Biology:Geomicrobium

From HandWiki

Geomicrobium is a moderately halophilic and alkaliphilic genus of bacteria from the family of Bacillaceae with one known species (Geomicrobium halophilum).[1][2][3] Geomicrobium halophilum has been isolated from garden soil in Japan.[3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[4]

16S rRNA based LTP_10_2024[5][6][7] 120 marker proteins based GTDB 09-RS220[8][9][10]

Geomicrobium sediminis Xiong et al. 2014

Geomicrobium halophilum Echigo et al. 2010

other

Geomicrobium sediminis

Geomicrobium halophilum

other

See also

References

  1. 1.0 1.1 A.C. Parte. "Geomicrobium". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/geomicrobium. 
  2. Cite error: Invalid <ref> tag; no text was provided for refs named UniProt
  3. 3.0 3.1 Echigo, Akinobu; Minegishi, Hiroaki; Mizuki, Toru; Kamekura, Masahiro; Usami, Ron (1 April 2010). "Geomicrobium halophilum gen. nov., sp. nov., a moderately halophilic and alkaliphilic bacterium isolated from soil". International Journal of Systematic and Evolutionary Microbiology 60 (4): 990–995. doi:10.1099/ijs.0.013268-0. PMID 19666816. 
  4. C.L. Schoch. "Geomicrobium". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=767528&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  5. "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  6. "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  7. "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  8. "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  9. "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  10. "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Wikidata ☰ Q26211780 entry