Biology:Carboxylation
Carboxylation is a chemical reaction in which a carboxylic acid group is produced by treating a substrate with carbon dioxide.[1] The opposite reaction is decarboxylation. In chemistry, the term carbonation is sometimes used synonymously with carboxylation, especially when applied to the reaction of carbanionic reagents with CO2. More generally, carbonation usually describes the production of carbonates.[2]
Organic chemistry
Carboxylation is a standard conversion in organic chemistry.[3] Specifically carbonation (i.e. carboxylation) of Grignard reagents and organolithium compounds is a classic way to convert organic halides into carboxylic acids.[4]
Sodium salicylate, precursor to aspirin, is commercially prepared by treating sodium phenolate (the sodium salt of phenol) with carbon dioxide at high pressure (100 atm) and high temperature (390 K) – a method known as the Kolbe-Schmitt reaction. Acidification of the resulting salicylate salt gives salicylic acid.
Many detailed procedures are described in the journal Organic Syntheses.[5][6][7]
Carboxylation catalysts include N-Heterocyclic carbenes [8] and catalysts based on silver.[9]
Carboxylation in biochemistry
Carbon-based life originates from carboxylation that couples atmospheric carbon dioxide to a sugar. The process is usually catalysed by the enzyme RuBisCO. Ribulose-1,5-bisphosphate carboxylase/oxygenase, the enzyme that catalyzes this carboxylation, is possibly the single most abundant protein on Earth.[10][11][12]
Carboxylation in biochemistry includes a posttranslational modification of glutamate residues, to γ-carboxyglutamate, in proteins. It occurs primarily in proteins involved in the blood clotting cascade, specifically factors II, VII, IX, and X, protein C, and protein S, and also in some bone proteins. This modification is required for these proteins to function. Carboxylation occurs in the liver and is performed by γ-glutamyl carboxylase.[13]
The carboxylase requires vitamin K as a cofactor and performs the reaction in a processive manner.[14] γ-carboxyglutamate binds calcium, which is essential for its activity.[15] For example, in prothrombin, calcium binding allows the protein to associate with the plasma membrane in platelets, bringing it into close proximity with the proteins that cleave prothrombin to active thrombin after injury.[16]
See also
References
- ↑ "Carboxylation: The introduction of a carboxyl group into a molecule or compound to form a carboxylic acid or a carboxylate; an instance of this." Oxford English Dictionary. Oxford University Press. 2018. http://www.oed.com.
- ↑ "Carbonation: Impregnation or treatment with carbon dioxide; conversion into a carbonate." Oxford English Dictionary. Oxford University Press. 2018. http://www.oed.com.
- ↑ Braunstein, Pierre; Matt, Dominique; Nobel, Dominique (August 1988). "Reactions of Carbon Dioxide with Carbon-Carbon Bond Formation Catalyzed by Transition-Metal Complexes". Chemical Reviews 88 (5): 747–764. doi:10.1021/cr00087a003.
- ↑ A. M. Appel (2013). "Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO2 Fixation". Chem. Rev. 113 (8): 6621–6658. doi:10.1021/cr300463y. PMID 23767781.
- ↑ Akira Yanagisawa; Katsutaka Yasue; Hisashi Yamamoto (1997). "Regio- and Stereoselective Carboxylation of Allylic Barium Reagents: (E)-4,8-Dimethyl-3,7-Nonadienoic Acid". Organic Syntheses 74: 178. doi:10.15227/orgsyn.074.0178.
- ↑ H. Koch; W. Haaf (1964). "1-Adamantanecarboxylic Acid". Organic Syntheses 44: 1. doi:10.15227/orgsyn.044.0001.
- ↑ W. Haaf (1966). "1-Methylcyclohexanecarboxylic Acid". Organic Syntheses 46: 72. doi:10.15227/orgsyn.046.0072.
- ↑ Zhang Liang (2013). "N-Heterocyclic carbene (NHC)–copper-catalysed transformations of carbon dioxide". Chemical Science 4: 3395. doi:10.1039/C3SC51070K.
- ↑ K. Sekine; T. Yamada (2016). "Silver-catalyzed carboxylation". Chem. Soc. Rev. 45 (16): 4524–4532. doi:10.1039/C5CS00895F.
- ↑ "Enhanced translation of a chloroplast-expressed RbcS gene restores small subunit levels and photosynthesis in nuclear RbcS antisense plants". Proc. Natl. Acad. Sci. U.S.A. 101 (16): 6315–20. April 2004. doi:10.1073/pnas.0400981101. PMID 15067115. Bibcode: 2004PNAS..101.6315D. "(Rubisco) is the most prevalent enzyme on this planet, accounting for 30–50% of total soluble protein in the chloroplast;".
- ↑ "Rubiscolytics: fate of Rubisco after its enzymatic function in a cell is terminated". J. Exp. Bot. 59 (7): 1615–24. 2008. doi:10.1093/jxb/erm242. PMID 17975207. https://boris.unibe.ch/30426/1/2008_JExpBot_59_1615.pdf.
- ↑ Raven, John A. (April 2013). "Rubisco: still the most abundant protein of Earth?". New Phytologist 198 (1): 1–3. doi:10.1111/nph.12197. https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.12197.
- ↑ OMIM - gamma-glutamyl carboxylase, contributed by McKusick VA, last updated October 2004 [1]
- ↑ "Processive post-translational modification. Vitamin K-dependent carboxylation of a peptide substrate". J. Biol. Chem. 270 (51): 30491–8. 1995. doi:10.1074/jbc.270.51.30491. PMID 8530480.
- ↑ "Direct identification of the calcium-binding amino acid, gamma-carboxyglutamate, in mineralized tissue". Proc. Natl. Acad. Sci. U.S.A. 72 (10): 3925–9. 1975. doi:10.1073/pnas.72.10.3925. PMID 1060074. Bibcode: 1975PNAS...72.3925H.
- ↑ Berg JM, Tymoczko JL, Stryer L. Biochemistry, 5th ed. New York: W. H. Freeman and Company, 2002.
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