Biology:Potassium channel tetramerisation domain

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K+ channel tetramerisation domain
PDB 1t1d EBI.jpg
Identifiers
SymbolK_tetra
PfamPF02214
InterProIPR003131
SCOP21t1d / SCOPe / SUPFAM
OPM superfamily8
OPM protein2a79

K+ channel tetramerisation domain is the N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels. It defines molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain Pfam PF00651.

Potassium channels

Potassium channels are the most diverse group of the ion channel family.[2][3] They are important in shaping the action potential, and in neuronal excitability and plasticity.[4] The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups:[5] the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group.

These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers.[6] In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes.[7] In prokaryotic cells, they play a role in the maintenance of ionic homeostasis.[8]

Alpha subunits of the channels

All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK).[8][9] The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels.

The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential.[10] More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity.[11] When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions.

Tetramerization domain

The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels.[12] This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.

Human proteins containing this domain

BTBD10; KCNA1; KCNA10; KCNA2; KCNA3; KCNA4; KCNA5; KCNA6; KCNA7; KCNB1; KCNB2; KCNC1; KCNC2; KCNC3; KCNC4; KCND1; KCND2; KCND3; KCNF1; KCNG1; KCNG2; KCNG3; KCNG4; KCNRG; KCNS1; KCNS2; KCNS3; KCNV1; KCNV2; KCTD1; KCTD10; KCTD11; KCTD12; KCTD13; KCTD14; KCTD15; KCTD16; KCTD17; KCTD18; KCTD19; KCTD2; KCTD20; KCTD21; KCTD3; KCTD4; KCTD5; KCTD6; KCTD7; KCTD8; KCTD9; SHKBP1; TNFAIP1;

References

  1. ↑ Bixby KA; Nanao MH; Shen NV et al. (January 1999). "Zn2+-binding and molecular determinants of tetramerization in voltage-gated K+ channels". Nature Structural & Molecular Biology 6 (1): 38–43. doi:10.1038/4911. PMID 9886290. 
  2. ↑ "The molecular biology of K+ channels". Curr. Opin. Cell Biol. 3 (4): 663–670. 1991. doi:10.1016/0955-0674(91)90039-2. PMID 1772658. 
  3. ↑ "Shaw-like rat brain potassium channel cDNA's with divergent 3' ends". FEBS Lett. 288 (1): 163–167. 1991. doi:10.1016/0014-5793(91)81026-5. PMID 1879548. 
  4. ↑ "Cloning of a probable potassium channel gene from mouse brain". Nature 332 (6167): 837–839. 1988. doi:10.1038/332837a0. PMID 2451788. Bibcode: 1988Natur.332..837T. 
  5. ↑ "Molecular basis of functional diversity of voltage-gated potassium channels in mammalian brain". EMBO J. 8 (11): 3235–3244. 1989. doi:10.1002/j.1460-2075.1989.tb08483.x. PMID 2555158. 
  6. ↑ "Multiple potassium-channel components are produced by alternative splicing at the Shaker locus in Drosophila". Nature 331 (6152): 137–142. 1988. doi:10.1038/331137a0. PMID 2448635. Bibcode: 1988Natur.331..137S. 
  7. ↑ "Cloning, functional expression, and regulation of two K+ channels in human T lymphocytes". J. Biol. Chem. 267 (12): 8650–8657. 1992. PMID 1373731. 
  8. ↑ 8.0 8.1 Miller C (2000). "An overview of the potassium channel family". Genome Biol. 1 (4): reviews0004.1. doi:10.1186/gb-2000-1-4-reviews0004. PMID 11178249. 
  9. ↑ Ashcroft FM (2000). "Voltage-gated K+ channels". Ion Channels and Disease: 97–123. doi:10.1016/b978-012065310-2/50007-2. ISBN 9780120653102. 
  10. ↑ Sansom MS (2000). "Potassium channels: watching a voltage-sensor tilt and twist". Curr. Biol. 10 (5): R206–9. doi:10.1016/S0960-9822(00)00354-7. PMID 10712896. 
  11. ↑ "New modulatory alpha subunits for mammalian Shab K+ channels". J. Biol. Chem. 272 (39): 24371–24379. 1997. doi:10.1074/jbc.272.39.24371. PMID 9305895. 
  12. ↑ "Zn2+-binding and molecular determinants of tetramerization in voltage-gated K+ channels". Nature Structural & Molecular Biology 6 (1): 38–43. 1999. doi:10.1038/4911. PMID 9886290. 

Further reading

  • Bixby, KA; Nanao, MH; Shen, NV; Kreusch, A; Bellamy, H; Pfaffinger, PJ; Choe, S (1999). "Zn2+-binding and molecular determinants of tetramerization in voltage-gated K+ channels". Nature Structural & Molecular Biology 6 (1): 38–43. doi:10.1038/4911. PMID 9886290. 
This article incorporates text from the public domain Pfam and InterPro: IPR003131



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