Biology:LeuA-Halobacteria RNA motif
leuA-Halobacteria | |
---|---|
![]() Consensus secondary structure and sequence conservation of leuA-Halobacteria RNA | |
Identifiers | |
Symbol | leuA-Halobacteria |
Rfam | RF03001 |
Other data | |
RNA type | Cis-reg |
SO | 0005836 |
PDB structures | PDBe |
The leuA-Halobacteria RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] leuA-Halobacteria motifs are found in Halobacteriaceae, a lineage of archaea.
leuA-Halobacteria motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes. Specifically they are upstream of genes encoding 2-isopropylmalate synthase and related genes, which participate in the synthesis of branched-chain amino acids. In bacteria, genes related to leucine are known to be regulated either by a short open reading frame known as the Leucine operon leader, or by T-boxes. In the leucine operon leader, a short ORF upstream of the regulated gene contains many leucine codons. When leucine levels are low, ribosomal stalling during the translation of these codons leads to a changed secondary structure that modifies gene expression. T-boxes measure cellular concentrations of leucine (or other amino acids) by binding uncharged leucine-tRNAs; low levels of leucine results in few tRNAs that are charged with leucine adducts. However, no specific evidence exists to suggest that leuA-Halobacteria motif RNAs function using these mechanisms. In addition, as of 2018, no mechanism is known for the regulation of leucine biosynthesis genes in archaea.
References
- ↑ "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. October 2017. doi:10.1093/nar/gkx699. PMID 28977401.
![]() | Original source: https://en.wikipedia.org/wiki/LeuA-Halobacteria RNA motif.
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