Biology:ENOD40
From HandWiki
| ENOD40 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
 A sequence logo for the ENOD40 peptide. | |||||||||
| Identifiers | |||||||||
| Symbol | ENOD40 | ||||||||
| Pfam | PF08247 | ||||||||
| InterPro | IPR013186 | ||||||||
| |||||||||
| ENOD40 | |
|---|---|
 ENOD40 secondary structure and sequence conservation | |
| Identifiers | |
| Symbol | ENOD40 |
| Rfam | RF01845 |
| Other data | |
| RNA type | Non-coding RNA |
| Domain(s) | Magnoliophyta |
| PDB structures | PDBe |
enod40, also known as early nodulin 40, is a gene found in flowering plants. The gene has characteristics of both protein and Non-coding RNA genes.[1] There is some evidence that the non-coding characteristics of this gene are more widely conserved than the protein coding sequences.[2] In soyabeans enod40 was found to be expressed during early stages of formation of nitrogen-fixing root nodules that are associated with symbiotic soil rhizobial bacteria.[3][4] The gene is also active in roots containing fungi forming phosphate-acquiring arbuscular mycorrhiza. [5] An interaction with a novel RNA-binding protein MtRBP1 (Medicago truncatula RNA-binding protein 1) investigated in the development of Root nodule suggests ENOD40 has a function of cytoplasmic relocalization of nuclear proteins.[6] In the study of non-legume plants, the over-expression of ENOD40 in transgenic Arabidopsis lines was observed a reduction of cell expansion.[7]
See also
References
- ↑ "enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth.". EMBO J 13 (21): 5099–5112. 1994. doi:10.1002/j.1460-2075.1994.tb06839.x. PMID 7957074.
- ↑ "Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants.". Nucleic Acids Res 35 (9): 3144–3152. 2007. doi:10.1093/nar/gkm173. PMID 17452360.
- ↑ "Characterization of GmENOD40, a gene showing novel patterns of cell-specific expression during soybean nodule development.". Plant J 3 (4): 573–585. 1993. doi:10.1046/j.1365-313X.1993.03040573.x. PMID 8220464.
- ↑ "Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development.". Mol Gen Genet 238 (1–2): 106–119. 1993. doi:10.1007/bf00279537. PMID 7683079.
- ↑ "Expression of early nodulin genes in alfalfa mycorrhizae indicates that signal transduction pathways used in forming arbuscular mycorrhizae and Rhizobium-induced nodules may be conserved.". Proc Natl Acad Sci U S A 94 (10): 5467–5472. 1997. doi:10.1073/pnas.94.10.5467. PMID 11038545. Bibcode: 1997PNAS...94.5467V.
- ↑ "Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula.". Plant Cell 16 (4): 1047–1059. 2004. doi:10.1105/tpc.019406. PMID 15037734.
- ↑ "Reduction of cell size induced by enod40 in Arabidopsis thaliana.". J Exp Bot 56 (412): 507–513. 2005. doi:10.1093/jxb/eri028. PMID 15557291.
Further reading
- "Translational and structural analysis of the shortest legume ENOD40 gene in Lupinus luteus.". Acta Biochim Pol 56 (1): 89–102. 2009. doi:10.18388/abp.2009_2520. PMID 19287803.
- "Medicago truncatula ENOD40-1 and ENOD40-2 are both involved in nodule initiation and bacteroid development.". J Exp Bot 58 (8): 2033–2041. 2007. doi:10.1093/jxb/erm072. PMID 17452749.
- "Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants.". Nucleic Acids Res 35 (9): 3144–3152. 2007. doi:10.1093/nar/gkm173. PMID 17452360.
- "Positional cloning identifies Lotus japonicus NSP2, a putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation.". DNA Res 13 (6): 255–265. 2006. doi:10.1093/dnares/dsl017. PMID 17244637.
- "ENOD40 Gene Expression and Cytokinin Responses in the Nonnodulating, Nonmycorrhizal (NodMyc) Mutant, Masym3, of Melilotus alba Desr.". Plant Signal Behav 2 (1): 33–42. 2007. doi:10.4161/psb.2.1.3734. PMID 19516966.
- "ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics.". J Exp Bot 57 (12): 3271–3282. 2006. doi:10.1093/jxb/erl089. PMID 16957021.
- "Analysis of promoter activity of the early nodulin Enod40 in Lotus japonicus.". Mol Plant Microbe Interact 18 (5): 414–427. 2005. doi:10.1094/MPMI-18-0414. PMID 15915640.
- "Modification of soybean sucrose synthase by S-thiolation with ENOD40 peptide A.". Biochem Biophys Res Commun 325 (3): 864–870. 2004. doi:10.1016/j.bbrc.2004.10.100. PMID 15541370.
- "Phytohormonal responses in enod40-overexpressing plants of Medicago truncatula and rice.". Physiol. Plant. 120 (1): 132–139. 2004. doi:10.1111/j.0031-9317.2004.0208.x. PMID 15032885.
- "Identification and characterization of a Zea mays line carrying a transposon-tagged ENOD40.". Biochim Biophys Acta 1629 (1–3): 84–91. 2003. doi:10.1016/j.bbaexp.2003.08.004. PMID 14522083.
