Biology:Desulfovibrio
| Desulfovibrio | |
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| Scientific classification | |
| Domain: | |
| Phylum: | |
| Class: | Desulfovibrionia
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| Order: | |
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| Genus: | Desulfovibrio Kluyver & van Niel 1936
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| Type species | |
| Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver & van Niel 1936
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| Species | |
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See text | |
| Synonyms | |
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Desulfovibrio is a genus of Gram-negative sulfate-reducing bacteria. Desulfovibrio species are commonly found in aquatic environments with high levels of organic material, as well as in water-logged soils, and form major community members of extreme oligotrophic habitats such as deep granitic fractured rock aquifers.
High amounts of Desulfovibrio bacteria have been associated with inflammatory bowel disease, bacteremia infections and Parkinson's disease.[1][2]
Some Desulfovibrio species have in recent years been shown to have bioremediation potential for toxic radionuclides such as uranium by a reductive bioaccumulation process, such as converting highly water-soluble U(VI) to relatively insoluble U(IV) precipitate, thus removing the toxic uranium from contaminated water.[3]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI)[5]
| 16S rRNA based LTP_08_2023[6][7][8] | 120 marker proteins based GTDB 08-RS214[9][10][11] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Unassigned species:
- "D. caledoniensis" Tardy-Jacquenod et al. 1996
- "D. cavernae" Sass & Cypionka 2004
- "D. diazotrophica" Sayavedra et al. 2021
- "D. halohydrocarbonoclasticus" Zobell 1947
- "D. hontreensis" Tarasov et al. 2015
- "D. mangrovi" Zhou, Zhang & Li 2023
- "D. multispirans" Czechowski et al. 1984
- "D. oliviopondense" Qatabi Sr. 2007
- "D. oryzae" Ouattara et al. 2000b
- "D. rubentschikii" (Baars 1930) ZoBell 1948
- "D. singaporenus" Sheng et al. 2007
See also
References
- ↑ Hong-Xia Fan, Shuo Sheng, Feng Zhang (2022). "New hope for Parkinson's disease treatment: Targeting gut microbiota". CNS Neuroscience & Therapeutics 28 (11): 1675–1688. doi:10.1111/cns.13916. PMID 35822696.
- ↑ Li, Zhe; Liang, Hongfeng; Hu, Yingyu (2023). "Gut bacterial profiles in Parkinson's disease: A systematic review". CNS Neuroscience & Therapeutics 29 (1): 140–157. doi:10.1111/cns.13990. PMID 36284437.
- ↑ Lovley, Derek R.; Phillips, Elizabeth J. P. (November 1992). "Bioremediation of uranium contamination with enzymatic uranium reduction" (in en). Environmental Science & Technology 26 (11): 2228–2234. doi:10.1021/es00035a023. ISSN 0013-936X. Bibcode: 1992EnST...26.2228L. https://pubs.acs.org/doi/abs/10.1021/es00035a023.
- ↑ J.P. Euzéby. "Desulfovibrio". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/Desulfovibrio.
- ↑ Sayers. "Desulfovibrio". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=872&lvl=3&keep=1&srchmode=1&unlock.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree.
- ↑ "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf.
- ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
- Brock Biology of Microorganisms (11th ed.). Prentice Hall. 2005. ISBN 0-13-144329-1.
External links
- Amrani, Amira; Bergon, Aurelie; Holota, Helene; Tamburini, Christian; Garel, Marc; Ollivier, Bernard; Imbert, Jean; Dolla, Alain (12 September 2014). "Transcriptomics Reveal Several Gene Expression Patterns in the Piezophile Desulfovibrio hydrothermalis in Response to Hydrostatic Pressure". PLOS ONE 9 (9): e106831. doi:10.1371/journal.pone.0106831. PMID 25215865. Bibcode: 2014PLoSO...9j6831A.
- Czechowski, Melvin; Rossmore, H.W. (1981). Developments in Industrial Microbiology. http://www.biosan.com/pubs/EffectSelected.pdf. Retrieved 2010-10-20.
Wikidata ☰ Q15846377 entry
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