Biology:Adlercreutzia
| Adlercreutzia | |
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| Scientific classification | |
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| Class: | |
| Order: | Eggerthellales
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| Family: | |
| Genus: | Adlercreutzia |
| Type species | |
| Adlercreutzia equolifaciens Maruo et al. 2008
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| Species | |
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See text. | |
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Adlercreutzia is a genus in the phylum Actinomycetota (Bacteria).[1]
Etymology
The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health.[2]
Taxonomy
In 2018, Nouioui et al. proposed merging the genera Asaccharobacter, Enterorhabdus and Parvibacter within the genus Aldercreutzia based on observed clustering of these genera within phylogenetic trees.[3] However, subsequent phylogenetic analyses observed that Parvibacter caecicola exhibited much deeper branching compared to other Aldercreutzia species.[4] Additionally, five conserved signature indels (CSIs) present in the proteins excinuclease ABC subunit UvrA, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, phosphoribosylformylglycinamidine synthase, valine-tRNA ligase and cysteine–tRNA ligase were identified to be exclusively shared by all Aldercreutzia species with the exception of P. caecicola.[4] Thus, the emended description of the genus Aldercreutzia is the same as given before, with the exclusion of P. caecicola, which has been transferred back into the genus Parvibacter.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[5]
| 16S rRNA based LTP_08_2023[6][7][8] | 120 marker proteins based GTDB 08-RS214[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Species incertae sedis:[2]
- Adlercreutzia rubneri Stoll et al. 2021
See also
References
- ↑ 1.0 1.1 Maruo, T.; Sakamoto, M.; Ito, C.; Toda, T.; Benno, Y. (2008). "Adlercreutzia equolifaciens gen. Nov., sp. Nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella". International Journal of Systematic and Evolutionary Microbiology 58 (5): 1221–1227. doi:10.1099/ijs.0.65404-0. PMID 18450717. https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.65404-0.
- ↑ 2.0 2.1 2.2 2.3 "Adlercreutzia". https://lpsn.dsmz.de/genus/adlercreutzia.
- ↑ Nouioui, Imen; Carro, Lorena; García-López, Marina; Meier-Kolthoff, Jan P.; Woyke, Tanja; Kyrpides, Nikos C.; Pukall, Rüdiger; Klenk, Hans-Peter et al. (2018). "Genome-Based Taxonomic Classification of the Phylum Actinobacteria" (in English). Frontiers in Microbiology 9: 2007. doi:10.3389/fmicb.2018.02007. ISSN 1664-302X. PMID 30186281.
- ↑ 4.0 4.1 Gupta, Radhey S. (2021), Carro, Lorena, ed., "Eggerthellaceae" (in en), Bergey's Manual of Systematics of Archaea and Bacteria (American Cancer Society): pp. 1–11, doi:10.1002/9781118960608.fbm00384, ISBN 978-1-118-96060-8, https://onlinelibrary.wiley.com/doi/abs/10.1002/9781118960608.fbm00384, retrieved 2021-07-05
- ↑ Sayers. "Adlercreutzia". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=447020&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&keep=1&srchmode=1&unlock.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree.
- ↑ "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf.
- ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
Wikidata ☰ Q3883709 entry
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