Retraction in academic publishing

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In academic publishing, a retraction is a mechanism by which a published paper in an academic journal is flagged for being seriously flawed to the extent that their results and conclusions can no longer be relied upon. Retracted articles are not removed from the published literature but marked as retracted. In some cases it may be necessary to remove an article from publication, such as when the article is clearly defamatory, violates personal privacy, is the subject of a court order, or might pose a serious health risk to the general public.[1]

Procedure

A retraction may be initiated by the editors of a journal, or by the author(s) of the papers (or their institution). Retractions are typically accompanied by a retraction notice written by the editors or authors explaining the reason for the retraction. Such notices may also include a note from the authors with apologies for the previous error and/or expressions of gratitude to persons who disclosed the error to the author.[2] Retractions must not be confused with small corrections in published articles.

There have been numerous examples of retracted scientific publications. Retraction Watch provides updates on new retractions, and discusses general issues in relation to retractions.[3][4]

History

A 2011 paper in the Journal of Medical Ethics attempted to quantify retraction rates in PubMed over time to determine if the rate was increasing, even while taking into account the increased number of overall publications occurring each year.[5] The author found that the rate of increase in retractions was greater than the rate of increase in publications. Moreover, the author notes the following:

"It is particularly striking that the number of papers retracted for fraud increased more than sevenfold in the 6 years between 2004 and 2009. During the same period, the number of papers retracted for a scientific mistake did not even double..." (p. 251).[5]

Although the author suggests that his findings may indeed indicate a recent increase in scientific fraud, he also acknowledges other possibilities. For example, increased rates of fraud in recent years may simply indicate that journals are doing a better job of policing the scientific literature than they have in the past. Furthermore, because retractions occur for a very small percentage of overall publications (fewer than 1 in 1,000 articles[6][7]), a few scientists who are willing to commit large amounts of fraud can highly impact retraction rates. For example, the author points out that Jan Hendrik Schön fabricated results in 15 retracted papers in the dataset he reviewed, all of which were retracted in 2002 and 2003, "so he alone was responsible for 56% of papers retracted for fraud in 2002—2003" (p 252).[5]

During the COVID-19 pandemic, academia had seen a quick increase in fast-track peer-review articles dealing with SARS-CoV-2 problems.[8] As a result, a number of papers have been retracted made "Retraction Tsunami"[9] due to quality and/or data issues, leading many experts to ponder not just the quality of peer review but also standards of retraction practices.[10]

Retracted studies may continue to be cited. This may happen in cases where scholars are unaware of the retraction, in particular when the retraction occurs long after the original publication.[11]

The number of journal articles being retracted had risen from about 1,600 in 2013 to 10,000 in 2023. Most of the retractions in 2023 were contributed by the Hindawi Journal.[12]

Alternative versions of retraction

Retraction with replacement

A low percentage of retracted papers can be due to unintentional error within the author(s) work. Rather than removing the entire article, retraction with replacement has been a new practice to help authors avoid being seen as dishonest for mistakes that were not purposefully done.[13] This method allows the author to fix their mistakes from the original paper, and submit an edited version to take the original paper’s place. The journal can decide to retract the original paper then upload the fixed version online, usually with a notice placed stating “Retraction and Replacement,” or “Correction,” on the article page. For example, JAMA will post the edited version with a retraction and replacement notice, along with a link to the original article, while Research Evaluation will use the term "correction" with a link posted on the updated article, referring to the old article.

Self-retraction

Self-retraction is a request from an author and/or co-authors to retract its own work from being published. Self-retraction by an author is recommended because once it gets retracted from the journal, then it can affect the author(s) because investigations can begin which will have an effect the author's reputation. If one retracts their own work on their terms, it would show more integrity and honesty as they are owning up to their own mistakes,[14] just like the authors mentioned in The Wall Street Journal have done . Scientists at times have been asked to retract their work even though their work is exact and bold; the root cause of the problem should be looked into to avoid retractions.[14] A system to distinguish papers from "good" and "bad" would be beneficial to researchers. This system may save the reputation of scientists and researchers. Most researchers publish honest work and sometimes simple mistakes happen to be overlooked by the peer review process. Retraction should not be for simple spelling errors, but for inaccurate, skewed, and fraudulent data. For example, today new technologies are being developed in a culture of transparency to align the opportunity to record false claims.[14] Another solution is for researchers to use a term “self-citation” since citations look identical therefore they are classified in databases.[14] Recommending a same database to evaluate the researchers own work can help lessen retractions.

