Chemistry:SN2 reaction

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Short description: Substitution reaction where bonds are broken and formed simultaneously


Ball-and-stick representation of the SN2 reaction of CH3SH with CH3I yielding dimethylsulfonium. Note that the attacking group attacks from the backside of the leaving group

Bimolecular nucleophilic substitution (SN2) is a type of reaction mechanism that is common in organic chemistry. In the SN2 reaction, a strong nucleophile forms a new bond to an sp3-hybridised carbon via a backside attack, all while the leaving group detaches from the reaction center in a concerted (i.e. simultaneous) fashion.

The name SN2 refers to the Hughes-Ingold symbol of the mechanism: "SN" indicates that the reaction is a nucleophilic substitution, and "2" that it proceeds via a bimolecular mechanism, which means both the reacting species are involved in the rate-determining step. What distinguishes SN2 from the other major type of nucleophilic substitution, the SN1 reaction, is that the displacement of the leaving group, which is the rate-determining step, is separate from the nucleophilic attack in SN1.

The SN2 reaction can be considered as an analogue of the associative substitution in the field of inorganic chemistry.

Reaction mechanism

The reaction most often occurs at an aliphatic sp3 carbon center with an electronegative, stable leaving group attached to it, which is frequently a halogen (often denoted X). The formation of the C–Nu bond, due to attack by the nucleophile (denoted Nu), occurs concertedly with the breakage of the C–X bond. The reaction occurs through a transition state in which the reaction center is pentacoordinate and approximately sp2-hybridised.

SN2 reaction.svg

The SN2 reaction can be viewed as a HOMO–LUMO interaction between the nucleophile and substrate. The reaction occurs only when the occupied lone pair orbital of the nucleophile donates electrons to the unfilled σ* antibonding orbital between the central carbon and the leaving group. Throughout the course of the reaction, a p orbital forms at the reaction center as the result of the transition from the molecular orbitals of the reactants to those of the products.[1]

SN2 reaction orbitals and transition state.svg

To achieve optimal orbital overlap, the nucleophile attacks 180° relative to the leaving group, resulting in the leaving group being pushed off the opposite side and the product formed with inversion of tetrahedral geometry at the central atom.

For example, the synthesis of macrocidin A, a fungal metabolite, involves an intramolecular ring closing step via an SN2 reaction with a phenoxide group as the nucleophile and a halide as the leaving group, forming an ether.[2] Reactions such as this, with an alkoxide as the nucleophile, are known as the Williamson ether synthesis.

Synthesis of macrocidin A via SN2 etherification.

If the substrate that is undergoing SN2 reaction has a chiral centre, then inversion of configuration (stereochemistry and optical activity) may occur; this is called the Walden inversion. For example, 1-bromo-1-fluoroethane can undergo nucleophilic attack to form 1-fluoroethan-1-ol, with the nucleophile being an HO− group. In this case, if the reactant is levorotatory, then the product would be dextrorotatory, and vice versa.[3]

SN2 mechanism of 1-bromo-1-fluoroethane with one of the carbon atoms being a chiral centre.

Factors affecting the rate of the reaction

The four factors that affect the rate of the reaction, in the order of decreasing importance, are:[4][5]

Substrate

The substrate plays the most important part in determining the rate of the reaction. For SN2 reaction to occur more quickly, the nucleophile must easily access the sigma antibonding orbital between the central carbon and leaving group.

SN2 occurs more quickly with substrates that are more sterically accessible at the central carbon, i.e. those that do not have as much sterically hindering substituents nearby. Methyl and primary substrates react the fastest, followed by secondary substrates. Tertiary substrates do not react via the SN2 pathway, as the greater steric hindrance between the nucleophile and nearby groups of the substrate will leave the SN1 reaction to occur first.

