Biology:RAB11B

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Short description: Protein-coding gene in the species Homo sapiens


A representation of the 3D structure of the protein myoglobin showing turquoise α-helices.
Generic protein structure example

Ras-related protein Rab-11B is a protein that in humans is encoded by the RAB11B gene.[1][2] Rab11b is reported as most abundantly expressed in brain, heart and testes.

Rab (Ras-related in brain) proteins form the largest section of the Ras superfamily of small GTPases. The Rab family proteins regulate intracellular membrane trafficking processes including vesicle budding, tethering, and fusion. The isoforms Rab11a, Rab11b, and Rab11c/Rab25 constitute the Rab11 subfamily based on specific sequence motifs.[3] While RAB11A is located on chromosome 15[4] and RAB11C on chromosome 1, RAB11B is placed on chromosome 19. Rab11 proteins are implicated in endocytosis and exocytosis.[5] Rab11b is reported as most abundantly expressed in brain, heart and testes.[6] Early studies with deletions of RAB11 homologs in Saccharomyces cerevisiae proved their importance in cell survival.[7][8] Despite sharing high sequence homology, Rab11a and Rab11b appear to reside within distinct vesicle compartments.[9] Majority of Rab11b neither colocalize with transferrin receptor nor with the polymeric IgA receptor. This protein also exhibits a dependence on the microtubule cytoskeleton that is different from Rab11a.[9] High sequence diversity in the C-terminal hypervariable region is responsible for variable membrane targeting between these proteins.

Function

Members of the Rab11 subfamily act in recycling of proteins from the endosomes to the plasma membrane, in transport of molecules from the trans-Golgi network to the plasma membrane and in phagocytosis. This subfamily also acts in polarized transport in epithelial cells.[10][11][12][13][14] Whereas most studies refer to the Rab11a isoform, little is known about Rab11b so far. Rab11b localizes predominantly in the pericentriolar recycling compartment and serves as an important component of the vesicular machinery.[15] It is required for the transfer of internalized transferrin from the recycling compartment to the plasma membrane for which active Rab11b as well as GTP hydrolysis is necessary.[15]

Structure

All Ras GTPases consist of a similar core structure and highly conserved P-loop, switch 1 and switch 2 regions. The Rab11b monomer exhibits a typical Ras-like, small GTPase fold with a six stranded β-sheet core (β1-β6) surrounded by five major α-helices (α1-α5)[12] and one minor α-helix (α6). According to the sequence similarity to other Rab GTPases can be assumed that they show closely resembling characteristics in nucleotide binding and hydrolysis. However, Rab11 isoforms could differ in hydrolysis kinetics owing to the differences in conformation, since Rab11a and Rab11b do not show an α-helical switch 2 region like other Rab GTPases. Rab11b shares 90% amino acid identity to Rab11a.[12] Kinetic experiments with Rab11a/b and Rab11-interacting proteins (FIPs) indicate that FIPs cannot differentiate between GTP-bound Rab11a and Rab11b in vitro.[16] The major divergence reveals in the inactive state. While Pasqualato et al. crystallized inactive Rab11a as a dimer in the asymmetric unit, Scapin et al. observed single crystallographically independent monomers of both the GDP- and the GppNHp-bound Rab11b structures.[12][17]

Cartoon model of active Rab11b-GppNP complex (PDB-ID: 2F9M[12]). This model includes amino acids 8–188. The model shows classic Ras-like structure with a six stranded beta sheet core encircled by 5 major and one minor α-helix. GppNp and Mg2+ form polar bonds with the residues S20, K24, S25, N27, S40/S42/T43 (switch1), N124, K125, D127, S154, and with some parts of the backbone highlighted in olive green. Hydrogen-bonds are drawn as black dots. Atoms of GppNP, Mg2+, and sidechains are colored corresponding to their element. O = red, N = blue, P = orange, and Mg = green. The purple sequence represents the Rab-typical α310 helix region.
Alignment of inactive and active Rab11b (PDB-IDs: 2F9L/2F9M[12]). The alignment shows slight conformational differences between the GDP- and the GppNP-bound form. Major divergences are displayed in red. The Rab11b-GDP structure shows the α310 helix in the switch 2 region whereas Rab11b-GppNP does not. Rab11b-GDP model lacks in the switch 1 section 39–41. These amino acids could not be modeled from the electron density map. Due to the lack in switch 1 structure, the two states are not comparable from these models. Furthermore, the inactive state shows a truncated α-6 helix.

