "The meaning of species and speciation: A genetic perspective". in Otte, D.; Endler, J. A.. Speciation and its Consequences. Sinauer Associates. pp. 3–27. 
  76. ↑ Edward G. Reekie; Fakhri A. Bazzaz (2005). Reproductive allocation in plants. Academic Press. p. 99. ISBN 978-0-12-088386-8. https://books.google.com/books?id=_KJdaiLKAogC&pg=PA99. 
  77. ↑ Rosselló-Mora, Ramon; Amann, Rudolf (January 2001). "The species concept for prokaryotes". FEMS Microbiology Reviews 25 (1): 39–67. doi:10.1111/j.1574-6976.2001.tb00571.x. PMID 11152940. 
  78. ↑ Andino, Raul; Domingo, Esteban (2015). "Viral quasispecies". Virology 479–480: 46–51. doi:10.1016/j.virol.2015.03.022. PMID 25824477. 
  79. ↑ Biebricher, C. K.; Eigen, M. (2006). Quasispecies: Concept and Implications for Virology. Current Topics in Microbiology and Immunology. 299. Springer. pp. 1–31. doi:10.1007/3-540-26397-7_1. ISBN 978-3-540-26397-5. 
  80. ↑ Teueman, A. E. (2009). "The Species-Concept in Palaeontology". Geological Magazine 61 (8): 355–360. doi:10.1017/S001675680008660X. Bibcode: 1924GeoM...61..355T. https://www.cambridge.org/core/journals/geological-magazine/article/div-classtitlethe-species-concept-in-palaeontologydiv/A203CDD72F8979A98B134274082C1A1D#. 
  81. ↑ Zachos 2016, p. 101.
  82. ↑ Zachos 2016, pp. 156–157.
  83. ↑ Lahr, D. J.; Laughinghouse, H. D.; Oliverio, A. M.; Gao, F.; Katz, L. A. (2014). "How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on Earth". BioEssays 36 (10): 950–959. doi:10.1002/bies.201400056. PMID 25156897. 
  84. ↑ 84.0 84.1 84.2 Melcher, Ulrich (2001). "Molecular genetics: Horizontal gene transfer". Oklahoma State University. http://bioinfosu.okstate.edu/MG/MGW3/MG334.html. 
  85. ↑ Bapteste, E. (May 2005). "Do orthologous gene phylogenies really support tree-thinking?". BMC Evolutionary Biology 5 (33): 33. doi:10.1186/1471-2148-5-33. PMID 15913459. 
  86. ↑ Williamson, David I. (2003). The Origins of Larvae. Kluwer. ISBN 978-1-4020-1514-4. 
  87. ↑ Mishler, Brent D. (2022). "Ecology, evolution, and systematics in a post-species world". Species problems and beyond: contemporary issues in philosophy and practice. Boca Raton: CRC Press, Taylor & Francis Group. ISBN 978-0-367-85560-4. OCLC 1273727987. 
  88. ↑ 88.0 88.1 Mishler, Brent D. (1999). "Getting Rid of Species?". in Wilson, R.. Species: New Interdisciplinary Essays. MIT Press. pp. 307–315. ISBN 978-0262731232. https://pdfs.semanticscholar.org/672e/7dbe0b756ec853fdb0a3580aca4dffb6f64b.pdf. 
  89. ↑ Salzburger, Walter (November 2018). "Understanding explosive diversification through cichlid fish genomics" (in en). Nature Reviews Genetics 19 (11): 705–717. doi:10.1038/s41576-018-0043-9. ISSN 1471-0064. PMID 30111830. https://doi.org/10.1038/s41576-018-0043-9. 
  90. ↑ 90.0 90.1 90.2 Wilkins, John S. (2022). "The Good Species". Species problems and beyond: contemporary issues in philosophy and practice. Boca Raton: CRC Press, Taylor & Francis Group. ISBN 978-0-367-85560-4. OCLC 1273727987. 
