Category:Molecular dynamics

• Molecular dynamics (physics)

A

• Accessible surface area (physics)
• Andersen thermostat (physics)
• Anton (computer) (engineering)

B

• Berendsen thermostat (physics)
• Biskit (software)

C

• Car–Parrinello molecular dynamics (physics)
• Cell lists (physics)
• Combining rules (physics)
• Constraint (computational chemistry) (physics)

D

• D. E. Shaw Research (physics)

E

• Energy drift (computing)

F

• Flying ice cube (physics)

I

• Implicit solvation (physics)

L

• Local Elevation (physics)
• Local elevation (physics)

M

• Metadynamics (physics)
• Molecular modeling on GPUs (physics)

N

• Nosé–Hoover thermostat (physics)

O

• OPLS (physics)

P

• Parallel tempering (computing)
• Path integral molecular dynamics (physics)
• Path integral molecular dynamics (computing)
• Periodic boundary conditions (computing)
• Poisson–Boltzmann equation (physics)
• Protein Local Optimization Program (software)

R

• Reversible reference system propagation algorithm (physics)
• RIKEN MDGRAPE-3 (computing)
• Rotational correlation time (physics)

S

• Screened Coulomb Potentials Implicit Solvent Model (physics)
• Screened Coulomb potentials implicit solvent model (physics)
• Shifted force method (physics)
• Surface hopping (physics)

T

• Transition path sampling (physics)

U

• Umbrella sampling (physics)
• Universal force field (physics)

V

• Verlet list (physics)