Biology:Ammoniphilus

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Ammoniphilus is a Gram-variable, strictly aerobic, rod-shaped, haloalkalitolerant spore-forming, obligately oxalotrophic and motile bacterial genus from the family of Paenibacillaceae with peritrichous flagella.[1][2][3][4][5] In the cell wall of Ammoniphilus is meso-diaminopimelic acid.[5]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[6]

16S rRNA based LTP_10_2024[7][8][9] 120 marker proteins based GTDB 09-RS220[10][11][12]
Ammoniphilus
 

A. resinae Lin et al. 2016

 
 
 

A. oxalaticus Zaitsev et al. 1998

 
 

A. oxalivorans Zaitsev et al. 1998

 
 
 
Ammoniphilus
 

A. resinae

 
 

A. oxalaticus

 
 

See also

References

  1. ↑ 1.0 1.1 J.P. Euzéby. "Ammoniphilus". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/ammoniphilus. 
  2. ↑ Zaitsev, G. M.; Tsitko, I. V.; Rainey, F. A.; Trotsenko, Y. A.; Uotila, J. S.; Stackebrandt, E.; Salkinoja-Salonen, M. S. (1 January 1998). "New aerobic ammonium-dependent obligately oxalotrophic bacteria: description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov.". International Journal of Systematic Bacteriology 48 (1): 151–163. doi:10.1099/00207713-48-1-151. PMID 9542085. 
  3. ↑ Paul, De Vos (2009). Bergey's manual of systematic bacteriology. (2nd ed.). Dordrecht: Springer. ISBN 978-0-387-68489-5. 
  4. ↑ Ammoniphilus. https://www.uniprot.org/taxonomy/66862. 
  5. ↑ 5.0 5.1 Rainey, Fred A. (1 January 2015). "Ammoniphilus" (in en). Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd. pp. 1–4. doi:10.1002/9781118960608.gbm00548. ISBN 978-1-118-96060-8. 
  6. ↑ Sayers. "Ammoniphilus". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=66862&lvl=3&keep=1&srchmode=1&unlock. 
  7. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  8. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  9. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  10. ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  11. ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  12. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

  • Young, Chiu-Chung; Lin, Shih-Yao; Liu, You-Cheng; Wu, Yun-Hsuan; Hameed, Asif (1 August 2016). "Ammoniphilus resinae sp. nov., an endospore-forming bacterium isolated from resin fragments". International Journal of Systematic and Evolutionary Microbiology 66 (8): 3010–3016. doi:10.1099/ijsem.0.001137. PMID 27151144. 
  • Zaitsev, G. M.; Tsitko, I. V.; Rainey, F. A.; Trotsenko, Y. A.; Uotila, J. S.; Stackebrandt, E.; Salkinoja-Salonen, M. S. (1 January 1998). "New aerobic ammonium-dependent obligately oxalotrophic bacteria: description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov.". International Journal of Systematic Bacteriology 48 (1): 151–163. doi:10.1099/00207713-48-1-151. PMID 9542085. 

Wikidata ☰ Q21217355 entry



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