  91. ↑ Mishler, Brent D.; Wilkins, John S. (2018). "The Hunting of the SNaRC: A Snarky Solution to the Species Problem". Philosophy, Theory, and Practice in Biology (University of Michigan Library) 10 (20220112). doi:10.3998/ptpbio.16039257.0010.001. 
  92. ↑ 92.0 92.1 92.2 92.3 Laurin, Michel (3 August 2023). The Advent of PhyloCode: The Continuing Evolution of Biological Nomenclature. CRC Press. p. xv + 209. doi:10.1201/9781003092827. ISBN 978-1-003-09282-7. https://www.taylorfrancis.com/books/mono/10.1201/9781003092827/advent-phylocode-michel-laurin. 
  93. ↑ Kitcher, Philip (June 1984). "Species". Philosophy of Science 51 (2): 308–333. doi:10.1086/289182. "I defend a view of the species category, pluralistic realism, which is designed to do justice to the insights of many different groups of systematists.". 
  94. ↑ Pleijel, F.; Rouse, G. W. (22 March 2000). "Least-inclusive taxonomic unit: a new taxonomic concept for biology" (in en). Proceedings of the Royal Society of London. Series B: Biological Sciences 267 (1443): 627–630. doi:10.1098/rspb.2000.1048. ISSN 0962-8452. PMID 10787169. PMC 1690571. https://doi.org/10.1098/rspb.2000.1048. 
  95. ↑ Heywood, V. H. (1962). "The 'species aggregate' in theory and practice". in Heywood, V. H.; Löve, Á.. Symposium on Biosystematics, Montreal, October 1962. pp. 26–36. 
  96. ↑ Pimentel, David (2014). Biological Invasions: Economic and Environmental Costs of Alien Plant, Animal, and Microbe Species. CRC Press. p. 92. ISBN 978-1-4200-4166-8. https://books.google.com/books?id=90jRBQAAQBAJ&pg=PA92. 
  97. ↑ Jarvis, C. E. (1992). "Seventy-Two Proposals for the Conservation of Types of Selected Linnaean Generic Names, the Report of Subcommittee 3C on the Lectotypification of Linnaean Generic Names". Taxon 41 (3): 552–583. doi:10.2307/1222833. 
  98. ↑ Wittzell, Hakan (1999). "Chloroplast DNA variation and reticulate evolution in sexual and apomictic sections of dandelions". Molecular Ecology 8 (12): 2023–2035. doi:10.1046/j.1365-294x.1999.00807.x. PMID 10632854. 
  99. ↑ Dijk, Peter J. van (2003). "Ecological and evolutionary opportunities of apomixis: insights from Taraxacum and Chondrilla". Philosophical Transactions of the Royal Society B 358 (1434): 1113–1121. doi:10.1098/rstb.2003.1302. PMID 12831477. 
  100. ↑ Mallet, James; Beltrán, M.; Neukirchen, W.; Linares, M. (2007). "Natural hybridization in heliconiine butterflies: the species boundary as a continuum". BMC Evolutionary Biology 7 (1): 28. doi:10.1186/1471-2148-7-28. PMID 17319954. 
  101. ↑ Ron, Santiago; Caminer, Marcel (2014). "Systematics of treefrogs of the Hypsiboas calcaratus and Hypsiboas fasciatus species complex (Anura, Hylidae) with the description of four new species". ZooKeys (370): 1–68. doi:10.3897/zookeys.370.6291. PMID 24478591. Bibcode: 2014ZooK..370....1C. 
  102. ↑ Geml, J.; Tulloss, R. E.; Laursen, G. A.; Sasanova, N. A.; Taylor, D. L. (2008). "Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete". Molecular Phylogenetics and Evolution 48 (2): 694–701. doi:10.1016/j.ympev.2008.04.029. PMID 18547823. 
  103. ↑ "Defining a species". University of California Berkeley. http://evolution.berkeley.edu/evolibrary/article/0_0_0/evo_41. 
  104. ↑ Zachos 2016, p. 188.
  105. ↑ Stamos, David N. (2003). The Species Problem: Biological Species, Ontology, and the Metaphysics of Biology. Lexington Books. p. 330. ISBN 978-0-7391-6118-0. https://books.google.com/books?id=KT02AAAAQBAJ&pg=PA330. 
