Biology:Ion transporter
In biology, a transporter is a transmembrane protein that moves ions (or other small molecules) across a biological membrane to accomplish many different biological functions, including cellular communication, maintaining homeostasis, energy production, etc.[1] There are different types of transporters including pumps, uniporters, antiporters, and symporters. Active transporters or ion pumps are transporters that convert energy from various sources—including adenosine triphosphate (ATP), sunlight, and other redox reactions—to potential energy by pumping an ion up its concentration gradient.[2] This potential energy could then be used by secondary transporters, including ion carriers and ion channels, to drive vital cellular processes, such as ATP synthesis.[3]
This page is focused mainly on ion transporters acting as pumps, but transporters can also function to move molecules through facilitated diffusion. Facilitated diffusion does not require ATP and allows molecules, that are unable to quickly diffuse across the membrane (passive diffusion), to diffuse down their concentration gradient through these protein transporters.[4]
Ion transporters are essential for proper cell function and thus they are highly regulated by the cell and studied by researchers using a variety of methods. Some examples of cell regulations and research methods will be given.
Classification and disambiguation
Ion transporters are classified as a super family of transporters that contain 12 families of transporters.[5] These families are part of the Transport Classification (TC) system that is used by the International Union of Biochemistry and Molecular Biology (IUBMB) and are grouped according to characteristics such as the substrates being transported, the transport mechanism, the energy source used, and also by comparing the DNA sequences making up each protein. The most important unifying factor being the charged nature of the substrate which indicates the transport of an ion and not a neutral species.[5] Ion transporters differ significantly from ion channels. Channels are pores that run through the membrane, whereas transports are proteins that must change shape to switch which side of the membrane it is open to, because of this transporters are much slower at moving molecules than channels.
An electrochemical gradient or concentration gradient is a difference in concentration of a chemical molecule or ion in two separate areas.[6] At equilibrium the concentrations of the ion in both areas will be equal, so if there is a difference in concentration the ions will seek to flow "down" the concentration gradient or from a high concentration to low concentration. Ion channels allows the specific ions that will fit into the channel to flow down their concentration gradient, equalizing the concentrations on either side of the cell membrane. Ion channels and ion transporters accomplish this via facilitated diffusion which is a type of passive transport. However, only ion transporters can also perform active transport, which involves moving ions against their concentration gradient.[7] Using energy sources such as ATP, ion transporters are able to move ions against their concentration gradient which can then be used by secondary transporters or other proteins as a source of energy.[6]
Energy source
Primary transporter
Primary transporters use energy to transport ions such as Na +, K+, and Ca2+ across a cells membrane and can create concentration gradients.[6] This transport can use ATP as an energy source or it can be used to generate ATP through methods such as the electron transport chain in plants.[7][6]
Active transporter
Transporters that use ATP convert the energy in ATP into potential energy in the form of a concentration gradient. They use the ATP to transport an ion from a low concentration to a higher concentration. Examples of proteins that use ATP are P-type ATPases that transfer Na +, K+, and Ca2+ ions by phosphorylation, A-type ATPases that transfer anions, and ABC transporters (ATP binding cassette transporters) that transport a broad set of molecules.[6] Examples of the P-type ATPase include Na+/K+-ATPase[7][8][9] that is regulated by Janus Kinase-2[10] as well as Ca2+ ATPase which exhibits sensitivity to ADP and ATP concentrations[3] P-glycoprotein is an example of an ABC transport binding protein in the human body.
