Biology:Methylomirabilaceae

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Methylomirabilaceae is a family of bacteria,[1] represented by type genus Ca. Methylomirabilis. Represented most famously by the novel methane-oxidizing bacterium Ca. Methylomirabilis oxyfera,[2] which appears to split oxygen from nitrates, it contains several other genera not yet described.

SILVA 138.1[2][3] lists 6 uncultured genera currently within the family:

  • Candidatus Methylomirabilis
  • MIZ14
  • MIZ17
  • SH765B-TzT-35
  • wb1-A12
  • Z114MB74

These genera are consistently described in methane-rich environments,[4][5][6] but only species within Candidatus Methylomirabilis are confidently described as methane-oxidizers.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[7]

120 marker proteins based GTDB 10-RS226[8][9][10]
"Ca. Methylomirabilis"
 
 

"Ca. M. limnetica" Graf et al. 2018

 
 

"Ca. M. tolerans" Dalcin Martins et al. 2022

 
 
 
 

"Ca. M. lanthanidiphila" Versantvoort et al. 2018

 
 

"Ca. M. oxygeniifera" Ettwig et al. 2010 corrig. Oren 2017

 
 
 

Unassigned species of "Ca. Methylomirabilis":

  • "Ca. M. iodofontis" Zhu et al. 2022
  • "Ca. M. nitratireducens" Li et al. 2023
  • "Ca. M. sinica" He et al. 2016

See also

References

  1. ↑ 1.0 1.1 Template:Lpsn3
  2. ↑ 2.0 2.1 Ettwig, Katharina F.; Butler, Margaret K.; Le Paslier, Denis; Pelletier, Eric; Mangenot, Sophie; Kuypers, Marcel M. M.; Schreiber, Frank; Dutilh, Bas E. et al. (March 2010). "Nitrite-driven anaerobic methane oxidation by oxygenic bacteria" (in en). Nature 464 (7288): 543–548. doi:10.1038/nature08883. ISSN 0028-0836. PMID 20336137. Bibcode: 2010Natur.464..543E. https://hal-cea.archives-ouvertes.fr/cea-00907649/file/Ett.pdf. 
  3. ↑ "silva rRNA database Browser". https://www.arb-silva.de/browser/ssu-121/EU790991/. 
  4. ↑ Jiang, Lei; Chu, Yi-Xuan; Zhang, Xuan; Wang, Jing; He, Xiaosong; Liu, Chen-Yang; Chen, Ting; He, Ruo (November 2022). "Characterization of anaerobic oxidation of methane and microbial community in landfills with aeration" (in en). Environmental Research 214 (Pt 3). doi:10.1016/j.envres.2022.114102. ISSN 0013-9351. PMID 35973464. Bibcode: 2022ER....21414102J. 
  5. ↑ van Grinsven, Sigrid; Meier, Dimitri V.; Michel, Anja; Han, Xingguo; Schubert, Carsten J.; Lever, Mark A. (2022). "Redox Zone and Trophic State as Drivers of Methane-Oxidizing Bacterial Abundance and Community Structure in Lake Sediments". Frontiers in Environmental Science 10. doi:10.3389/fenvs.2022.857358. ISSN 2296-665X. Bibcode: 2022FrEnS..1057358V. 
  6. ↑ Yang, Sizhong; Anthony, Sara E.; Jenrich, Maren; in 't Zandt, Michiel H.; Strauss, Jens; Overduin, Pier Paul; Grosse, Guido; Angelopoulos, Michael et al. (2023-03-13). "Microbial methane cycling in sediments of Arctic thermokarst lagoons" (in en). Global Change Biology 29 (10): 2714–2731. doi:10.1111/gcb.16649. ISSN 1354-1013. PMID 36811358. Bibcode: 2023GCBio..29.2714Y. 
  7. ↑ Schoch CL. "Methylomirabilaceae". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=tree&id=3159504&lvl=3. Retrieved 2025-06-05. 
  8. ↑ "GTDB release 10-RS226". https://gtdb.ecogenomic.org/about#4%7C. 
  9. ↑ "bac120_r226.sp_label". https://data.gtdb.ecogenomic.org/releases/release226/226.0/auxillary_files/bac120_r226.sp_labels.tree. 
  10. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Wikidata ☰ Q124638163 entry




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