Biology:Terrabacteria
| Terrabacteria | |
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| Scanning electron micrograph of Actinomyces israelii (Actinomycetota) | |
Scientific classification 
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| Domain: | Bacteria |
| Clade: | Terrabacteria Battistuzzi et al., 2004, Battistuzzi & Hedges, 2009 |
| Phyla | |
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| Synonyms | |
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Terrabacteria is a taxon containing approximately two-thirds of prokaryote species, including those in the gram positive phyla (Actinomycetota and Bacillota) as well as the phyla "Cyanobacteria", Chloroflexota, and Deinococcota.[1][2]
It derives its name (terra = "land") from the evolutionary pressures of life on land. Terrabacteria possess important adaptations such as resistance to environmental hazards (e.g., desiccation, ultraviolet radiation, and high salinity) and oxygenic photosynthesis. Also, the unique properties of the cell wall in gram-positive taxa, which likely evolved in response to terrestrial conditions, have contributed toward pathogenicity in many species.[2] These results now leave open the possibility that terrestrial adaptations may have played a larger role in prokaryote evolution than currently understood.[1][2]
Terrabacteria was proposed in 2004 for Actinomycetota, "Cyanobacteria", and Deinococcota[1] and was expanded later to include Bacillota and Chloroflexota.[2] Other phylogenetic analyses [3][4][5] have supported the close relationships of these phyla. Most species of prokaryotes not placed in Terrabacteria were assigned to the taxon Hydrobacteria,[2] in reference to the moist environment inferred for the common ancestor of those species. Some molecular phylogenetic analyses [6][7] have not supported this dichotomy of Terrabacteria and Hydrobacteria, but the most recent genomic analyses,[4][5] including those that have focused on rooting the tree,[4] have found these two groups to be monophyletic.[4]
Terrabacteria and Hydrobacteria were inferred to have diverged approximately 3 billion years ago, suggesting that land (continents) had been colonized by prokaryotes at that time.[2] Together, Terrabacteria and Hydrobacteria form a large group containing 97% of prokaryotes and 99% of all species of Bacteria known by 2009, and placed in the taxon Selabacteria, in allusion to their phototrophic abilities (selas = light).[8] Currently, the bacterial phyla that are outside of Terrabacteria + Hydrobacteria, and thus justifying the taxon Selabacteria, are debated and may or may not include Fusobacteria.[2][4]
The name “Glidobacteria” [9] included some members of Terrabacteria but excluded the large gram positive groups, Bacillota and Actinomycetota, and is not supported by molecular phylogenetic data.[1][2][3][6][7][4][5] Moreover, the article naming Glidobacteria [9] did not include a molecular phylogeny or statistical analyses and did not follow the widely used three-domain system. For example, it claimed that eukaryotes split from Archaea very recently (~900 Mya), which is contradicted by the fossil record,[10] and that lineage of eukaryotes + Archaea was nested within Bacteria as a close relative of Actinomycetota.
Phylogeny
The phylogenetic tree according to the phylogenetic analyses of Battistuzzi and Hedges (2009) is the following and with a molecular clock calibration.[1][2]
Recent molecular analyses have found roughly the following relationships including other phyla, whose relationships were uncertain.[11][12][13][14][15][16]
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On the other hand, Coleman et al.[4] named the clade composed of Thermotogota, Deinococcota, Synergistota and related as DST and furthermore the analysis suggests that ultra-small bacteria (CPR group) may belong to Terrabacteria being more closely related to Chloroflexota. According to this study the phylum Aquificota sometimes included belongs to Hydrobacteria and that the phylum Fusobacteriota can belong to both Terrabacteria and Hydrobacteria. The result was the following:[4]
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References
- ↑ 1.0 1.1 1.2 1.3 1.4 "A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land". BMC Evolutionary Biology 4: 44. November 2004. doi:10.1186/1471-2148-4-44. PMID 15535883.
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 "A major clade of prokaryotes with ancient adaptations to life on land". Molecular Biology and Evolution 26 (2): 335–343. February 2009. doi:10.1093/molbev/msn247. PMID 18988685.
- ↑ 3.0 3.1 "Automatic selection of representative proteins for bacterial phylogeny". BMC Evolutionary Biology 5 (1): 34. May 2005. doi:10.1186/1471-2148-5-34. PMID 15927057.
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 "A rooted phylogeny resolves early bacterial evolution". Science 372 (6542): eabe0511. May 2021. doi:10.1126/science.abe0511. PMID 33958449. https://research-information.bris.ac.uk/en/publications/51e9e402-36b7-47a6-91de-32b8cf7320d2.
- ↑ 5.0 5.1 5.2 "Was the Last Bacterial Common Ancestor a Monoderm after All?". Genes 13 (2): 376. February 2022. doi:10.3390/genes13020376. PMID 35205421.
- ↑ 6.0 6.1 "A new view of the tree of life". Nature Microbiology 1 (5): 16048. April 2016. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.
- ↑ 7.0 7.1 "Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea". Nature Communications 10 (1): 5477. December 2019. doi:10.1038/s41467-019-13443-4. PMID 31792218. Bibcode: 2019NatCo..10.5477Z.
- ↑ "Eubacteria". The Timetree of Life. New York: Oxford University Press. 2009. pp. 106–115. http://www.timetree.org/book.php.
- ↑ 9.0 9.1 "Rooting the tree of life by transition analyses". Biology Direct 1 (1): 19. July 2006. doi:10.1186/1745-6150-1-19. PMID 16834776.
- ↑ Life on a Young Planet : The First Three Billion Years of Evolution on Earth - Updated Edition. 2003. ISBN 0-691-00978-3. OCLC 1303471348.
- ↑ "Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system". Nature Communications 7: 13219. October 2016. doi:10.1038/ncomms13219. PMID 27774985. Bibcode: 2016NatCo...713219A.
- ↑ "Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria". Nature Communications 10 (1): 463. January 2019. doi:10.1038/s41467-018-08246-y. PMID 30692531. Bibcode: 2019NatCo..10..463M.
- ↑ "Atmospheric trace gases support primary production in Antarctic desert surface soil". Nature 552 (7685): 400–403. December 2017. doi:10.1038/nature25014. PMID 29211716. Bibcode: 2017Natur.552..400J.
- ↑ "Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples". Systematic and Applied Microbiology 41 (4): 279–290. July 2018. doi:10.1016/j.syapm.2018.01.009. PMID 29475572.
- ↑ "Insights into the phylogeny and coding potential of microbial dark matter". Nature 499 (7459): 431–437. July 2013. doi:10.1038/nature12352. PMID 23851394. Bibcode: 2013Natur.499..431R.
- ↑ "Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs". Nature Communications 7: 10476. January 2016. doi:10.1038/ncomms10476. PMID 26814032. Bibcode: 2016NatCo...710476E.
Wikidata ☰ Q873914 entry
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