Clinical significance

Due to their crucial importance in vesicle transport and recycling, Rab11 proteins are linked to various non-pathogen or pathogen induced diseases. Most of the published data do not specify whether it is the a- or the b-isoform. Rab11 proteins have been implicated in Alzheimer's disease,[18][19] Arthrogryposis-renal dysfunction-cholestasis (ARC),[20] Batten disease,[21] and Charcot-Marie-Tooth Neuropathy Type 4C (CMT4C).[22] Intracellular bacteria Chlamydia pneumoniae and Chlamydia trachomatis that replicate in membrane bound compartments hijack the trafficking machinery recruiting Rab GTPases to promote their replication within the host cell. Knock down of Rab11 decreased the formation of infectious particles.[23][24][25] Recent studies report a similar use of intracellular trafficking by Hantavirus and Influenza A virus. Replicated viruses benefit from Rab11 mediated recycling endosome pathway to exit the cell and infect surrounding tissue.[26][27][28][29]

References

  1. ↑ "Molecular cloning of two small GTP-binding proteins from human skeletal muscle". Biochemical and Biophysical Research Communications 205 (3): 1875–82. Dec 1994. doi:10.1006/bbrc.1994.2889. PMID 7811277. 
  2. ↑ "Entrez Gene: RAB11B RAB11B, member RAS oncogene family". https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9230. 
  3. ↑ "Genomic structure of murine Rab11 family members". Biochemical and Biophysical Research Communications 269 (2): 611–7. Mar 2000. doi:10.1006/bbrc.2000.2334. PMID 10708602. 
  4. ↑ "Human rab11a: transcription, chromosome mapping and effect on the expression levels of host GTP-binding proteins". FEBS Letters 429 (3): 359–64. Jun 1998. doi:10.1016/s0014-5793(98)00607-3. PMID 9662449. 
  5. ↑ "Rab11 regulates the compartmentalization of early endosomes required for efficient transport from early endosomes to the trans-golgi network". The Journal of Cell Biology 151 (6): 1207–20. Dec 2000. doi:10.1083/jcb.151.6.1207. PMID 11121436. 
  6. ↑ "Molecular analysis of mouse Rab11b: a new type of mammalian YPT/Rab protein". Genomics 22 (3): 610–6. Aug 1994. doi:10.1006/geno.1994.1434. PMID 8001972. 
  7. ↑ "Two GTPase isoforms, Ypt31p and Ypt32p, are essential for Golgi function in yeast". The EMBO Journal 15 (23): 6460–75. Dec 1996. doi:10.1002/j.1460-2075.1996.tb01037.x. PMID 8978673. 
  8. ↑ "Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment". The Journal of Cell Biology 137 (3): 563–80. May 1997. doi:10.1083/jcb.137.3.563. PMID 9151665. 
  9. ↑ 9.0 9.1 "Rab11b resides in a vesicular compartment distinct from Rab11a in parietal cells and other epithelial cells". Experimental Cell Research 290 (2): 322–31. Nov 2003. doi:10.1016/s0014-4827(03)00340-9. PMID 14567990. 
  10. ↑ "Rab11 is required for trans-golgi network-to-plasma membrane transport and a preferential target for GDP dissociation inhibitor". Molecular Biology of the Cell 9 (11): 3241–57. Nov 1998. doi:10.1091/mbc.9.11.3241. PMID 9802909. 
  11. ↑ "A Rab11-containing rapidly recycling compartment in macrophages that promotes phagocytosis". Proceedings of the National Academy of Sciences of the United States of America 97 (2): 680–5. Jan 2000. doi:10.1073/pnas.97.2.680. PMID 10639139. Bibcode: 2000PNAS...97..680C. 
  12. ↑ 12.0 12.1 12.2 12.3 12.4 12.5 "The crystal structure of the small GTPase Rab11b reveals critical differences relative to the Rab11a isoform". Journal of Structural Biology 154 (3): 260–8. Jun 2006. doi:10.1016/j.jsb.2006.01.007. PMID 16545962. 
  13. ↑ "Rab11 regulates recycling through the pericentriolar recycling endosome". The Journal of Cell Biology 135 (4): 913–24. Nov 1996. doi:10.1083/jcb.135.4.913. PMID 8922376. 