Steric effects on SN2 reactivity.svg

Substrates with adjacent pi C=C systems can favor both SN1 and SN2 reactions. In SN1, allylic and benzylic carbocations are stabilized by delocalizing the positive charge. In SN2, however, the conjugation between the reaction centre and the adjacent pi system stabilizes the transition state. Because they destabilize the positive charge in the carbocation intermediate, electron-withdrawing groups favor the SN2 reaction. Electron-donating groups favor leaving-group displacement and are more likely to react via the SN1 pathway.[1]

Benzylic chloride nucleophilic substitution.svg

Nucleophile

Like the substrate, steric hindrance affects the nucleophile's strength. The methoxide anion, for example, is both a strong base and nucleophile because it is a methyl nucleophile, and is thus very much unhindered. tert-Butoxide, on the other hand, is a strong base, but a poor nucleophile, because of its three methyl groups hindering its approach to the carbon. Nucleophile strength is also affected by charge and electronegativity: nucleophilicity increases with increasing negative charge and decreasing electronegativity. For example, OH− is a better nucleophile than water, and I− is a better nucleophile than Br− (in polar protic solvents). In a polar aprotic solvent, nucleophilicity increases up a column of the periodic table as there is no hydrogen bonding between the solvent and nucleophile; in this case nucleophilicity mirrors basicity. I− would therefore be a weaker nucleophile than Br− because it is a weaker base. Verdict - A strong/anionic nucleophile always favours SN2 manner of nucleophillic substitution.

Leaving group

Good leaving groups on the substrate lead to faster SN2 reactions. A good leaving group must be able to stabilize the electron density that comes from breaking its bond with the carbon center. This leaving group ability trend corresponds well to the pKa of the leaving group's conjugate acid (pKaH); the lower its pKaH value, the faster the leaving group is displaced.

Leaving groups that are neutral, such as water, alcohols (R–OH), and amines (R–NH
2), are good examples because of their positive charge when bonded to the carbon center prior to nucleophilic attack. Halides (Cl−
, Br−
, and I−
), with the exception of F−
), serve as good anionic leaving groups because electronegativity stabilizes additional electron density; the fluoride exception is due to its strong bond to carbon.

Leaving group reactivity of alcohols can be increased with sulfonates, such as tosylate (−
OTs), triflate (−
OTf), and mesylate (−
OMs). Poor leaving groups include hydroxide (−
OH), alkoxides (−
OR), and amides (−
NR
2).

Alcohol to tosylate.svg

The Finkelstein reaction is one SN2 reaction in which the leaving group can also act as a nucleophile. In this reaction, the substrate has a halogen atom exchanged with another halogen. As the negative charge is more-or-less stabilized on both halides, the reaction occurs at equilibrium.

Finkelstein reaction example.svg

Solvent

The solvent affects the rate of reaction because solvents may or may not surround a nucleophile, thus hindering or not hindering its approach to the carbon atom.[6] Polar aprotic solvents, like tetrahydrofuran, are better solvents for this reaction than polar protic solvents because polar protic solvents will hydrogen bond to the nucleophile, hindering it from attacking the carbon with the leaving group. A polar aprotic solvent with low dielectric constant or a hindered dipole end will favour SN2 manner of nucleophilic substitution reaction. Examples: dimethylsulfoxide, dimethylformamide, acetone, etc. In parallel, solvation also has a significant impact on the intrinsic strength of the nucleophile, in which strong interactions between solvent and the nucleophile, found for polar protic solvents, furnish a weaker nucleophile. In contrast, polar aprotic solvents can only weakly interact with the nucleophile, and thus, are to a lesser extent able to reduce the strength of the nucleophile.[7][8]

Reaction kinetics

The rate of an SN2 reaction is second order, as the rate-determining step depends on the nucleophile concentration, [Nu−] as well as the concentration of substrate, [RX].[1]

r = k[RX][Nu−]

This is a key difference between the SN1 and SN2 mechanisms. In the SN1 reaction the nucleophile attacks after the rate-limiting step is over, whereas in SN2 the nucleophile forces off the leaving group in the limiting step. In other words, the rate of SN1 reactions depend only on the concentration of the substrate while the SN2 reaction rate depends on the concentration of both the substrate and nucleophile.[1]

It has been shown[9] that except in uncommon (but predictable cases) primary and secondary substrates go exclusively by the SN2 mechanism while tertiary substrates go via the SN1 reaction. There are two factors which complicate determining the mechanism of nucleophilic substitution reactions at secondary carbons:

  1. Many reactions studied are solvolysis reactions where a solvent molecule (often an alcohol) is the nucleophile. While still a second order reaction mechanistically, the reaction is kinetically first order as the concentration of the nucleophile–the solvent molecule, is effectively constant during the reaction. This type of reaction is often called a pseudo first order reaction.
  2. In reactions where the leaving group is also a good nucleophile (bromide for instance) the leaving group can perform an SN2 reaction on a substrate molecule. If the substrate is chiral, this inverts the configuration of the substrate before solvolysis, leading to a racemized product–the product that would be expected from an SN1 mechanism. In the case of a bromide leaving group in alcoholic solvent Cowdrey et al.[10] have shown that bromide can have an SN2 rate constant 100-250 times higher than the rate constant for ethanol. Thus, after only a few percent solvolysis of an enantiospecific substrate, it becomes racemic.

