Biology:ACAD9
 Generic protein structure example |
Acyl-CoA dehydrogenase family member 9, mitochondrial is an enzyme that in humans is encoded by the ACAD9 gene.[1][2] Mitochondrial Complex I Deficiency with varying clinical manifestations has been associated with mutations in ACAD9.[3]
Structure
The ACAD9 gene contains an open reading frame of 1866 base pairs; this gene encodes a protein with 621 amino acid residues. Alignment of the ACAD9 protein sequence with that of other human ACAD proteins showed that ACAD-9 protein displays 46–27% identity, and 56–38% similarity with the eight members of the ACAD family, including ACADVL, ACADS, ACADM, ACADL, IVD, GCD, ACADSB, and ACD8. The calculated molecular weight of the ACAD9 is 68.8 kDa.[1]
Function
The ACAD9 enzyme catalyzes a crucial step in fatty acid beta-oxidation by forming a C2-C3 trans-double bond in the fatty acid. LVCAD is specific to very long-chain fatty acids, typically C16-acylCoA and longer.[4] It has been observed that ACAD9 can catalyze acyl-CoAs with very long chains. The specific activity of ACAD9 towards palmitoyl-CoA (C16:0) is three times higher than that towards stearoyl-CoA (C18:0). ACAD-9 has little activity on n-octanoyl-CoA (C8:0), n-butyryl-CoA (C4:0) or isovaleryl-CoA (C5:0).[1]
In contrast with ACADVL, ACAD9 is also involved in assembly of the oxidative phosphorylation complex I. ACAD9 binds complex I assembly factors NDUFAF1 and Ecsit and is specifically required for the assembly of complex I. Furthermore, ACAD9 mutations result in complex I deficiency and not in disturbed long-chain fatty acid oxidation.[5]
Clinical significance
Mutations in the ACAD9 gene are associated with mitochondrial complex I deficiency type 20, which is autosomal recessive. This deficiency is the most common enzymatic defect of the oxidative phosphorylation disorders.[6][7] Mitochondrial complex I deficiency shows extreme genetic heterogeneity and can be caused by mutation in nuclear-encoded genes or in mitochondrial-encoded genes. There are no obvious genotype–phenotype correlations, and inference of the underlying basis from the clinical or biochemical presentation is difficult, if not impossible.[8] However, the majority of cases are caused by mutations in nuclear-encoded genes.[9][10] It causes a wide range of clinical disorders, ranging from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, nonspecific encephalopathy, hypertrophic cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease.[11]
A few cases specific to ACAD9 have been reported. Some cases presented with episodic liver dysfunction during otherwise mild illnesses or cardiomyopathy, along with chronic neurologic dysfunction. Brain findings were notable for generalized edema with diffuse ventricular compression, acute left tonsillar herniation, and diffuse multifocal acute damage in the hippocampus. In addition, some abnormalities consistent with nonacute changes were seen, including a subacute right cerebellar hemispheric infarct and reduction in the number of neurons in several areas.[12] In one patient, whose clinical manifestations of hypotonia, cardiomyopathy, and lactic acidosis, a vigorous treatment with riboflavin allowed the individual to have normal psychomotor development and no cognitive impairment at 5 years of age.[13] Exercise-induced rhabdomyolysis, mitochondrial encephalomyopathy, and hyperplasia in liver, cardiac myocytes, skeletal muscle, and renal tubules have also been observed in patients with ACAD9 mutations.[14][15][3]
Interactions
ACAD9 is part of the mitochondrial complex I assembly (MCIA) complex. The complex comprises at least TMEM126B, NDUFAF1, ECSIT, and ACAD9, which interacts directly with NDUFAF1 and ECSIT.[5]
References
- ↑ 1.0 1.1 1.2 "Cloning and functional characterization of ACAD-9, a novel member of human acyl-CoA dehydrogenase family". Biochemical and Biophysical Research Communications 297 (4): 1033–42. October 2002. doi:10.1016/S0006-291X(02)02336-7. PMID 12359260.
- ↑ "Entrez Gene: ACAD9 acyl-Coenzyme A dehydrogenase family, member 9". https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=28976.
- ↑ 3.0 3.1 "Neonatal multiorgan failure due to ACAD9 mutation and complex I deficiency with mitochondrial hyperplasia in liver, cardiac myocytes, skeletal muscle, and renal tubules". Human Pathology 49: 27–32. March 2016. doi:10.1016/j.humpath.2015.09.039. PMID 26826406.
