Biology:ACO2
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Aconitase 2, mitochondrial is a protein that in humans is encoded by the ACO2 gene.[1]
Structure
The secondary structure of ACO2 consists of numerous alternating alpha helices and beta sheets (SCOP classification: α/β alternating). The tertiary structure reveals that the active site is buried in the middle of the enzyme, and, since there is only one subunit, there is no quaternary structure. Aconitase consists of four domains: three of the domains are tightly compact, and the fourth domain is more flexible, allowing for conformational changes.[2] The ACO2 protein contains a 4Fe-4S iron-sulfur cluster. This iron sulfur cluster does not have the typical function of participating in oxidation-reduction reactions, but rather facilitates the elimination of the citrate hydroxyl group by holding the group in a certain conformation and orientation.[3] It is at this 4Fe-4S site that citrate or isocitrate binds to initiate catalysis. The rest of the active site is made up of the following residues: Gln72, Asp100, His101, Asp165, Ser166, His167, His147, Glu262, Asn258, Cys358, Cys421, Cys424, Cys358, Cys421, Asn446, Arg447, Arg452, Asp568, Ser642, Ser643, Arg644, Arg580. Their functions have yet to be elucidated.[4]
Function
The protein encoded by this gene belongs to the aconitase/IPM isomerase family. It is an enzyme that catalyzes the interconversion of citrate to isocitrate via cis-aconitate in the second step of the TCA cycle. This protein is encoded in the nucleus and functions in the mitochondrion. It was found to be one of the mitochondrial matrix proteins that are preferentially degraded by the serine protease 15 (PRSS15), also known as Lon protease, after oxidative modification.
Mechanism
While both forms of aconitases have similar functions, most studies focus on ACO2. The iron-sulfur (4Fe-4S) cofactor is held in place by the sulfur atoms on Cys385, Cys448, and Cys451, which are bind to three of the four available iron atoms. A fourth iron atom is included in the cluster together with a water molecule when the enzyme is activated. This fourth iron atom binds to either one, two, or three partners; in this reaction, oxygen atoms belonging to outside metabolites are always involved.[4] When ACO2 is not bound to a substrate, the iron-sulfur cluster is bound to a hydroxyl group through an interaction with one of the iron molecules. When the substrate binds, the bound hydroxyl becomes protonated. A hydrogen bond forms between His101 and the protonated hydroxyl, which allows the hydroxyl to form a water molecule. Alternatively, the proton could be donated by His167 as this histidine is hydrogen bonded to a H2O molecule. His167 is also hydrogen bonded to the bound H2O in the cluster. Both His101 and His167 are paired with carboxylates Asp100 and Glu262, respectively, and are likely to be protonated. The conformational change associated with substrate binding reorients the cluster. The residue that removes a proton from citrate or isocitrate is Ser642. This causes the cis-Aconitate intermediate, which is a direct result of the deprotonation. Then, there is a rehydration of the double bond of cis-aconitate to form the product.[5]
Clinical significance
A serious ailment associated with aconitase is known as aconitase deficiency.[6] It is caused by a mutation in the gene for iron-sulfur cluster scaffold protein (ISCU), which helps build the Fe-S cluster on which the activity of aconitase depends.[6] The main symptoms are myopathy and exercise intolerance; physical strain is lethal for some patients because it can lead to circulatory shock.[6][7] There are no known treatments for aconitase deficiency.[6]
Another disease associated with aconitase is Friedreich's ataxia (FRDA), which is caused when the Fe-S proteins in aconitase and succinate dehydrogenase have decreased activity.[8] A proposed mechanism for this connection is that decreased Fe-S activity in aconitase and succinate dehydrogenase is correlated with excess iron concentration in the mitochondria and insufficient iron in the cytoplasm, disrupting iron homeostasis.[8] This deviance from homeostasis causes FRDA, a neurodegenerative disease for which no effective treatments have been found.[8]
Finally, aconitase is thought to be associated with diabetes.[9][10] Although the exact connection is still being determined, multiple theories exist.[9][10] In a study of organs from mice with alloxan diabetes (experimentally induced diabetes[11]) and genetic diabetes, lower aconitase activity was found to decrease the rates of metabolic reactions involving citrate, pyruvate, and malate.[9] In addition, citrate concentration was observed to be unusually high.[9] Since these abnormal data were found in diabetic mice, the study concluded that low aconitase activity is likely correlated with genetic and alloxan diabetes.[9] Another theory is that, in diabetic hearts, accelerated phosphorylation of heart aconitase by protein kinase C causes aconitase to speed up the final step of its reverse reaction relative to its forward reaction.[10] That is, it converts isocitrate back to cis-aconitate more rapidly than usual, but the forward reaction proceeds at the usual rate.[10] This imbalance may contribute to disrupted metabolism in diabetics.[10]
The mitochondrial form of aconitase, ACO2, is correlated with many diseases, as it is directly involved in the conversion of glucose into ATP, or the central metabolic pathway. Decreased expression of ACO2 in gastric cancer cells has been associated with a poor prognosis;[12] this effect has also been seen in prostate cancer cells.[13][14] A few treatments have been identified in vitro to induce greater ACO2 expression, including exposing the cells to hypoxia and the element manganese.[15][16]
References
- ↑ "Entrez Gene: Aconitase 2, mitochondrial". https://www.ncbi.nlm.nih.gov/gene/50.
- ↑ "Conservation of aconitase residues revealed by multiple sequence analysis. Implications for structure/function relationships". European Journal of Biochemistry 239 (1): 197–200. Jul 1996. doi:10.1111/j.1432-1033.1996.0197u.x. PMID 8706708.