Notable retractions

Retraction for error

  • 2013 - Study on the Mediterranean diet published in New England Journal of Medicine and widely covered by media was retracted due to unreported non-random assignments. This was part of a larger effort verifying proper randomization in thousands of studies by anesthesiologist John Carlisle, who found problems in about 2% of those analyzed.[6]
  • 2012 - Séralini affair - Article suggesting reported an increase in tumors among rats fed genetically modified corn and the herbicide RoundUp retracted due to criticism of experimental design. According to the editor of the journal, a "more in-depth look at the raw data revealed that no definitive conclusions can be reached with this small sample size".[15]
  • 2003 Retracted Science article on ecstasy. See Retracted article on neurotoxicity of ecstasy.

Retraction for fraud or misconduct

  • 2021 An article studying the open source community by Qiushi Wu and Kangjie Lu at the University of Minnesota was withdrawn after the Linux Foundation discovered that the researchers submitted patches for the Linux kernel with intentional bugs and without obtaining appropriate consent.[16][17]
  • 2020 On January 8, 2020, Russian journals retracted more than 800 articles after a large-scale investigation conducted by the Russian Academy of Sciences (RAS) following claims of unethical publications.[18]
  • 2018 On 11 April 2019, two articles on DNA damage by Abderrahmane Kaidi of the University of Bristol, one published in Science in 2010[19] and another in Nature in 2013,[20] were retracted following evidence of data fabrication.[21][22]
  • 2017 Five articles in the field of consumer behavior and marketing research, by Brian Wansink at Cornell University, came under scrutiny after peers pointed out inconsistencies in the data. Wansink had written a blog post about asking a graduate student to "salvage" conclusions. Cornell University launched an investigation, which determined in 2018 that Wansink had committed academic misconduct. Wansink resigned.[23][24][25] Wansink has since had 18 of his research papers retracted as similar issues were found in other publications.[26][27][28]
  • 2014 An article by Haruko Obokata et al. on STAP cells, a method of inducing a cell to become a stem cell, was proven to be falsified. Originally published in Nature, it was retracted later that year. It generated much controversy, and after an institutional investigation, one of the authors committed suicide.[29][30]
  • 2011 Eight journal articles authored by Duke University cancer researcher Anil Potti and others, which describe genomic signatures of cancer prognosis and predictors of response to cancer treatment, were retracted in 2011 and 2012. The retraction notices generally state that the results of the analyses described in the articles could not be reproduced. In November 2015, the Office of Research Integrity (ORI) found that Potti had engaged in research misconduct.[31]
  • 2010 A 1998 paper by Andrew Wakefield proposing that the MMR vaccine might cause autism, which was responsible for the MMR vaccine controversy, was retracted because "the claims in the original paper that children were "consecutively referred" and that investigations were "approved" by the local ethics committee have been proven to be false."[32][33][34]
  • 2009 Numerous papers written by Scott Reuben from 1996 to 2009 were retracted after it was discovered he never actually conducted any of the trials he claimed to have run.
  • 2007 Retraction of several articles written by social psychologist Jennifer Lerner and colleagues from journals including Personality and Social Psychology Bulletin and Biological Psychiatry.[35]
  • 2006 Retraction of Patient-specific embryonic stem cells derived from human SCNT blastocysts, written by Hwang Woo-Suk. Fabrications in the field of stem cell research led to 'indictment on embezzlement and bioethics law violations linked to faked stem cell research'.
  • 2003 Numerous articles with questionable data from physicist Jan Hendrik Schön were retracted from many journals, including both Science and Nature.
  • 2002 Retraction of announced discovery of elements 116 and 118. See Livermorium, Victor Ninov.
  • 1991 Thereza Imanishi-Kari, who worked with David Baltimore, published a 1986 article in the journal Cell on immunology, which showed unexpected results on how the immune system rearranges its genes to produce antibodies against antigens it encounters for the first time. Margot O'Toole, a postdoctoral researcher for Imanishi-Kari, claimed that she could not reproduce Imanishi-Kari's results and alleged that Imanishi-Kari had fabricated the data. After a major investigation, the paper was retracted when the National Institutes of Health concluded that data in the 1986 Imanishi-Kari article had been falsified. Five years later, in 1996, an expert panel appointed by the federal government found no evidence of scientific fraud and cleared Imanishi-Kari of misconduct, although the paper was not reinstated.[36]
  • 1982 John Darsee. Fabricated results in the Cardiac Research Laboratory of Eugene Braunwald at Harvard in the early 1980s. Initially thought to be brilliant by his boss. He was caught out by fellow researchers in the same laboratory.