  106. ↑ Moritz, C.; Schneider, C. J.; Wake, D. B. (1992). "Evolutionary Relationships Within the Ensatina eschscholtzii Complex Confirm the Ring Species Interpretation". Systematic Biology 41 (3): 273–291. doi:10.1093/sysbio/41.3.273. http://theantlife.com/wp-content/uploads/2014/03/Mortiz-etal-1992_Ring-species-interpretation-confirmed-in-salamanders.pdf. 
  107. ↑ Irwin, D. E.; Bensch, Staffan; Irwin, Jessica H.; Price, Trevor D. (2005). "Speciation by Distance in a Ring Species". Science 307 (5708): 414–6. doi:10.1126/science.1105201. PMID 15662011. Bibcode: 2005Sci...307..414I. 
  108. ↑ Martens, Jochen; Päckert, Martin (2007). "Ring species – Do they exist in birds?". Zoologischer Anzeiger 246 (4): 315–324. doi:10.1016/j.jcz.2007.07.004. 
  109. ↑ Alcaide, M.; Scordato, E. S. C.; Price, T. D.; Irwin, D. E. (2014). "Genomic divergence in a ring species complex". Nature 511 (7507): 83–85. doi:10.1038/nature13285. PMID 24870239. Bibcode: 2014Natur.511...83A. 
  110. ↑ Liebers, Dorit; Knijff, Peter de; Helbig, Andreas J. (2004). "The herring gull complex is not a ring species". Proceedings of the Royal Society of London. Series B: Biological Sciences 271 (1542): 893–901. doi:10.1098/rspb.2004.2679. PMID 15255043. 
  111. ↑ Highton, R. (1998). "Is Ensatina eschscholtzii a ring species?". Herpetologica 54 (2): 254–278. 
  112. ↑ "A Word About Species Names ...". Smithsonian Marine Station at Fort Pierce. http://www.sms.si.edu/irlspec/NamSpecies.htm. 
  113. ↑ Hone, Dave (19 June 2013). "What's in a name? Why scientific names are important". The Guardian. https://www.theguardian.com/science/lost-worlds/2013/jun/19/dinosaurs-fossils. 
  114. ↑ Lawley, Jonathan W.; Gamero-Mora, Edgar; Maronna, Maximiliano M.; Chiaverano, Luciano M.; Stampar, Sérgio N.; Hopcroft, Russell R.; Collins, Allen G.; Morandini, André C. (2022-09-29). "Morphology is not always useful for diagnosis, and that's ok: Species hypotheses should not be bound to a class of data. Reply to Brown and Gibbons (S Afr J Sci. 2022;118(9/10), Art. #12590)". South African Journal of Science 118 (9/10). doi:10.17159/sajs.2022/14495. https://sajs.co.za/article/view/14495. 
  115. ↑ One example of an abstract of an article naming a new species can be found at Wellner, S.; Lodders, N.; Kämpfer, P. (2012). "Methylobacterium cerastii sp. nov., a novel species isolated from the leaf surface of Cerastium holosteoides". International Journal of Systematic and Evolutionary Microbiology 62 (Pt 4): 917–924. doi:10.1099/ijs.0.030767-0. PMID 21669927. 
  116. ↑ Hitchcock, A. S. (1921), "The Type Concept in Systematic Botany", American Journal of Botany 8 (5): 251–255, doi:10.2307/2434993, https://www.biodiversitylibrary.org/part/314424 
  117. ↑ Nicholson, Dan H.. "Botanical nomenclature, types, & standard reference works". Smithsonian National Museum of Natural History, Department of Botany. http://botany.si.edu/references/botlinks/dhntyp.htm. 
  118. ↑ "International Code of Zoological Nomenclature, Recommendation 25C". http://www.nhm.ac.uk/hosted-sites/iczn/code/. 
  119. ↑ 119.0 119.1 119.2 119.3 119.4 Winston, Judith E. (1999). Describing species. Practical taxonomic procedure for biologists. New York: Columbia University Press. pp. 141–144. 
