Biology:Sulfide:quinone reductase

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Sulfide:quinone reductase
Identifiers
EC number1.8.5.4
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum

Sulfide:quinone reductase (SQR , EC 1.8.5.4) is an enzyme with systematic name sulfide:quinone oxidoreductase.[1][2][3][4][5][6] This enzyme catalyses the following chemical reaction

n HS− + n quinone [math]\displaystyle{ \rightleftharpoons }[/math] polysulfide + n quinol

SQR contains FAD. Ubiquinone, plastoquinone or menaquinone can act as acceptor in different species.

The Enzyme Commission (EC) number for SQR is 1.8.5.’. The number indicates that the protein is an oxidoreductase (indicated by 1). The oxidoreductase reacts with a sulfur molecule (sulfide in this case) to donate electrons (indicated by 8). The donated electrons are accepted by a quinone (indicated by 5).[7] Multiple sulfide:quinone oxidoreductases are found in bacteria, archaea, and eukaryotes, but the function highlighted in the EC numbers 1.8.5.’. are all constant except that the final digit with is 4 in bacteria and 8 in eukaryotic mitochondria.[8][7]

Crystalline structure

The SQR in Aquifex aeolicus is composed of three subunits with a negatively charged hydrophilic side exposed to the periplasmic space and a hydrophobic region that integrates into the cell’s plasma membrane. The protein's active site is composed of an FAD cofactor covalently linked by a thioether bond to the enzyme. On the si side of the FAD the sulfide reacts and donates its electrons to FAD, while the re side of FAD is connected to a disulfide bridge and donates electrons to the quinone. 2, 3 The quinone is surrounded by Phe-385 and Ile-346. Both amino acids are located in the hydrophobic region of the plasma membrane and are conserved among all sulfide: quinone oxidoreductases.[9]

Reaction Pathway

In A. aeolicus, SQR is an integral monotopic protein, so it penetrates into the hydrophobic region of the plasma membrane. The SQR reaction takes place in two half reactions, sulfide oxidation and quinone reduction. The active site of SQR is composed of a region that interacts with the periplasmic space and sulfide connected by a FAD cofactor and a trisulfide bridge to a quinone. FAD receives two electrons from sulfide and transfers the electrons one at time to the quinone. The amino acids surrounding the quinone are all hydrophobic. Also, there is a highly conserved region of uncharged amino acids, phenylalanine and isoleucine, that surround the benzene ring of the quinone.[10]

SQR is a member of the flavoprotein disulfide reductase (FDR) superfamily. FDRs are typically characterized as being dimeric or two subunit proteins, but sulfide quinone oxidoreductase is a trimeric protein. The main purpose of SQR is to detoxify sulfide. Sulfide is a toxic chemical that inhibits enzymatic reactions, especially those with metal cofactors. Most notably, sulfide inhibits cytochrome oxidase found in the electron transport chain. SQR oxidizes sulfide and produces non-toxic products.[11]

Role in metabolism

SQR is an integral protein that enters cells' plasma membrane (or inner mitochondrial membrane).[12] The plasma membrane is the site of the electron transport chain for respiration.[13] The electron transport chain depends on two factors: 1) ability of a membrane to store an ion gradient; 2) the ability of an organism to pump hydrogen ions against a gradient (from low to high concentration).[12] SQR enhances the formation of an ion gradient by donating two electrons to the quinone.[13] Once the electrons are in the quinone, they are transported to the quinone pool.[12] The quinone pool is located inside the hydrophobic region of the plasma membrane and plays a role in transporting hydrogen ions to the periplasm. From the quinone pool, electrons travel to cytochrome c oxidase where oxygen is waiting as the final electron acceptor.[12][13]

Electrons from carbon sources react in a similar fashion to those in sulfide. Two main differences separate the carbon pathway and the sulfur pathway: 1) sulfur (sulfide in this case) skips glycolysis and the tricarboxylic acid cycle (TCA), while the carbon pathway requires both cycles to store electrons in NADHl[10][14] 2) electrons from sulfide are donated to SQR, while the electrons from NADH are donated to the NADH:quinone oxidoreductase.[14] In both cases, the electrons are shuttled to the quinone pool, then to cytochrome c oxidase where the final electron acceptor is waiting.[14] SQR is such a conserved protein because SQR enhances energy conservation and synthesizes ATP when carbon sources are depleted, but the main incentive to conserve SQR is to detoxify sulfide.[10][14]

A 2021 study found that increased SQR levels were protective against hypoxia in squirrels and mice.[15]