Retraction for ethical violations

  • 2019 An article by Wendy Rogers (Macquarie University, Australia) and colleagues on BMJ Open called for the mass retraction of more than 400 scientific papers on organ transplantation, amid fears the organs were obtained unethically from Chinese prisoners.[37] Wendy Rogers said the journals, researchers and clinicians who used these studies were complicit in these methods of organ trafficking. According to the study, the transplant research community has failed to live up to the ethical standards for using organs from death row inmates that are still being published. These widespread unethical violations in research will cause many unpredictable consequences for science.[38] In 2019, PLOS ONE also retracted 21 articles related to this incident.[39][40]
  • 2017 The journal Liver International retracted a Chinese study of liver transplantation because 564 livers grafted in the course of the research over 4 years could not be traced. The experts pointed out that it was implausible a hospital could have so many freely donated livers for transplantation, given the small number of donors in China at the time.[41]

Retraction over data provenance

  • 2020 On 22 May 2020, during the COVID-19 pandemic, an article was published in The Lancet which claimed to find evidence, based on a database of 96032 COVID-19 patients, that hydroxychloroquine and chloroquine increase the chance of patients dying in hospital as well as the chance of ventricular arrhythmia.[42] Medical researchers and newspapers expressed suspicions about the validity of the data, provided by Surgisphere, which is founded by one of the authors of the study.[43] The article was formally retracted by 4 June 2020, on request by the lead author Mandeep Mehra.[44][42]

Retraction over public relations issues

  • 2016 On March 4, 2016, an article in PLOS ONE about the functioning of the human hand[45] was retracted due to outrage on social media over a reference to "Creator" inside the paper (#CreatorGate).[46]
  • 1896 Jose Rizal was said to have issued a letter of retraction regarding his novels and other published articles against the Roman Catholic Church, see José Rizal: Retraction controversy.