  120. ↑ "Home – Taxonomy – NCBI". Ncbi.nlm.nih.gov. 19 October 2012. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  121. ↑ "KEGG Organisms: Complete Genomes". Genome.jp. http://www.genome.jp/kegg/catalog/org_list.html. 
  122. ↑ "Taxonomy". https://www.uniprot.org/help/taxonomy. 
  123. ↑ "ITIS: Homo sapiens". Catalogue of Life. http://www.catalogueoflife.org/col/details/species/id/e3b90576561f93a8ac8b59e185b01511/synonym/ee0f23e7dd7ddbf69de58c0abba12e5b. 
  124. ↑ Simpson, George Gaylord (1945). "The Principles of Classification and a Classification of Mammals". Bulletin of the American Museum of Natural History 85: 23. 
  125. ↑ Chase, Bob (2005). "Upstart Antichrist". History Workshop Journal 60 (1): 202–206. doi:10.1093/hwj/dbi042. 
  126. ↑ Laurin, Michel (23 July 2023). "The PhyloCode : The logical outcome of millennia of evolution of biological nomenclature?" (in en). Zoologica Scripta 52 (6): 543–555. doi:10.1111/zsc.12625. ISSN 0300-3256. https://doi.org/10.1111/zsc.12625. 
  127. ↑ Wilson, Philip (2016). "sensu stricto, sensu lato". http://www.treeterms.co.uk/definitions/sensu-stricto-sensu-lato. 
  128. ↑ "Glossary: sensu". International Commission on Zoological Nomenclature. http://www.nhm.ac.uk/hosted-sites/iczn/code/index.jsp?booksection=glossary&nfv=true. 
  129. ↑ 129.0 129.1 Barton, N. H. (June 2010). "What role does natural selection play in speciation?". Philosophical Transactions of the Royal Society B 365 (1547): 1825–1840. doi:10.1098/rstb.2010.0001. PMID 20439284. 
  130. ↑ 130.0 130.1 Vaux, Felix; Trewick, Steven A.; Morgan-Richards, Mary (2017). "Speciation through the looking-glass". Biological Journal of the Linnean Society 120 (2): 480–488. doi:10.1111/bij.12872. 
  131. ↑ Zachos 2016, pp. 77–96.
  132. ↑ Cook, Orator F. (30 March 1906). "Factors of species-formation". Science 23 (587): 506–507. doi:10.1126/science.23.587.506. PMID 17789700. Bibcode: 1906Sci....23..506C. https://zenodo.org/record/1447954. 
  133. ↑ Cook, Orator F. (November 1908). "Evolution Without Isolation". The American Naturalist 42 (503): 727–731. doi:10.1086/279001. 
  134. ↑ Via, Sara (16 June 2009). "Natural selection in action during speciation". Proc. Natl. Acad. Sci. U.S.A. 106 (Suppl 1): 9939–9946. doi:10.1073/pnas.0901397106. PMID 19528641. Bibcode: 2009PNAS..106.9939V. 
  135. ↑ Mayr, Ernst (1982). "Speciation and Macroevolution". Evolution 36 (6): 1119–1132. doi:10.1111/j.1558-5646.1982.tb05483.x. PMID 28563569. 
  136. ↑ Pennisi, Elizabeth (2004). "Researchers Trade Insights about Gene Swapping". Science 334–335: 335. http://www2.nau.edu/~bah/BIO471/Reader/Pennisi_2003.pdf. 
  137. ↑ Zhaxybayeva, Olga; Peter Gogarten, J. (2004). "Cladogenesis, coalescence and the evolution of the three domains of life". Trends in Genetics 20 (4): 182–187. doi:10.1016/j.tig.2004.02.004. PMID 15041172. http://web.uconn.edu/gogarten/articles/TIG2004_cladogenesis_paper.pdf. 
  138. ↑ Venton, Danielle (2017). "Highlight: Applying the Biological Species Concept across All of Life". Genome Biology and Evolution 9 (3): 502–503. doi:10.1093/gbe/evx045. PMID 28391326. 