ATP producing transporter
ATP producing transporters run in the opposite direction of ATP Utilizing transporters. These proteins transport ions from high to low concentration with the gradient but in the process ATP is formed. Potential energy in the form of the concentration gradient is used to generate ATP.[6] In animals, this ATP synthesis takes place in the mitochondria using F- type ATPase otherwise known as ATP synthase. This process utilizes the electron transport chain in a process called oxidative phosphorylation.[11][2] V-type ATPase serves the opposite function as F-type ATPase and is used in plants to hydrolyze ATP to create a proton gradient. Examples of this are lysosomes that use V-type ATPase acidify vesicles or plant vacuoles during process of photosynthesis in the chloroplasts.[7] This process can be regulated through various methods such as pH.[12]
Secondary transporter
Secondary transporters also transport ions (or small molecules) against the concentration gradient – from low concentration to high concentration - but unlike primary transporters which use ATP to create a concentration gradient, secondary transporters use the potential energy from the concentration gradient created by the primary transporters to transport ions.[6] For example, the sodium-dependent glucose transporter found in the small intestine and kidney use the sodium gradient created in the cell by the sodium potassium pump (as mentioned above) to help carry glucose into the cell.[13] This happens as sodium flows down its concentration gradient which provides enough energy to push glucose up its concentration gradient back into the cell. This is important in the small intestine and the kidney to prevent them from losing glucose. Symporters such as the sodium-glucose symporter transport an ion with its concentration gradient, and they couple the transport of a second molecule in the same direction. Antiporters also use the concentration gradient of one molecule to move another up its concentration gradient but the coupled molecule is transported in the opposite direction.[6]
Regulation
Ion transporters can be regulated in a variety of different ways such as phosphorylation, allosteric inhibition or activation, and sensitivity to ion concentration. Using protein kinases to add a phosphate group or phosphatases to dephosphorylate the protein can change the activity of the transporter.[14] Whether the protein is activated or inhibited with the addition of the phosphate group depends on the specific protein. With allosteric inhibition, the regulatory ligand can bind into the regulatory site and either inhibit or activate the transporter. Ion transporters can also be regulated by the concentration of an ion (not necessarily the ion it transfers) in solution. For example, the electron transport chain is regulated by the presence of H+ ions (pH) in solution.[6]
Techniques for studying ion transporters
Patch clamp
A patch clamp is an electrophysiology technique used to study channels and transporters in cells by tracking the current that run through them. This technique was perfected by Hodgkin and Huxley before the existence of channels and transporters was known.[11][15] Besides its groundbreaking work early on patch clamping legacy continues on and is commonly used by researchers still to study ion transporters and how environments and ligands effects the function of the transporter.[1][16]
X-ray crystallography
X-ray crystallography is an incredible tool that allows the structure of proteins to be visualized, however, it is only a snapshot of one protein conformation. The structure of transport proteins allows researchers to further understand how and what the transporter does to move molecules across the membrane.[17][18]
Fluorescence recovery after photobleaching
Fluorescence recovery after photobleaching (FRAP) is a technique used to track diffusion of lipids or proteins in a membrane. This technique is used to better understand transporters mobility in the cell and its interactions with lipid domains and lipid rafts in the cell membrane.
Förster resonance energy transfer
Förster resonance energy transfer (FRET) is a technique that uses fluorescence to track how close two proteins are to each other. This has been used in studying transporters to see how they interact with other cellular proteins.[1]
Table of ion transporters
See also
- Active transport
- Ion transport number
- Ion transporter superfamily
- Membrane transport protein
- Transport protein
References
- ↑ 1.0 1.1 1.2 "Modeling and simulation of ion channels". Chemical Reviews 112 (12): 6250–84. December 2012. doi:10.1021/cr3002609. PMID 23035940.
- ↑ 2.0 2.1 "Channels and Transporters". Neuroscience (2nd ed.). Sunderland, Mass.: Sinauer Associates. 2001. ISBN 0-87893-742-0. https://www.ncbi.nlm.nih.gov/books/NBK11010/.
- ↑ 3.0 3.1 "Mitochondrial free [Ca2+ increases during ATP/ADP antiport and ADP phosphorylation: exploration of mechanisms"]. Biophysical Journal 99 (4): 997–1006. August 2010. doi:10.1016/j.bpj.2010.04.069. PMID 20712982. Bibcode: 2010BpJ....99..997H.