See also

References

  1. ↑ "Retraction guidelines" (in en). https://publicationethics.org/retraction-guidelines. 
  2. ↑ Vuong, Q.-H. (2020). "The limitations of retraction notices and the heroic acts of authors who correct the scholarly record: An analysis of retractions of papers published from 1975 to 2019". Learned Publishing 33 (2): 119–130. doi:10.1002/leap.1282. 
  3. ↑ Kleinert, Sabine (2009). "COPE's retraction guidelines". The Lancet 374 (9705): 1876–7. doi:10.1016/S0140-6736(09)62074-2. PMID 19962558. 
  4. ↑ Strauss, Stephen (April 7, 2011). "Searching for truth in published research". CBC News. http://www.cbc.ca/news/technology/story/2011/04/04/f-vp-strauss-truth-published-research.html. 
  5. ↑ 5.0 5.1 5.2 Steen, R. Grant (April 2011). "Retractions in the scientific literature: is the incidence of research fraud increasing?". Journal of Medical Ethics 37 (4): 249–253. doi:10.1136/jme.2010.040923. ISSN 1473-4257. PMID 21186208. https://pubmed.ncbi.nlm.nih.gov/21186208/. 
  6. ↑ 6.0 6.1 McCook, Alison (June 13, 2018). "Errors Trigger Retraction Of Study On Mediterranean Diet's Heart Benefits". https://www.npr.org/sections/health-shots/2018/06/13/619619302/errors-trigger-retraction-of-study-on-mediterranean-diets-heart-benefits. 
  7. ↑ "Two Cheers for the Retraction Boom" (in en-US). https://www.thenewatlantis.com/publications/two-cheers-for-the-retraction-boom. 
  8. ↑ Vuong, Quan-Hoang (2020-06-11). "Reform retractions to make them more transparent" (in en). Nature 582 (7811): 149. doi:10.1038/d41586-020-01694-x. ISSN 0028-0836. Bibcode: 2020Natur.582..149V. http://www.nature.com/articles/d41586-020-01694-x. 
  9. ↑ Heidary, Fatemeh; Gharebaghi, Reza (2021). "COVID-19 impact on research and publication ethics" (in en). Medical Hypothesis, Discovery & Innovation in Ophthalmology 10 (1): 1–4. doi:10.51329/mehdiophthal1414. ISSN 2322-3219. PMID 37641621. 
  10. ↑ Vuong, Q.-H. (2020). "Reform retractions to make them more transparent". Nature 582 (7811): 149. doi:10.1038/d41586-020-01694-x. Bibcode: 2020Natur.582..149V. 
  11. ↑ LaCroix, Travis; Geil, Anders; O'Connor, Cailin (2020). "The Dynamics of Retraction in Epistemic Networks". Philosophy of Science 88 (3): 415–438. doi:10.1086/712817. ISSN 0031-8248. https://www.journals.uchicago.edu/doi/abs/10.1086/712817. 
  12. ↑ Noorden, Richard Van (12 December 2023). "More than 10,000 research papers were retracted in 2023 — a new record". Nature. https://www.nature.com/articles/d41586-023-03974-8. 
  13. ↑ Marasović, Tea; Utrobiĉić, Ana; Maruŝić, Ana (2018-03-31). "Transparency of retracting and replacing articles" (in en). The Lancet 391 (10127): 1244–1245. doi:10.1016/S0140-6736(18)30487-2. 
  14. ↑ 14.0 14.1 14.2 14.3 Fanelli, Daniele (2016-03-22). "Set up a ‘self-retraction’ system for honest errors" (in en). Nature 531 (7595): 415–415. doi:10.1038/531415a. ISSN 0028-0836. 
  15. ↑ Séralini, Gilles-Eric; Clair, Emilie; Mesnage, Robin; Gress, Steeve; Defarge, Nicolas; Malatesta, Manuela; Hennequin, Didier; De Vendômois, Joël Spiroux (2012). "RETRACTED: Long term toxicity of a Roundup herbicide and a Roundup-tolerant genetically modified maize". Food and Chemical Toxicology 50 (11): 4221–31. doi:10.1016/j.fct.2012.08.005. PMID 22999595. 
  16. ↑ Wu, Qiushi; Lu, Kangjie (2021-04-26). "Retraction of paper". https://www-users.cs.umn.edu/~kjlu/papers/withdrawal-letter.pdf. 
  17. ↑ Mats Heimdahl; Loren Terveen (2021-04-27). "Response Linux Foundation". Letter to Linux Foundation Leadership. University of Minnesota, Department of Computer Science & Engineering. Retrieved 2021-05-02.