  139. ↑ Bobay, Louis-Marie; Ochman, Howard (2017). "Biological Species Are Universal across Life's Domains". Genome Biology and Evolution 9 (3): 491–501. doi:10.1093/gbe/evx026. PMID 28186559. 
  140. ↑ Kunin, W. E.; Gaston, Kevin, eds (1996). The Biology of Rarity: Causes and consequences of rare–common differences. Springer. ISBN 978-0-412-63380-5. https://books.google.com/books?id=4LHnCAAAQBAJ&pg=PA110. 
  141. ↑ Stearns, Beverly Peterson; Stearns, Stephen C. (2000). Watching, from the Edge of Extinction. New Haven, London: Yale University Press. p. preface x. ISBN 978-0-300-08469-6. https://books.google.com/books?id=0BHeC-tXIB4C&q=99%20percent. 
  142. ↑ Zachos 2016, p. 82.
  143. ↑ Zachos, Frank E. (2015). "Taxonomic inflation, the Phylogenetic Species Concept and lineages in the Tree of Life – a cautionary comment on species splitting". Journal of Zoological Systematics and Evolutionary Research 53 (2): 180–184. doi:10.1111/jzs.12088. 
  144. ↑ Agapow, Paul-Michael; Bininda-Emonds, Olaf R. P.; Crandall, Keith A.; Gittleman, John L.; Mace, Georgina M.; Marshall, Jonathon C.; Purvis, Andy (2004). "The Impact of Species Concept on Biodiversity Studies". The Quarterly Review of Biology 79 (2): 161–179. doi:10.1086/383542. PMID 15232950. http://www.efn.uncor.edu/departamentos/divbioeco/divveg1/micologia/practico%20micologia/trabajo%20de%20campo/2-The%20impact%20of%20species%20concept%20on%20biodiversity%20studies.%20Agapow%20et%20al.%20(2004).pdf. 
  145. ↑ 145.0 145.1 Hey, Jody (July 2001). "The mind of the species problem". Trends in Ecology and Evolution 16 (7): 326–329. doi:10.1016/S0169-5347(01)02145-0. PMID 11403864. 
  146. ↑ Haig, Susan M.; Allendorf, F.W. (2006). "Hybrids and Policy". in Scott, J. Michael; Goble, D. D.; Davis, Frank W.. The Endangered Species Act at Thirty, Volume 2: Conserving Biodiversity in Human-Dominated Landscapes. Washington: Island Press. pp. 150–163. http://digitalcommons.unl.edu/usgsstaffpub/708. 
  147. ↑ Faith, Daniel P. (1 January 1992). "Conservation evaluation and phylogenetic diversity". Biological Conservation 61 (1): 1–10. doi:10.1016/0006-3207(92)91201-3. ISSN 0006-3207. https://doi.org/10.1016/0006-3207(92)91201-3. 
  148. ↑ Vane-Wright, R. I.; Humphries, C. J.; Williams, P. H. (1991). "What to protect? – systematics and the agony of choice". Biological Conservation 55 (3): 235–254. doi:10.1016/0006-3207(91)90030-D. 
  149. ↑ Pellegrin, Pierre (1986). Aristotle's classification of animals: biology and the conceptual unity of the Aristotelian corpus. Berkeley, Calif.: Univ. of California Pr. p. xiv + 235. ISBN 0520055020. 
  150. ↑ Laurin, Michel; Humar, Marcel (10 January 2022). "Phylogenetic signal in characters from Aristotle's History of Animals" (in fr). Comptes Rendus Palevol (1). doi:10.5852/cr-palevol2022v21a1. 
  151. ↑ Leroi, Armand Marie (2014). The Lagoon: How Aristotle Invented Science. Bloomsbury. pp. 88–90. ISBN 978-1-4088-3622-4. 
  152. ↑ Rigato, Emanuele; Minelli, Alessandro (28 June 2013). "The great chain of being is still here". Evolution: Education and Outreach 6 (1): 18. doi:10.1186/1936-6434-6-18. ISSN 1936-6434. http://www.evolution-outreach.com/content/6/1/18. 
