Biology:Geomicrobium

From HandWiki

Geomicrobium is a moderately halophilic and alkaliphilic genus of bacteria from the family of Bacillaceae with one known species (Geomicrobium halophilum).[1][2][3] Geomicrobium halophilum has been isolated from garden soil in Japan.[3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[4]

16S rRNA based LTP_10_2024[5][6][7] 120 marker proteins based GTDB 09-RS220[8][9][10]
 
 

Geomicrobium sediminis Xiong et al. 2014

 
 
 

Geomicrobium halophilum Echigo et al. 2010

 
 

other

 
 
 
 
 

Geomicrobium sediminis

 
 
 

Geomicrobium halophilum

 
 

other

 
 
 

See also

References

  1. ↑ 1.0 1.1 A.C. Parte. "Geomicrobium". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/geomicrobium. 
  2. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named UniProt
  3. ↑ 3.0 3.1 Echigo, Akinobu; Minegishi, Hiroaki; Mizuki, Toru; Kamekura, Masahiro; Usami, Ron (1 April 2010). "Geomicrobium halophilum gen. nov., sp. nov., a moderately halophilic and alkaliphilic bacterium isolated from soil". International Journal of Systematic and Evolutionary Microbiology 60 (4): 990–995. doi:10.1099/ijs.0.013268-0. PMID 19666816. 
  4. ↑ C.L. Schoch. "Geomicrobium". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=767528&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  5. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  6. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  7. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  8. ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  9. ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  10. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Wikidata ☰ Q26211780 entry