Chemistry:Voronoi deformation density

Voronoi deformation density (VDD) is a method employed in computational chemistry to compute the atomic charge distribution of a molecule in order to provide information about its chemical properties. The method is based on the partitioning of space into non-overlapping atomic areas modelled as Voronoi cells and then computing the deformation density within those cells (i.e. the extent to which electron density differs from that of an unbonded atom). The VDD charge Q_A of atom A is computed as the (numerical) integral of the deformation density ∆ρ(r) = ρ(r) – Σ_Bρ_B(r) associated with the formation of the molecule from its atoms over the volume of the Voronoi cell of atom A:

[math]\displaystyle{ Q_A=-\int\limits_{\text{Voronoi cell }A}\Big(\rho (\mathbf{r})-\sum_B \rho_B (\mathbf{r} )\Big) d \mathbf{r} }[/math]

The Voronoi cell of atom A is defined as the compartment of space bounded by the bond midplanes on and perpendicular to all bond axes between nucleus A and its neighboring nuclei (cf. the Wigner–Seitz cells in crystals). The Voronoi cell of atom A is therefore the region of space closer to nucleus A than to any other nucleus. Furthermore, ρ(r) is the electron density of the molecule and Σ_Bρ_B(r) the superposition of atomic densities ρ_B of a fictitious promolecule without chemical interactions that is associated with the situation in which all atoms are neutral.

Note that an atomic charge is not a physical observable. Nevertheless, it has been proven a useful means to compactly describe and analyze the electron density distribution in a molecule, which is important for understanding the behavior of the latter. In this connection, it is an asset of VDD atomic charges Q_A that they have a rather straightforward and transparent interpretation. Instead of measuring the amount of charge associated with a particular atom A, Q_A directly monitors how much charge flows, due to chemical interactions, out of (Q_A > 0) or into (Q_A < 0) the Voronoi cell of atom A, that is, the region of space that is closer to nucleus A than to any other nucleus.

See also

• Partial charge