  18. ↑ Chawla, Dalmeet (2020). "Russian journals retract more than 800 papers after 'bombshell' investigation" (in en). Science. doi:10.1126/science.aba8099. https://www.science.org/content/article/russian-journals-retract-more-800-papers-after-bombshell-investigation. Retrieved 2022-04-19. 
  19. ↑ Kaidi, Abderrahmane; Weinert, Brian T.; Choudhary, Chunaram; Jackson, Stephen P. (2010-09-10). "RETRACTED: Human SIRT6 promotes DNA end resection through CtIP deacetylation". Science 329 (5997): 1348–1353. doi:10.1126/science.1192049. ISSN 1095-9203. PMID 20829486. Bibcode: 2010Sci...329.1348K. 
  20. ↑ Kaidi, Abderrahmane; Jackson, Stephen P. (2013-06-06). "KAT5 tyrosine phosphorylation couples chromatin sensing to ATM signalling". Nature 498 (7452): 70–74. doi:10.1038/nature12201. PMID 23708966. Bibcode: 2013Natur.498...70K. 
  21. ↑ Mayo, Nick (2019-04-12). "Articles pulled after data fabrication in Cambridge DNA lab" (in en). https://www.timeshighereducation.com/news/articles-pulled-after-data-fabrication-cambridge-dna-lab. 
  22. ↑ Hou, Chia-Yi (2019-04-12). "Nature and Science Retractions Connected to Research Misconduct" (in en). https://www.the-scientist.com/news-opinion/nature-science-retractions-connected-to-research-misconduct-65735. 
  23. ↑ "Cornell finds that food marketing researcher Brian Wansink committed misconduct, as he announces retirement". 2018-09-20. https://retractionwatch.com/2018/09/20/beleaguered-food-marketing-researcher-brian-wansink-announces-his-retirement-from-cornell/. 
  24. ↑ "A Prominent Researcher on Eating Habits Resigned After a Scandal Over His Studies". Time Inc.. 2018-09-21. http://time.com/5402927/brian-wansink-cornell-resigned/. 
  25. ↑ "This Ivy League food scientist was a media darling. He just submitted his resignation, the school says.". The Washington Post. 2018-09-20. https://www.washingtonpost.com/health/2018/09/20/this-ivy-league-food-scientist-was-media-darling-now-his-studies-are-being-retracted/. 
  26. ↑ "JAMA journals retract six papers by food marketing researcher Brian Wansink". 2018-09-19. https://retractionwatch.com/2018/09/19/jama-journals-retract-six-papers-by-food-marketing-researcher-brian-wansink/. 
  27. ↑ Oransky, Ivan (2018-12-05). "The Joy of Cooking, vindicated: Journal retracts two more Brian Wansink papers" (in en-US). https://retractionwatch.com/2018/12/05/the-joy-of-cooking-vindicated-journal-retracts-two-more-brian-wansink-papers/. 
  28. ↑ "Retraction Watch Database - Brian Wansink". http://retractiondatabase.org/RetractionSearch.aspx#?auth%3dWansink%252c%2bBrian. 
  29. ↑ Elaine Lies (4 June 2014). "Japan researcher agrees to withdraw disputed stem cell paper". Reuters. https://www.reuters.com/article/us-japan-stemcells-researcher-idUSKBN0EF0SO20140604. 
  30. ↑ "STAP paper co-author Sasai commits suicide". The Japan Times. http://www.japantimes.co.jp/news/2014/08/05/national/embattled-stap-study-co-author-dies-after-apparent-suicide-bid/. 
  31. ↑ "Misconduct in science: An array of errors". The Economist. 10 September 2011. http://www.economist.com/node/21528593. 
  32. ↑ ((The Editors of The Lancet)) (2010). "Retraction—Ileal-lymphoid-nodular hyperplasia, non-specific colitis, and pervasive developmental disorder in children". The Lancet 375 (9713): 445. doi:10.1016/S0140-6736(10)60175-4. PMID 20137807. 
  33. ↑ Eggerston, Laura (2010-03-09). "Lancet retracts 12-year-old article linking autism to MMR vaccines". Canadian Medical Association Journal 182 (4): E199–E200. doi:10.1503/cmaj.109-3179. PMID 20142376. 
  34. ↑ Godlee, Fiona; Smith, Jane; Marcovitch, Harvey (2011-01-08). "Wakefield's article linking MMR vaccine and autism was fraudulent: Clear evidence of falsification of data should now close the door on this damaging vaccine scare". BMJ: British Medical Journal 342 (7788). doi:10.1136/bmj.c7452. PMID 21209060. https://www.bmj.com/content/342/bmj.c7452. Retrieved 2023-10-04. 