  153. ↑ Ray, John (1686). Historia plantarum generalis, Tome I, Libr. I. p. Chap. XX, page 40. , quoted in Mayr, Ernst (1982). The growth of biological thought: diversity, evolution, and inheritance. Belknap Press. p. 256. ISBN 9780674364455. https://archive.org/details/growthofbiologic00mayr. 
  154. ↑ Davis, P. H.; Heywood, V. H. (1973). Principles of Angiosperm Taxonomy. Huntington, NY: Robert E. Krieger Publishing Company. p. 17. 
  155. ↑ Magnol, Petrus (1689) (in la). Prodromus historiae generalis plantarum in quo familiae plantarum per tabulas disponuntur. Pech. pp. 79. https://books.google.com/books?id=RShVAAAAcAAJ&dq=Prodromus+historiae+generalis+plantarum+in+quo+familiae+plantarum+per+tabulas+disponuntur&pg=PA1. 
  156. ↑ Tournefort, Joseph Pitton de (1656-1708) Auteur du texte (1694) (in EN). Elemens de botanique, ou Methode pour connoître les plantes. I. [Texte. / . Par Mr Pitton Tournefort... [T. I-III]]. Paris: L’Imprimerie Royale. pp. 562. https://gallica.bnf.fr/ark:/12148/btv1b8454361d/f9.item. 
  157. ↑ Jussieu, Antoine-Laurent de (1789) (in la). Antonii Laurentii de Jussieu ... Genera plantarum secundum ordines naturales disposita: juxta methodum in horto regio Parisiensi exaratam, anno M.DCC.LXXIV... Apud viduam Herissant, typographum, viâ novâ B.M. sub signo Crucis Aureæ. Et Theophilum Barrois, ad ripam Augustinianorum.. pp. 498. https://books.google.com/books?id=ctEsqqV0LHoC&dq=Genera+plantarum+secundum+ordines+naturales+disposita+juxta+methodum+in+horto+regio+parisiensi+exaratam%2C+anno+1774&pg=PA1. 
  158. ↑ Reveal, James L.; Pringle, James S. (1993). "7. Taxonomic Botany and Floristics". Flora of North America. Oxford University Press. pp. 160–161. ISBN 978-0-19-505713-3. 
  159. ↑ Simpson, George Gaylord (1961). Principles of Animal Taxonomy. Columbia University Press. pp. 56–57. 
  160. ↑ Mahoney, Edward P. (1987). "Lovejoy and the Hierarchy of Being". Journal of the History of Ideas 48 (2): 211–230. doi:10.2307/2709555. 
  161. ↑ "Carl Linnaeus (1707–1778)". UCMP Berkeley. http://www.ucmp.berkeley.edu/history/linnaeus.html. 
  162. ↑ Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Harvard: Belknap Harvard. pp. 170–197. ISBN 978-0-674-00613-3. 
  163. ↑ Bowler, Peter J. (2003). Evolution: The History of an Idea (3rd ed.). Berkeley, CA: University of California Press. pp. 177–223 and passim. ISBN 978-0-520-23693-6. https://archive.org/details/evolutionhistory0000bowl_n7y8/page/177. 
  164. ↑ Menand, Louis (2001). The Metaphysical Club: A Story of Ideas in America. Farrar, Straus and Giroux. pp. 123–124. ISBN 978-0-374-70638-8. 

Sources

  • Claridge, M. F.; Dawah, H. A.; Wilson, M. R., eds (1997). Species: The Units of Biodiversity. Chapman & Hall. ISBN 978-0-412-63120-7. 
  • Wheeler, Quentin; Meier, Rudolf, eds (2000). Species Concepts and Phylogenetic Theory: A Debate. Columbia University Press. ISBN 978-0-231-10143-1. 
  • Zachos, Frank E. (2016). Species Concepts in Biology: Historical Development, Theoretical Foundations and Practical Relevance. Springer. ISBN 978-3-319-44964-7. 

External links



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