The examples in textbooks of secondary substrates going by the SN1 mechanism invariably involve the use of bromide (or other good nucleophile) as the leaving group have confused the understanding of alkyl nucleophilic substitution reactions at secondary carbons for 80 years[3]. Work with the 2-adamantyl system (SN2 not possible) by Schleyer and co-workers,[11] the use of azide (an excellent nucleophile but very poor leaving group) by Weiner and Sneen,[12][13] the development of sulfonate leaving groups (non-nucleophilic good leaving groups), and the demonstration of significant experimental problems in the initial claim of an SN1 mechanism in the solvolysis of optically active 2-bromooctane by Hughes et al.[14][3] have demonstrated conclusively that secondary substrates go exclusively (except in unusual but predictable cases) by the SN2 mechanism.

E2 competition

A common side reaction taking place with SN2 reactions is E2 elimination: the incoming anion can act as a base rather than as a nucleophile, abstracting a proton and leading to formation of the alkene. This pathway is favored with sterically hindered nucleophiles. Elimination reactions are usually favoured at elevated temperatures[15] because of increased entropy. This effect can be demonstrated in the gas-phase reaction between a phenolate and a simple alkyl bromide taking place inside a mass spectrometer:[16][17]

Competition experiment between SN2 and E2

With ethyl bromide, the reaction product is predominantly the substitution product. As steric hindrance around the electrophilic center increases, as with isobutyl bromide, substitution is disfavored and elimination is the predominant reaction. Other factors favoring elimination are the strength of the base. With the less basic benzoate substrate, isopropyl bromide reacts with 55% substitution. In general, gas phase reactions and solution phase reactions of this type follow the same trends, even though in the first, solvent effects are eliminated.

Roundabout mechanism

A development attracting attention in 2008 concerns a SN2 roundabout mechanism observed in a gas-phase reaction between chloride ions and methyl iodide with a special technique called crossed molecular beam imaging. When the chloride ions have sufficient velocity, the initial collision of it with the methyl iodide molecule causes the methyl iodide to spin around once before the actual SN2 displacement mechanism takes place.[18][19][20]