- ↑ "Purification of human very-long-chain acyl-coenzyme A dehydrogenase and characterization of its deficiency in seven patients". The Journal of Clinical Investigation 95 (6): 2465–73. June 1995. doi:10.1172/JCI117947. PMID 7769092.
- ↑ 5.0 5.1 "Acyl-CoA dehydrogenase 9 is required for the biogenesis of oxidative phosphorylation complex I". Cell Metabolism 12 (3): 283–94. September 2010. doi:10.1016/j.cmet.2010.08.002. PMID 20816094.
- ↑ "NDUFS6 mutations are a novel cause of lethal neonatal mitochondrial complex I deficiency". The Journal of Clinical Investigation 114 (6): 837–45. September 2004. doi:10.1172/JCI20683. PMID 15372108.
- ↑ "De novo mutations in the mitochondrial ND3 gene as a cause of infantile mitochondrial encephalopathy and complex I deficiency". Annals of Neurology 55 (1): 58–64. January 2004. doi:10.1002/ana.10787. PMID 14705112.
- ↑ "Molecular diagnosis in mitochondrial complex I deficiency using exome sequencing". Journal of Medical Genetics 49 (4): 277–83. April 2012. doi:10.1136/jmedgenet-2012-100846. PMID 22499348. https://epub.ub.uni-muenchen.de/21895/1/oa_21895.pdf.
- ↑ "Isolated complex I deficiency in children: clinical, biochemical and genetic aspects". Human Mutation 15 (2): 123–34. 2000. doi:10.1002/(SICI)1098-1004(200002)15:2<123::AID-HUMU1>3.0.CO;2-P. PMID 10649489.
- ↑ "Respiratory chain complex I deficiency". American Journal of Medical Genetics 106 (1): 37–45. 2001. doi:10.1002/ajmg.1397. PMID 11579423.
- ↑ "Human complex I deficiency: clinical spectrum and involvement of oxygen free radicals in the pathogenicity of the defect". Biochimica et Biophysica Acta (BBA) - Bioenergetics 1364 (2): 271–86. May 1998. doi:10.1016/s0005-2728(98)00033-4. PMID 9593934.
- ↑ "A new genetic disorder in mitochondrial fatty acid beta-oxidation: ACAD9 deficiency". American Journal of Human Genetics 81 (1): 87–103. July 2007. doi:10.1086/519219. PMID 17564966.
- ↑ "Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency". Nature Genetics 42 (12): 1131–4. December 2010. doi:10.1038/ng.706. PMID 21057504.
- ↑ "Mitochondrial encephalomyopathy due to a novel mutation in ACAD9". JAMA Neurology 70 (9): 1177–9. September 2013. doi:10.1001/jamaneurol.2013.3197. PMID 23836383.
- ↑ "Another "Complex" Case: Complex I Deficiency Secondary to Acyl-CoA Dehydrogenase 9 Mutation". The American Journal of the Medical Sciences 350 (5): 423–4. November 2015. doi:10.1097/MAJ.0000000000000570. PMID 26445304.
External links
- Human ACAD9 genome location and ACAD9 gene details page in the UCSC Genome Browser.
Further reading
- "Severe defect in mitochondrial complex I assembly with mitochondrial DNA deletions in ACAD9-deficient mild myopathy". Muscle & Nerve 55 (6): 919–922. June 2017. doi:10.1002/mus.25262. PMID 27438479.
- "Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns". Genome Biology 8 (8): R154. 2008. doi:10.1186/gb-2007-8-8-r154. PMID 17672918.
- "A new genetic disorder in mitochondrial fatty acid beta-oxidation: ACAD9 deficiency". American Journal of Human Genetics 81 (1): 87–103. July 2007. doi:10.1086/519219. PMID 17564966.
- "Acyl-CoA dehydrogenase 9 (ACAD 9) is the long-chain acyl-CoA dehydrogenase in human embryonic and fetal brain". Biochemical and Biophysical Research Communications 346 (1): 33–7. July 2006. doi:10.1016/j.bbrc.2006.05.088. PMID 16750164.
- "Human acyl-CoA dehydrogenase-9 plays a novel role in the mitochondrial beta-oxidation of unsaturated fatty acids". The Journal of Biological Chemistry 280 (37): 32309–16. September 2005. doi:10.1074/jbc.M504460200. PMID 16020546.
- "High activity of fatty acid oxidation enzymes in human placenta: implications for fetal-maternal disease". Journal of Inherited Metabolic Disease 26 (4): 385–92. 2004. doi:10.1023/A:1025163204165. PMID 12971426.
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