- ↑ "Ion channels versus ion pumps: the principal difference, in principle". Nature Reviews. Molecular Cell Biology 10 (5): 344–52. May 2009. doi:10.1038/nrm2668. PMID 19339978.
- ↑ 5.0 5.1 "The ion transporter superfamily". Biochimica et Biophysica Acta (BBA) - Biomembranes 1618 (1): 79–92. December 2003. doi:10.1016/j.bbamem.2003.10.010. PMID 14643936.
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 Fundamentals of biochemistry : life at the molecular level. 2016-02-29. ISBN 9781118918401. OCLC 910538334.
- ↑ 7.0 7.1 7.2 7.3 "Ion transport". AccessScience. 2014-01-01. doi:10.1036/1097-8542.352000. http://accessscience.com/content/352000.
- ↑ "A structural overview of the plasma membrane Na+,K+-ATPase and H+-ATPase ion pumps". Nature Reviews. Molecular Cell Biology 12 (1): 60–70. January 2011. doi:10.1038/nrm3031. PMID 21179061.
- ↑ "Visualizing the mapped ion pathway through the Na,K-ATPase pump". Channels 3 (6): 383–6. November 2009. doi:10.4161/chan.3.6.9775. PMID 19806033.
- ↑ "Down-regulation of the epithelial Na⁺ channel ENaC by Janus kinase 2". The Journal of Membrane Biology 247 (4): 331–8. April 2014. doi:10.1007/s00232-014-9636-1. PMID 24562791.
- ↑ 11.0 11.1 "The discovery of oxidative phosphorylation: a conceptual off-shoot from the study of glycolysis". Studies in History and Philosophy of Biological and Biomedical Sciences 41 (3): 253–62. September 2010. doi:10.1016/j.shpsc.2010.07.014. PMID 20934646.
- ↑ "pH-dependent regulation of electron transport and ATP synthesis in chloroplasts". Photosynthesis Research 116 (2–3): 511–34. October 2013. doi:10.1007/s11120-013-9845-y. PMID 23695653.
- ↑ "Studies on the mechanism of the intestinal absorption of sugars. X. An effect of Na+ concentration on the apparent Michaelis constants for intestinal sugar transport, in vitro". Biochimica et Biophysica Acta 109 (2): 467–77. November 1965. doi:10.1016/0926-6585(65)90172-x. PMID 5867548.
- ↑ "CFTR Cl- channel functional regulation by phosphorylation of focal adhesion kinase at tyrosine 407 in osmosensitive ion transporting mitochondria rich cells of euryhaline killifish". The Journal of Experimental Biology 212 (Pt 15): 2365–77. August 2009. doi:10.1242/jeb.030015. PMID 19617429.
- ↑ "Hodgkin and Huxley and the basis for electrical signalling: a remarkable legacy still going strong". The Journal of Physiology 590 (11): 2569–70. June 2012. doi:10.1113/jphysiol.2012.233411. PMID 22787169.
- ↑ "α-Synuclein stimulates a dopamine transporter-dependent chloride current and modulates the activity of the transporter". The Journal of Biological Chemistry 286 (51): 43933–43. December 2011. doi:10.1074/jbc.M111.241232. PMID 21990355.
- ↑ "Crystal structure of the sodium-potassium pump". Nature 450 (7172): 1043–9. December 2007. doi:10.1038/nature06419. PMID 18075585. Bibcode: 2007Natur.450.1043M.
- ↑ "Crystal structure of the sodium-potassium pump at 2.4 A resolution". Nature 459 (7245): 446–50. May 2009. doi:10.1038/nature07939. PMID 19458722. Bibcode: 2009Natur.459..446S.
External links
- Ion+pumps at the US National Library of Medicine Medical Subject Headings (MeSH) D12.776.157.530.450; D12.776.543.585.450
- The Transporter substrate database (TSdb)
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