References

  1. ↑ "Purification and characterization of sulfide-quinone reductase, a novel enzyme driving anoxygenic photosynthesis in Oscillatoria limnetica". The Journal of Biological Chemistry 269 (8): 5705–11. February 1994. doi:10.1016/S0021-9258(17)37518-X. PMID 8119908. 
  2. ↑ "Sulfide oxidation in the phototrophic sulfur bacterium Chromatium vinosum". Archives of Microbiology 170 (1): 59–68. July 1998. doi:10.1007/s002030050615. PMID 9639604. 
  3. ↑ "Sulfide:quinone oxidoreductase in membranes of the hyperthermophilic bacterium Aquifex aeolicus (VF5)". Archives of Microbiology 173 (4): 233–44. April 2000. doi:10.1007/s002030000135. PMID 10816041. 
  4. ↑ "Structural and functional insights into sulfide:quinone oxidoreductase". Biochemistry 48 (24): 5613–22. June 2009. doi:10.1021/bi9003827. PMID 19438211. 
  5. ↑ "Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans: insights into sulfidotrophic respiration and detoxification". Journal of Molecular Biology 398 (2): 292–305. April 2010. doi:10.1016/j.jmb.2010.03.018. PMID 20303979. 
  6. ↑ "Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase". Biochimica et Biophysica Acta (BBA) - Biomembranes 1798 (11): 2114–23. November 2010. doi:10.1016/j.bbamem.2010.07.033. PMID 20691146. 
  7. ↑ 7.0 7.1 "BRENDA - Information on EC 1.8.5.4 - bacterial sulfide:quinone reductase". https://www.brenda-enzymes.org/enzyme.php?ecno=1.8.5.4. 
  8. ↑ "BRENDA - Information on EC 1.8.5.8 - eukaryotic sulfide quinone oxidoreductase". https://www.brenda-enzymes.org/enzyme.php?ecno=1.8.5.8#:~:text=External%20Links-,Information%20on%20EC,5.8%20-%20eukaryotic%20sulfide%20quinone%20oxidoreductase&text=Contains%20FAD.,in%20the%20metabolism%20of%20sulfide.. 
  9. ↑ Brito, José A.; Sousa, Filipa L.; Stelter, Meike; Bandeiras, Tiago M.; Vonrhein, Clemens; Teixeira, Miguel; Pereira, Manuela M.; Archer, Margarida (2009-06-23). "Structural and Functional Insights into Sulfide:Quinone Oxidoreductase". Biochemistry 48 (24): 5613–5622. doi:10.1021/bi9003827. ISSN 0006-2960. PMID 19438211. https://pubs.acs.org/doi/pdf/10.1021/bi9003827. 
  10. ↑ 10.0 10.1 10.2 Marcia, Marco; Ermler, Ulrich; Peng, Guohong; Michel, Hartmut (2009-06-16). "The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration" (in en). Proceedings of the National Academy of Sciences 106 (24): 9625–9630. doi:10.1073/pnas.0904165106. ISSN 0027-8424. PMID 19487671. Bibcode: 2009PNAS..106.9625M. 
  11. ↑ Marcia, Marco; Langer, Julian D.; Parcej, David; Vogel, Vitali; Peng, Guohong; Michel, Hartmut (2010-11-01). "Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase" (in en). Biochimica et Biophysica Acta (BBA) - Biomembranes 1798 (11): 2114–2123. doi:10.1016/j.bbamem.2010.07.033. ISSN 0005-2736. PMID 20691146. 
  12. ↑ 12.0 12.1 12.2 12.3 van der Stel, Anne-Xander; Wösten, Marc M. S. M. (2019-07-30). "Regulation of Respiratory Pathways in Campylobacterota: A Review". Frontiers in Microbiology 10: 1719. doi:10.3389/fmicb.2019.01719. ISSN 1664-302X. PMID 31417516. 
  13. ↑ 13.0 13.1 13.2 Nübel, Tobias; Klughammer, Christof; Huber, Robert; Hauska, Günter; Schütz, Michael (2000-04-01). "Sulfide:quinone oxidoreductase in membranes of the hyperthermophilic bacterium Aquifex aeolicus (VF5)" (in en). Archives of Microbiology 173 (4): 233–244. doi:10.1007/s002030000135. ISSN 1432-072X. PMID 10816041. https://doi.org/10.1007/s002030000135. 
  14. ↑ 14.0 14.1 14.2 14.3 Kracke, Frauke; Vassilev, Igor; Krömer, Jens O. (2015-06-11). "Microbial electron transport and energy conservation – the foundation for optimizing bioelectrochemical systems". Frontiers in Microbiology 6: 575. doi:10.3389/fmicb.2015.00575. ISSN 1664-302X. PMID 26124754. 
  15. ↑ "Serendipitous discovery could lead to treatment for strokes, cardiac arrest" (in en). https://medicalxpress.com/news/2021-05-serendipitous-discovery-treatment-cardiac.html. 

External links



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