- "Expression of ENOD40 during tomato plant development.". Planta 218 (1): 42–49. 2003. doi:10.1007/s00425-003-1081-9. PMID 14508686.
- "Comparison of nodule induction in legume and actinorhizal symbioses: the induction of actinorhizal nodules does not involve ENOD40.". Mol Plant Microbe Interact 16 (9): 808–816. 2003. doi:10.1094/MPMI.2003.16.9.808. PMID 12971604.
- "Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean.". Nucleic Acids Res 31 (17): 5003–5015. 2003. doi:10.1093/nar/gkg721. PMID 12930950.
- Larsen K (2003). "Molecular cloning and characterization of a cDNA encoding a ryegrass (Lolium perenne) ENOD40 homologue.". J Plant Physiol 160 (6): 675–687. doi:10.1078/0176-1617-00962. PMID 12872490.
- "The endosymbiosis-induced genes ENOD40 and CCS52a are involved in endoparasitic-nematode interactions in Medicago truncatula.". Mol Plant Microbe Interact 15 (10): 1008–1013. 2002. doi:10.1094/MPMI.2002.15.10.1008. PMID 12437298.
- "The white clover enod40 gene family. Expression patterns of two types of genes indicate a role in vascular function.". Plant Physiol 129 (3): 1107–1118. 2002. doi:10.1104/pp.010916. PMID 12114565.
- "Soybean ENOD40 encodes two peptides that bind to sucrose synthase.". Proc Natl Acad Sci U S A 99 (4): 1915–1920. 2002. doi:10.1073/pnas.022664799. PMID 11842184. Bibcode: 2002PNAS...99.1915R.
- "Medicago truncatula plants overexpressing the early nodulin gene enod40 exhibit accelerated mycorrhizal colonization and enhanced formation of arbuscules.". Proc Natl Acad Sci U S A 98 (26): 15366–15371. 2001. doi:10.1073/pnas.251491698. PMID 11752473. Bibcode: 2001PNAS...9815366S.
- "Analysis of ENOD40 expression in alb1, a symbiotic mutant of Lotus japonicus that forms empty nodules with incompletely developed nodule vascular bundles.". Mol Gen Genet 264 (4): 402–410. 2000. doi:10.1007/s004380000330. PMID 11129043.
- "Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex.". Mol Cell Biol 21 (1): 354–366. 2001. doi:10.1128/MCB.21.1.354-366.2001. PMID 11113209.
- "Lotus japonicus contains two distinct ENOD40 genes that are expressed in symbiotic, nonsymbiotic, and embryonic tissues.". Mol Plant Microbe Interact 13 (9): 987–994. 2000. doi:10.1094/MPMI.2000.13.9.987. PMID 10975655.
- "Alteration of enod40 expression modifies medicago truncatula root nodule development induced by sinorhizobium meliloti". Plant Cell 11 (10): 1953–1966. 1999. doi:10.1105/tpc.11.10.1953. PMID 10521525.
- "Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules.". Plant J 18 (2): 121–129. 1999. doi:10.1046/j.1365-313X.1999.00432.x. PMID 10363365.
- "The soybean ENOD40(2) promoter is active in Arabidopsis thaliana and is temporally and spatially regulated.". Plant Mol Biol 39 (1): 177–181. 1999. doi:10.1023/A:1006146627301. PMID 10080720.
- "Patterns of ENOD40 gene expression in stem-borne nodules of Sesbania rostrata.". Plant Mol Biol 37 (1): 67–76. 1998. doi:10.1023/A:1005925607793. PMID 9620265.
- "Studying early nodulin gene ENOD40 expression and induction by nodulation factor and cytokinin in transgenic alfalfa.". Plant Physiol 116 (1): 53–68. 1998. doi:10.1104/pp.116.1.53. PMID 9449836.
- "enod40 induces dedifferentiation and division of root cortical cells in legumes.". Proc Natl Acad Sci U S A 94 (16): 8901–8906. 1997. doi:10.1073/pnas.94.16.8901. PMID 11038563. Bibcode: 1997PNAS...94.8901C.
- "Expression of the early nodulin, ENOD40, in soybean roots in response to various lipo-chitin signal molecules.". Plant J 10 (1): 23–32. 1996. doi:10.1046/j.1365-313X.1996.10010023.x. PMID 8758977.
- "Phaseolus ENOD40 is involved in symbiotic and non-symbiotic organogenetic processes: expression during nodule and lateral root development.". Plant Mol Biol 30 (3): 403–417. 1996. doi:10.1007/BF00049320. PMID 8605294.
- "enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth.". EMBO J 13 (21): 5099–5112. 1994. doi:10.1002/j.1460-2075.1994.tb06839.x. PMID 7957074.
- "Comparison of soybean and pea ENOD40 cDNA clones representing genes expressed during both early and late stages of nodule development.". Plant Mol Biol 26 (1): 487–493. 1994. doi:10.1007/BF00039559. PMID 7948896.
External links
- ENTREZ page for Lotus japonicus ENOD40
- Page for Early nodulin 40 at Rfam
- NONCODE entry for ENOD40 RNA
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