  35. ↑ Lerner, Jennifer S.; Gonzalez, Roxana M.; Dahl, Ronald E.; Hariri, Ahmad R.; Taylor, Shelley E. (2005-11-01). "RETRACTED: Facial Expressions of Emotion Reveal Neuroendocrine and Cardiovascular Stress Responses" (in English). Biological Psychiatry 58 (9): 743–750. doi:10.1016/j.biopsych.2005.08.011. ISSN 0006-3223. PMID 16256075. https://www.biologicalpsychiatryjournal.com/article/S0006-3223(05)01000-0/abstract. 
  36. ↑ "Altered repertoire of endogenous immunoglobulin gene expression in transgenic mice containing a rearranged mu heavy chain gene". Cell 45 (2): 247–59. April 1986. doi:10.1016/0092-8674(86)90389-2. PMID 3084104.  (Retracted)
  37. ↑ "Call for retraction of 400 scientific papers amid fears organs came from Chinese prisoners" (in en). 2019-02-05. http://www.theguardian.com/science/2019/feb/06/call-for-retraction-of-400-scientific-papers-amid-fears-organs-came-from-chinese-prisoners. 
  38. ↑ Rogers, Wendy; Robertson, Matthew P.; Ballantyne, Angela; Blakely, Brette; Catsanos, Ruby; Clay-Williams, Robyn; Singh, Maria Fiatarone (2019-02-01). "Compliance with ethical standards in the reporting of donor sources and ethics review in peer-reviewed publications involving organ transplantation in China: a scoping review" (in en). BMJ Open 9 (2): e024473. doi:10.1136/bmjopen-2018-024473. ISSN 2044-6055. PMID 30723071. 
  39. ↑ Oransky, Ivan (2020-04-15). "Journals have retracted or flagged more than 40 papers from China that appear to have used organ transplants from executed prisoners" (in en-US). https://retractionwatch.com/2020/04/15/journals-have-retracted-or-flagged-more-than-40-papers-from-china-that-appear-to-have-used-organ-transplants-from-executed-prisoners/. 
  40. ↑ Dyer, Owen (2019-08-20). "Journals retract 15 Chinese transplantation studies over executed prisoner concerns" (in en). BMJ 366: l5220. doi:10.1136/bmj.l5220. ISSN 0959-8138. PMID 31431427. 
  41. ↑ Dyer, Owen (2017-02-10). "Journal retracts Chinese paper because transplanted livers couldn't be traced" (in en). BMJ 356: j746. doi:10.1136/bmj.j746. ISSN 0959-8138. PMID 28188135. 
  42. ↑ 42.0 42.1 Mehra, Mandeep R.; Desai, Sapan S.; Ruschitzka, Frank; Patel, Amit N (2020-05-22). "RETRACTED: Hydroxychloroquine or chloroquine with or without a macrolide for treatment of COVID-19: a multinational registry analysis". The Lancet. doi:10.1016/S0140-6736(20)31180-6. PMID 32450107. PMC 7255293. https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(20)31180-6/fulltext. Retrieved 2020-06-07. 
  43. ↑ Boseley, Sarah (2020-06-04). "How were medical journals and WHO caught out over hydroxychloroquine?". The Guardian. https://www.theguardian.com/world/2020/jun/03/how-were-medical-journals-and-who-caught-out-over-hydroxychloroquine. 
  44. ↑ Boseley, Sarah; Davey, Melissa (2020-06-04). "Covid-19: Lancet retracts paper that halted hydroxychloroquine trials". The Guardian. https://www.theguardian.com/world/2020/jun/04/covid-19-lancet-retracts-paper-that-halted-hydroxychloroquine-trials. 
  45. ↑ Liu, Ming-Jin; Xiong, Cai-Hua; Xiong, Le; Huang, Xiao-Lin (January 5, 2016). "Biomechanical Characteristics of Hand Coordination in Grasping Activities of Daily Living". PLOS ONE 11 (1): e0146193. doi:10.1371/journal.pone.0146193. PMID 26730579. Bibcode: 2016PLoSO..1146193L.  (Retracted)
  46. ↑ "Reviewing #Creatorgate: Is God a Scientific Proposition? - Articles". https://biologos.org/articles/reviewing-creatorgate-is-god-a-scientific-proposition/. 

Further reading



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