See also

References

  1. ↑ 1.0 1.1 1.2 1.3 Clayden, Jonathan; Greeves, Nick; Warren, Stuart (2012). Organic chemistry (2nd ed.). Oxford: Oxford University Press. p. 330. ISBN 978-0-19-927029-3. 
  2. ↑ Hasse, Robert; Schobert, Rainer (November 28, 2016). "Synthesis of the Bioherbicidal Fungus Metabolite Macrocidin A". Organic Letters 18 (24): 6352–6355. doi:10.1021/acs.orglett.6b03240. https://doi.org/10.1021/acs.orglett.6b03240. Retrieved December 30, 2023. 
  3. ↑ CURTIS, CLIFF. MURGATROYD, JASON. SCOTT, DAVE (2019). Edexcel international a level chemistry student book.. [Place of publication not identified]: EDEXCEL Limited. ISBN 978-1-292-24472-3. OCLC 1084791738. https://www.worldcat.org/oclc/1084791738. 
  4. ↑ Smith, Michael B.; March, Jerry (2007), Advanced Organic Chemistry: Reactions, Mechanisms, and Structure (6th ed.), New York: Wiley-Interscience, ISBN 978-0-471-72091-1, https://books.google.com/books?id=JDR-nZpojeEC&printsec=frontcover 
  5. ↑ Hamlin, Trevor A.; Swart, Marcel; Bickelhaupt, F. Matthias (2018). "Nucleophilic Substitution (SN2): Dependence on Nucleophile, Leaving Group, Central Atom, Substituents, and Solvent" (in en). ChemPhysChem 19 (11): 1315–1330. doi:10.1002/cphc.201701363. ISSN 1439-7641. PMID 29542853. 
  6. ↑ Hamlin, Trevor A.; van Beek, Bas; Wolters, Lando P.; Bickelhaupt, F. Matthias (2018). "Nucleophilic Substitution in Solution: Activation Strain Analysis of Weak and Strong Solvent Effects" (in en). Chemistry – A European Journal 24 (22): 5927–5938. doi:10.1002/chem.201706075. ISSN 1521-3765. PMID 29457865. 
  7. ↑ Hansen, Thomas; Roozee, Jasper C.; Bickelhaupt, F. Matthias; Hamlin, Trevor A. (4 February 2022). "How Solvation Influences the S N 2 versus E2 Competition". The Journal of Organic Chemistry 87 (3): 1805–1813. doi:10.1021/acs.joc.1c02354. PMID 34932346. 
  8. ↑ Vermeeren, Pascal; Hansen, Thomas; Jansen, Paul; Swart, Marcel; Hamlin, Trevor A.; Bickelhaupt, F. Matthias (December 2020). "A Unified Framework for Understanding Nucleophilicity and Protophilicity in the S N 2/E2 Competition". Chemistry – A European Journal 26 (67): 15538–15548. doi:10.1002/chem.202003831. PMID 32866336. 
  9. ↑ Absence of SN1 Involvement in the Solvolysis of Secondary Alkyl Compounds, T. J. Murphy, J. Chem. Educ.; 2009; 86(4) pp 519-24; (Article) doi: 10.1021/ed041p678
  10. ↑ W.A. Cowdrey; E.D. Hughes; C.K. Ingold; S. Masterman; A.D. Scott (1937). "Relation of Steric orientation to Mechanism in Substitution Involving Halogen Atoms and Simple or Substituted Hydroxyl Groups". J. Chem. Soc.: 1252–1271. doi:10.1039/JR9370001252. 
  11. ↑ The 2-Adamantyl System, a Standard for Limiting Solvolysis in a Secondary Substrate J. L. Fry, C. J. Lancelot, L. K. M. Lam, J. M Harris, R. C. Bingham, D. J. Raber, R. E. Hill, P. v. R. Schleyer, J. Am. Chem. Soc.,; 1970; 92, pp 1240-42 (Article); doi: 10.1021/ja00478a031
  12. ↑ A Clarification of the Mechanism of Solvolysis of 2-Octyl Sulfonates. Stereochemical Considerations; H. Weiner, R. A. Sneen, J. Am. Chem. Soc.,; 1965; 87 pp 287-91; (Article) doi: 10.1021/ja01080a026
  13. ↑ A Clarification of the Mechanism of Solvolysis of 2-Octyl Sulfonates. Kinetic Considerations; H. Weiner, R. A. Sneen, J. Am. Chem. Soc.; 1965; 87 pp 292-96; (Article) doi: 10.1021/ja01080a027
  14. ↑ Homogeneous Hydrolysis and Alcoholysis of β-n-Octyl halides, E. D. Hughes, C. K. Ingold, S. Masterman, J. Chem. Soc.; 1937; pp 1196–1201; (Article) doi: 10.1039/JR9370001196
  15. ↑ "Elimination Reactions Are Favored By Heat — Master Organic Chemistry". http://www.masterorganicchemistry.com/2012/09/10/elimination-reactions-are-favored-by-heat/. 
  16. ↑ Gas Phase Studies of the Competition between Substitution and Elimination Reactions Scott Gronert Accounts of Chemical Research; 2003; 36(11) pp 848 - 857; (Article) doi:10.1021/ar020042n
  17. ↑ The technique used is electrospray ionization and because it requires charged reaction products for detection the nucleophile is fitted with an additional sulfonate anionic group, non-reactive and well separated from the other anion. The product ratio of substitution and elimination product can be measured from the intensity their relative molecular ions.
  18. ↑ Imaging Nucleophilic Substitution Dynamics J. Mikosch, S. Trippel, C. Eichhorn, R. Otto, U. Lourderaj, J. X. Zhang, W. L. Hase, M. Weidemüller, and R. Wester Science 11 January 2008 319: 183-186 doi: 10.1126/science.1150238 (in Reports)
  19. ↑ PERSPECTIVES CHEMISTRY: Not So Simple John I. Brauman (11 January 2008) Science 319 (5860), 168. doi:10.1126/science.1152387
  20. ↑ Surprise From SN2 Snapshots Ion velocity measurements unveil additional unforeseen mechanism Carmen Drahl Chemical & Engineering News January 14, 2008 Volume 86, Number 2 p. 9 http://pubsapp.acs.org/cen/news/86/i02/8602notw1.html, video included



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