  14. ↑ "Regulation of vesicle trafficking in madin-darby canine kidney cells by Rab11a and Rab25". The Journal of Biological Chemistry 275 (37): 29138–46. Sep 2000. doi:10.1074/jbc.M004410200. PMID 10869360. 
  15. ↑ 15.0 15.1 "Rab11b is essential for recycling of transferrin to the plasma membrane". Experimental Cell Research 259 (1): 257–65. Aug 2000. doi:10.1006/excr.2000.4947. PMID 10942597. 
  16. ↑ "Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1". Proceedings of the National Academy of Sciences of the United States of America 103 (42): 15416–21. Oct 2006. doi:10.1073/pnas.0605357103. PMID 17030804. Bibcode: 2006PNAS..10315416S. 
  17. ↑ "The structural GDP/GTP cycle of Rab11 reveals a novel interface involved in the dynamics of recycling endosomes". The Journal of Biological Chemistry 279 (12): 11480–8. Mar 2004. doi:10.1074/jbc.M310558200. PMID 14699104. 
  18. ↑ "Estrogen lowers Alzheimer beta-amyloid generation by stimulating trans-Golgi network vesicle biogenesis". The Journal of Biological Chemistry 277 (14): 12128–36. Apr 2002. doi:10.1074/jbc.M110009200. PMID 11823458. 
  19. ↑ "Presenilins interact with Rab11, a small GTPase involved in the regulation of vesicular transport". Human Molecular Genetics 8 (7): 1263–9. Jul 1999. doi:10.1093/hmg/8.7.1263. PMID 10369872. 
  20. ↑ "Mutations in VIPAR cause an arthrogryposis, renal dysfunction and cholestasis syndrome phenotype with defects in epithelial polarization". Nature Genetics 42 (4): 303–12. Apr 2010. doi:10.1038/ng.538. PMID 20190753. 
  21. ↑ "Interconnections of CLN3, Hook1 and Rab proteins link Batten disease to defects in the endocytic pathway". Human Molecular Genetics 13 (23): 3017–27. Dec 2004. doi:10.1093/hmg/ddh321. PMID 15471887. 
  22. ↑ "SH3TC2, a protein mutant in Charcot-Marie-Tooth neuropathy, links peripheral nerve myelination to endosomal recycling". Brain 133 (Pt 8): 2462–74. Aug 2010. doi:10.1093/brain/awq168. PMID 20826437. 
  23. ↑ "Chlamydia pneumoniae inclusion membrane protein Cpn0585 interacts with multiple Rab GTPases". Infection and Immunity 75 (12): 5586–96. Dec 2007. doi:10.1128/IAI.01020-07. PMID 17908815. 
  24. ↑ "Rab6 and Rab11 regulate Chlamydia trachomatis development and golgin-84-dependent Golgi fragmentation". PLOS Pathogens 5 (10): e1000615. Oct 2009. doi:10.1371/journal.ppat.1000615. PMID 19816566. 
  25. ↑ "Rab GTPases are recruited to chlamydial inclusions in both a species-dependent and species-independent manner". Infection and Immunity 71 (10): 5855–70. Oct 2003. doi:10.1128/IAI.71.10.5855-5870.2003. PMID 14500507. 
  26. ↑ "A Rab11- and microtubule-dependent mechanism for cytoplasmic transport of influenza A virus viral RNA". Journal of Virology 85 (9): 4143–56. May 2011. doi:10.1128/JVI.02606-10. PMID 21307188. 
  27. ↑ "The Rab11 pathway is required for influenza A virus budding and filament formation". Journal of Virology 84 (12): 5848–59. Jun 2010. doi:10.1128/JVI.00307-10. PMID 20357086. 
  28. ↑ "Apical transport of influenza A virus ribonucleoprotein requires Rab11-positive recycling endosome". PLOS ONE 6 (6): e21123. 2011-06-22. doi:10.1371/journal.pone.0021123. PMID 21731653. Bibcode: 2011PLoSO...621123M. 
  29. ↑ Rowe, Regina K.; Jason W. Suszko; Andrew Pekosz (2008-12-20). "Roles for the recycling endosome, Rab8, and Rab11 in hantavirus release from epithelial cells". Virology 382 (2): 239–249. doi:10.1016/j.virol.2008.09.021. ISSN 0042-6822. PMID 18951604. 

Further reading



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