- ↑ "Crystal structure of human iron regulatory protein 1 as cytosolic aconitase". Structure 14 (1): 129–39. Jan 2006. doi:10.1016/j.str.2005.09.009. PMID 16407072.
- ↑ 4.0 4.1 "Crystal structures of aconitase with trans-aconitate and nitrocitrate bound". Journal of Molecular Biology 237 (4): 437–51. Apr 1994. doi:10.1006/jmbi.1994.1246. PMID 8151704.
- ↑ "Aconitase, a two-faced protein: enzyme and iron regulatory factor". FASEB Journal 7 (15): 1442–9. Dec 1993. doi:10.1096/fasebj.7.15.8262329. PMID 8262329.
- ↑ 6.0 6.1 6.2 6.3 Orphanet, "Aconitase deficiency," April 2008, http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=43115
- ↑ "Mitochondrial myopathy with succinate dehydrogenase and aconitase deficiency. Abnormalities of several iron-sulfur proteins". The Journal of Clinical Investigation 92 (6): 2660–6. Dec 1993. doi:10.1172/JCI116882. PMID 8254022.
- ↑ 8.0 8.1 8.2 "Human iron-sulfur cluster assembly, cellular iron homeostasis, and disease". Biochemistry 49 (24): 4945–56. Jun 2010. doi:10.1021/bi1004798. PMID 20481466.
- ↑ 9.0 9.1 9.2 9.3 9.4 "Alterations in mitochondrial aconitase activity and respiration, and in concentration of citrate in some organs of mice with experimental or genetic diabetes". FEBS Letters 183 (1): 173–6. Apr 1985. doi:10.1016/0014-5793(85)80979-0. PMID 3884379.
- ↑ 10.0 10.1 10.2 10.3 10.4 "Regulation of mitochondrial aconitase by phosphorylation in diabetic rat heart". Cellular and Molecular Life Sciences 66 (5): 919–32. Mar 2009. doi:10.1007/s00018-009-8696-3. PMID 19153662.
- ↑ "Alloxan Diabetes - Medical Definition," Stedman's Medical Dictionary, 2006 Lippincott Williams & Wilkins, http://www.medilexicon.com/medicaldictionary.php?t=24313
- ↑ "Decreased expression of the mitochondrial metabolic enzyme aconitase (ACO2) is associated with poor prognosis in gastric cancer". Medical Oncology 30 (2): 552. Jun 2013. doi:10.1007/s12032-013-0552-5. PMID 23550275.
- ↑ "Modulation of mitochondrial aconitase on the bioenergy of human prostate carcinoma cells". Molecular Genetics and Metabolism 81 (3): 244–52. Mar 2004. doi:10.1016/j.ymgme.2003.12.009. PMID 14972331.
- ↑ "p53 downregulates the gene expression of mitochondrial aconitase in human prostate carcinoma cells". The Prostate 71 (1): 62–70. Jan 2011. doi:10.1002/pros.21222. PMID 20607720.
- ↑ "Hypoxia upregulates the gene expression of mitochondrial aconitase in prostate carcinoma cells". Journal of Molecular Endocrinology 51 (1): 131–41. 2013. doi:10.1530/JME-13-0090. PMID 23709747.
- ↑ "Manganese antagonizes iron blocking mitochondrial aconitase expression in human prostate carcinoma cells". Asian Journal of Andrology 8 (3): 307–15. May 2006. doi:10.1111/j.1745-7262.2006.00139.x. PMID 16625280.
External links
- Human ACO2 genome location and ACO2 gene details page in the UCSC Genome Browser.
Further reading
- "Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry". Journal of Proteome Research 4 (3): 931–40. 2005. doi:10.1021/pr050024a. PMID 15952740.
- "Assignment of the locus ACONM to chromosome 22". Cytogenetics and Cell Genetics 22 (1–6): 223–5. 1978. doi:10.1159/000130941. PMID 752478.
- "Assignment of the mitochondrial aconitase gene (ACONM) to human chromosome 22". Cytogenetics and Cell Genetics 22 (1–6): 212–4. 1978. doi:10.1159/000130938. PMID 752476.
- "Aconitase (E.C. 4.2.1.3) mitochondrial locus (ACONM) mapped to human chromosome 22". Cytogenetics and Cell Genetics 22 (1–6): 226–7. 1978. doi:10.1159/000130942. PMID 752479.
- "Infantile cerebellar-retinal degeneration associated with a mutation in mitochondrial aconitase, ACO2". American Journal of Human Genetics 90 (3): 518–23. Mar 2012. doi:10.1016/j.ajhg.2012.01.009. PMID 22405087.
- "A double life: cytosolic aconitase as a regulatory RNA binding protein". Molecular Biology of the Cell 4 (1): 1–5. Jan 1993. doi:10.1091/mbc.4.1.1. PMID 8443405.
- "Modulation of mitochondrial aconitase on the bioenergy of human prostate carcinoma cells". Molecular Genetics and Metabolism 81 (3): 244–52. Mar 2004. doi:10.1016/j.ymgme.2003.12.009. PMID 14972331.
- "Regional localization of the genes coding for human ACO2, ARSA, and NAGA on chromosome 22". Cytogenetics and Cell Genetics 28 (3): 169–72. 1980. doi:10.1159/000131527. PMID 7192199.
- "The distribution and properties of aconitase isozymes in man". Annals of Human Genetics 40 (4): 385–401. May 1977. doi:10.1111/j.1469-1809.1977.tb01857.x. PMID 879710.
This article incorporates text from the United States National Library of Medicine, which is in the public domain.
![]() | Original source: https://en.wikipedia.org/wiki/ACO2.
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